CHERP

General Information

Gene Name       : CHERP
Gene ID             : ENSG00000085872.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CHERP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHERPENSG00000085872.142.2211.967.09ENCSR000AEF
HepG2CHERPENSG00000085872.1432.1111.6021.86ENCSR985KAT
K562CHERPENSG00000085872.1430.1917.6923.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHERP is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHERP RNA is bound by 28 proteins.  







eCLIP assay for CHERP is not avaliable on ENCORE database.





28 proteins are bound to CHERP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191662922516629266-3'-UTR,intron-Distal3.505576.66613K562PUM2
chr191662876916628837-3'-UTR,intron-Distal3.855124.03249HepG2FUBP3
chr191662875616628817-3'-UTR,intron-Distal3.458464.54145K562DDX6
chr191662921416629259-3'-UTR,intron-Distal3.321364.50192K562FAM120A
chr191662993516629984-3'-UTR,CDS,intron-Distal,intron-Proximal4.328034.49605HepG2UPF1
chr191662908216629142-3'-UTR,intron-Distal4.145345.97891K562FAM120A
chr191662939216629410-3'-UTR,intron-Distal3.724434.24288K562UPF1
chr191662919816629258-3'-UTR,intron-Distal3.234174.00685K562TIA1
chr191662935816629412-3'-UTR,intron-Distal3.557884.22460K562RBM15
chr191662899516629046-3'-UTR,intron-Distal3.706106.80293K562YBX3
chr191662992016630010-3'-UTR,CDS,intron-Distal,intron-Proximal3.011145.22575K562UCHL5
chr191662935416629397-3'-UTR,intron-Distal3.047453.13705K562BUD13
chr191662948916629651-3'-UTR,intron-Distal,intron-Proximal4.3989013.41308HepG2UPF1
chr191662916116629226-3'-UTR,intron-Distal3.529315.09017HepG2UPF1
chr191662978516629869-3'-UTR,intron-Distal3.595204.54434HepG2UPF1
chr191662907316629141-3'-UTR,intron-Distal4.1004610.04737K562UPF1
chr191662993816629986-3'-UTR,CDS,intron-Distal,intron-Proximal4.234403.11282HepG2G3BP1
chr191662979916629896-3'-UTR,intron-Distal,intron-Proximal3.477124.59151HepG2G3BP1
chr191662892816628991-3'-UTR,intron-Distal3.462826.98582K562UPF1
chr191662914116629208-3'-UTR,intron-Distal3.091323.20150HepG2AKAP1
chr191662921616629264-3'-UTR,intron-Distal3.281343.18141HepG2FUBP3
chr191662914616629272-3'-UTR,intron-Distal3.2287118.36784K562UPF1
chr191662889716628959-3'-UTR,intron-Distal4.324927.45604K562PUM2
chr191665316416653235-5'-UTR,CDS,intron-Distal,intron-Proximal3.360966.19730K562ZNF622
chr191665316216653233-5'-UTR,CDS,intron-Distal,intron-Proximal5.441486.02643HepG2DDX3X
chr191665316216653239-5'-UTR,CDS,intron-Distal,intron-Proximal3.309924.39112K562DDX3X
chr191664340816643540-CDS,intron-Distal,intron-Proximal4.327626.78826K562FXR2
chr191663887416639068-CDS,intron-Distal,intron-Proximal3.595707.17964K562ZNF800
chr191663013316630210-3'-UTR,CDS,intron-Distal,intron-Proximal4.9035116.10260HepG2SF3B4
chr191663598816636062-CDS,intron-Distal,intron-Proximal3.010924.36251K562PRPF8
chr191664056116640631-CDS,intron-Distal3.527138.32162K562ZNF622
chr191663604716636180-CDS,intron-Distal,intron-Proximal4.856154.17937HepG2PCBP2
chr191663244816632543-CDS,intron-Distal,intron-Proximal4.124753.59236HepG2AQR
chr191664346916643518-CDS,intron-Distal3.258787.43930K562YBX3
chr191663011916630228-3'-UTR,CDS,intron-Distal,intron-Proximal4.870326.90190HepG2AQR
chr191663601016636081-CDS,intron-Distal,intron-Proximal3.056307.15382HepG2PRPF8
chr191663409816634178-CDS,intron-Distal,intron-Proximal3.703814.52919HepG2SF3B4
chr191663008816630161-3'-UTR,CDS,intron-Distal3.170633.50786HepG2G3BP1
chr191664640616646447-CDS,intron-Distal3.264313.43213K562UCHL5
chr191663616716636231-CDS,intron-Distal4.179296.50713K562IGF2BP2
chr191663381516633897-CDS,intron-Distal,intron-Proximal3.481518.45537HepG2PRPF8
chr191664339716643449-CDS,intron-Distal,intron-Proximal5.782988.32974K562DDX24
