Experiment Information (Status: Released)

RBP	FUBP3
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	56

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
FUBP3-1300	RBNS	20-20	1300	FUBP3_1300.fastq.gz
FUBP3-20	RBNS	20-20	20	FUBP3_20.fastq.gz
FUBP3-320	RBNS	20-20	320	FUBP3_320.fastq.gz
FUBP3-5	RBNS	20-20	5	FUBP3_5.fastq.gz
FUBP3-80	RBNS	20-20	80	FUBP3_80.fastq.gz
FUBP3-input	CN	20-20	0	FUBP3_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:FUBP3	ENCSR697VZN	experiment	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-12	ENCODE3			8014
chris-burge:FUBP3-input-cntl	ENCSR490BSK	experiment	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-12	ENCODE3			8015
chris-burge:lib-FUBP3-1	ENCLB536OGN	library	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-12	ENCODE3			8222
chris-burge:lib-FUBP3-2	ENCLB586RRZ	library	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-12	ENCODE3			8223
chris-burge:lib-FUBP3-3	ENCLB449LJI	library	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-12	ENCODE3			8224
chris-burge:lib-FUBP3-4	ENCLB724FSQ	library	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-12	ENCODE3			8225
chris-burge:lib-FUBP3-5	ENCLB247MPT	library	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-12	ENCODE3			8226
chris-burge:lib-FUBP3-input-cntl	ENCLB309LVG	library	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-12	ENCODE3			8227
chris-burge:FUBP3_1300.fastq.gz	ENCFF626IFM	file_fastq	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			8689
chris-burge:FUBP3_20.fastq.gz	ENCFF012DBP	file_fastq	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			8690
chris-burge:FUBP3_320.fastq.gz	ENCFF071WGX	file_fastq	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			8691
chris-burge:FUBP3_5.fastq.gz	ENCFF130HUZ	file_fastq	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			8692
chris-burge:FUBP3_80.fastq.gz	ENCFF146YJF	file_fastq	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			8693
chris-burge:FUBP3_input.fastq.gz	ENCFF668WQD	file_fastq	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			8694
chris-burge:FUBP3_enrichment_R.4mers.txt	ENCFF415RLT	file_enrichment	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			9102
chris-burge:FUBP3_enrichment_R.5mers.txt	ENCFF826BAQ	file_enrichment	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			9103
chris-burge:FUBP3_enrichment_R.6mers.txt	ENCFF891TDY	file_enrichment	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			9104
chris-burge:FUBP3_enrichment_R.7mers.txt	ENCFF610YNE	file_enrichment	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			9105
chris-burge:FUBP3_est_binding_frac.4mers.txt	ENCFF771NBD	file_library-fraction	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			9106
chris-burge:FUBP3_est_binding_frac.5mers.txt	ENCFF229MQG	file_library-fraction	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			9107
chris-burge:FUBP3_est_binding_frac.6mers.txt	ENCFF340APJ	file_library-fraction	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			9108
chris-burge:FUBP3_est_binding_frac.7mers.txt	ENCFF901VSN	file_library-fraction	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			9109
chris-burge:HepG2.with_motif.FUBP3.bed.gz	ENCFF325TXM	file_bed	RNA Bind-n-Seq	FUBP3		Yes	Released	2022-07-14	ENCODE3			9717

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
FUBP3.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
FUBP3_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP3_input.fastq.gz	ENCODE3
FUBP3_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP3_input.fastq.gz	ENCODE3
FUBP3_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP3_input.fastq.gz	ENCODE3
FUBP3_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP3_input.fastq.gz	ENCODE3
FUBP3_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP3_input.fastq.gz	ENCODE3
FUBP3_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
FUBP3_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP3_1300.fastq.gz,FUBP3_20.fastq.gz,FUBP3_320.fastq.gz,FUBP3_5.fastq.gz,FUBP3_80.fastq.gz,FUBP3_input.fastq.gz		ENCODE3
FUBP3_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP3_1300.fastq.gz,FUBP3_20.fastq.gz,FUBP3_320.fastq.gz,FUBP3_5.fastq.gz,FUBP3_80.fastq.gz,FUBP3_input.fastq.gz		ENCODE3
FUBP3_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP3_1300.fastq.gz,FUBP3_20.fastq.gz,FUBP3_320.fastq.gz,FUBP3_5.fastq.gz,FUBP3_80.fastq.gz,FUBP3_input.fastq.gz		ENCODE3
FUBP3_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP3_1300.fastq.gz,FUBP3_20.fastq.gz,FUBP3_320.fastq.gz,FUBP3_5.fastq.gz,FUBP3_80.fastq.gz,FUBP3_input.fastq.gz		ENCODE3
FUBP3_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP3_1300.fastq.gz,FUBP3_20.fastq.gz,FUBP3_320.fastq.gz,FUBP3_5.fastq.gz,FUBP3_80.fastq.gz,FUBP3_input.fastq.gz		ENCODE3
FUBP3_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP3_1300.fastq.gz,FUBP3_20.fastq.gz,FUBP3_320.fastq.gz,FUBP3_5.fastq.gz,FUBP3_80.fastq.gz,FUBP3_input.fastq.gz		ENCODE3
FUBP3_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP3_1300.fastq.gz,FUBP3_20.fastq.gz,FUBP3_320.fastq.gz,FUBP3_5.fastq.gz,FUBP3_80.fastq.gz,FUBP3_input.fastq.gz		ENCODE3
FUBP3_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP3_1300.fastq.gz,FUBP3_20.fastq.gz,FUBP3_320.fastq.gz,FUBP3_5.fastq.gz,FUBP3_80.fastq.gz,FUBP3_input.fastq.gz		ENCODE3
HepG2.with_motif.FUBP3.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	FUBP3_enrichment_R.5mers.txt,571.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3