chr191663888916638952-CDS,intron-Distal,intron-Proximal3.365923.77614HepG2G3BP1
chr191664387316643957-CDS,intron-Distal4.647444.08604HepG2PPIG
chr191663645716636544-CDS,intron-Distal,intron-Proximal3.645205.47851K562SF3B4
chr191664150716641590-CDS,intron-Distal,intron-Proximal4.284525.93840HepG2PRPF8
chr191663393616634047-CDS,intron-Distal3.217426.34759K562IGF2BP2
chr191665280016652855-CDS,intron-Distal,intron-Proximal3.716299.42776K562ZNF622
chr191664340616643446-CDS,intron-Distal,intron-Proximal3.783793.14999HepG2GRWD1
chr191664390916643963-CDS,intron-Distal,intron-Proximal4.088683.96990K562BUD13
chr191665267516652753-CDS,intron-Distal,intron-Proximal5.3815510.28526K562UCHL5
chr191665267816652722-CDS,intron-Distal,intron-Proximal3.559254.19763K562DDX24
chr191664139916641445-CDS,intron-Distal4.939934.67689HepG2PPIG
chr191664351816643548-CDS,intron-Distal3.945378.14591K562YBX3
chr191665282816652924-CDS,intron-Distal,intron-Proximal3.224557.99874HepG2BUD13
chr191663225316632335-CDS,intron-Distal,intron-Proximal4.395795.97994K562AQR
chr191663163616631719-CDS,intron-Distal,intron-Proximal4.090124.13746HepG2PPIG
chr191665263316652701-CDS,intron-Distal,intron-Proximal4.348786.23016HepG2PRPF8
chr191664335316643420-CDS,intron-Distal,intron-Proximal4.291216.81564HepG2PRPF8
chr191663091516630970-CDS,intron-Distal,intron-Proximal3.268674.22621HepG2PRPF8
chr191664164516641694-CDS,intron-Distal,intron-Proximal3.869844.68902HepG2PPIG
chr191663896016639067-CDS,intron-Distal,intron-Proximal3.476063.69481K562UCHL5
chr191664157816641628-CDS,intron-Distal,intron-Proximal4.350444.67299K562DDX24
chr191663165116631680-CDS,intron-Distal3.324664.74755K562ZNF622
chr191663644416636490-CDS,intron-Distal,intron-Proximal3.223223.24162HepG2G3BP1
chr191663012216630207-3'-UTR,CDS,intron-Distal,intron-Proximal4.7007111.17285K562SF3B4
chr191663172116631775-CDS,intron-Distal,intron-Proximal5.069205.40008K562SF3B4
chr191663013616630178-3'-UTR,CDS,intron-Distal,intron-Proximal4.411015.17013K562RBM15
chr191665264416652728-CDS,intron-Distal,intron-Proximal4.456244.62947HepG2AQR
chr191663604216636054-CDS,intron-Distal,intron-Proximal4.284594.98250K562AQR
chr191664063116640712-CDS,intron-Distal,intron-Proximal3.063899.17031K562ZNF622
chr191663037516630434-CDS,intron-Distal,intron-Proximal4.786016.59451HepG2PRPF8
chr191663875516638832-intron-Distal,intron-Proximal3.005944.14020K562BUD13
chr191664045016640458-intron-Distal,intron-Proximal3.700765.00154HepG2AQR
chr191663173616631787-intron-Distal,intron-Proximal4.390013.93614HepG2AQR
chr191664041816640450-intron-Distal,intron-Proximal4.963797.23427HepG2AQR
chr191663071416630766-intron-Distal,intron-Proximal3.673645.29272K562BUD13
chr191663153416631602-intron-Distal,intron-Proximal3.891225.05356HepG2PRPF8
chr191663083216630898-intron-Distal,intron-Proximal3.214575.33133K562BUD13
chr191663601016636042-intron-Distal,intron-Proximal4.342335.47926K562AQR
chr191664134216641376-intron-Distal,intron-Proximal4.049855.47926K562AQR
chr191663025316630350-intron-Distal,intron-Proximal3.788084.51074HepG2RBFOX2
chr191663172816631775-intron-Distal,intron-Proximal4.226464.57682HepG2SF3B4
chr191664287316642963-intron-Distal3.704833.06084HepG2HNRNPK
chr191664321916643277-intron-Distal4.384434.53454K562PRPF8
chr191663082516630886-intron-Distal,intron-Proximal3.683585.30520K562UCHL5
chr191664794316648089-intron-Distal4.025443.63122HepG2PRPF4
chr191664645816646547-intron-Distal,intron-Proximal4.182493.93614HepG2AQR
chr191663054916630629-intron-Distal,intron-Proximal3.065883.51696K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHERP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHERP is not available on ENCORE database.

  • 108 RBPs can affect the levels of CHERP.  








The Knockdown/knockout RNA-Seq assay for CHERP is not available on ENCORE database.





108 RBPs can affect the gene expression of CHERP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHERPENSG00000085872.102551.891101790.103300.511404.566103.37900HepG2ABCF1
CHERPENSG00000085872.101094.256401502.47820-0.457407.359506.32780HepG2AUH
CHERPENSG00000085872.10591.76990929.52240-0.651505.117104.10770HepG2CALR
CHERPENSG00000085872.101569.077801280.040600.293604.121303.34060HepG2CKAP4
CHERPENSG00000085872.10604.33460429.993500.490904.436503.14820HepG2YBX3
CHERPENSG00000085872.10606.64140422.189000.522904.219103.36580HepG2DNAJC21
CHERPENSG00000085872.10863.54500418.508001.0449025.6881023.89600HepG2DNAJC2
CHERPENSG00000085872.101626.183401042.372500.641502.603501.98230HepG2EIF4A3
CHERPENSG00000085872.10700.899901473.45530-1.071909.475508.33880HepG2GPKOW
CHERPENSG00000085872.10705.07390453.348700.637102.697401.34910HepG2HNRNPA0
CHERPENSG00000085872.10681.87930426.234200.677802.593301.96560HepG2HNRNPA1
CHERPENSG00000085872.10543.54260746.80110-0.458304.560003.40910HepG2HNRNPA2B1
CHERPENSG00000085872.101506.03560970.218500.6343012.3971011.02480HepG2HNRNPF
CHERPENSG00000085872.101011.46980740.164600.450406.754705.74700HepG2HNRNPL
CHERPENSG00000085872.10806.65470470.986600.776205.895105.03820HepG2HNRNPU
CHERPENSG00000085872.101457.78930955.383100.609508.619707.41120HepG2IGF2BP1
CHERPENSG00000085872.10664.98260481.094500.466905.534404.52830HepG2ILF2
CHERPENSG00000085872.101529.418501053.072100.538301.947501.39240HepG2MAGOH
CHERPENSG00000085872.101174.904201462.24900-0.315602.460601.69630HepG2MSI2
CHERPENSG00000085872.101123.55650805.740800.479605.831304.72860HepG2NOL12
CHERPENSG00000085872.101590.11380674.262701.237609.910107.21050HepG2NOLC1
CHERPENSG00000085872.10829.68360489.530400.761104.252803.13710HepG2PABPC1
CHERPENSG00000085872.10959.75360420.079701.191908.285707.05820HepG2PPIL4
CHERPENSG00000085872.101281.75880769.167900.7367010.215409.16790HepG2PUF60
CHERPENSG00000085872.101531.49840816.526500.9073030.7241029.17710HepG2PUM1
CHERPENSG00000085872.101219.55960815.917100.579803.755602.97980HepG2PUM2
CHERPENSG00000085872.10987.96470650.215900.603403.961602.76040HepG2RBM27
CHERPENSG00000085872.101019.90050528.007500.949709.915507.94370HepG2RCC2
CHERPENSG00000085872.101026.56940706.736600.538502.161701.61170HepG2RPS19
CHERPENSG00000085872.10848.31330599.607900.500502.793201.98930HepG2RPS2
CHERPENSG00000085872.10866.46390538.209900.686903.831902.88930HepG2RPS3A
CHERPENSG00000085872.10866.93210612.137900.502002.602401.56240HepG2RPS5
CHERPENSG00000085872.10974.87240419.425201.2167033.4293031.54730HepG2SAFB2
CHERPENSG00000085872.10875.14900506.801300.788004.184402.58640HepG2SART3
CHERPENSG00000085872.101213.98730625.928500.955602.897201.50400HepG2SF1
CHERPENSG00000085872.103427.164602129.185900.686605.688804.70200HepG2SF3A3
CHERPENSG00000085872.101469.323201092.586200.427306.465505.62370HepG2SF3B4
CHERPENSG00000085872.101385.71520737.554900.9097024.0765022.41080HepG2SLBP
CHERPENSG00000085872.10773.75770489.105100.6616010.538109.41450HepG2SMN1
CHERPENSG00000085872.101115.78090559.506400.995703.320801.85300HepG2SNRNP200
CHERPENSG00000085872.101118.112501548.57640-0.469902.597601.84070HepG2SNRNP70
CHERPENSG00000085872.10818.472201140.48550-0.478604.687804.11330HepG2SRSF1
CHERPENSG00000085872.101186.91500759.466200.644107.318606.36760HepG2SRSF5
CHERPENSG00000085872.101286.28790953.225300.432205.928704.97220HepG2SRSF7
CHERPENSG00000085872.10586.01650927.89910-0.663007.535906.70620HepG2SRSF9
CHERPENSG00000085872.10859.58220468.394400.875806.758904.97530HepG2STIP1
CHERPENSG00000085872.101472.17170863.701000.7692020.5501019.10510HepG2SUCLG1
CHERPENSG00000085872.10398.94380674.47220-0.757602.468801.82560HepG2SUPV3L1
CHERPENSG00000085872.10405.725201025.28480-1.3374019.5724018.27450HepG2TAF15
CHERPENSG00000085872.10701.53940941.91460-0.425102.062101.33770HepG2TIA1
CHERPENSG00000085872.10810.37810457.592800.824405.266104.62170HepG2TIAL1
CHERPENSG00000085872.10917.57640461.746300.9906021.6793020.28810HepG2TRIM56
CHERPENSG00000085872.101174.89000751.478500.644603.390502.41320HepG2TUFM
CHERPENSG00000085872.102104.153801545.821500.444803.133202.46710HepG2U2AF1
CHERPENSG00000085872.101426.48980650.687801.132303.906602.72220HepG2U2AF2
CHERPENSG00000085872.101467.403501888.26110-0.363805.898304.94010HepG2UPF1
CHERPENSG00000085872.10774.58060482.110200.684003.257002.05620HepG2XPO5
CHERPENSG00000085872.10988.54640663.948000.574101.936901.32250HepG2XRN2
CHERPENSG00000085872.10985.755201195.34500-0.278103.091402.38870HepG2ZC3H8
CHERPENSG00000085872.101676.572602076.72750-0.308805.505004.80110HepG2ZNF622
CHERPENSG00000085872.103141.107501856.295700.7587015.1466013.92810K562AGGF1
CHERPENSG00000085872.103294.354001931.597700.770108.937707.69010K562AKAP8L
CHERPENSG00000085872.102444.007103020.56460-0.305602.831701.57680K562APOBEC3C
CHERPENSG00000085872.103785.131802407.144100.6529010.446209.41600K562AQR
CHERPENSG00000085872.102685.651502026.782400.406005.899104.50230K562ATP5C1
CHERPENSG00000085872.101597.637901206.116900.405505.166103.26650K562BCCIP
CHERPENSG00000085872.101524.581001165.604600.387205.283303.93930K562BCLAF1
CHERPENSG00000085872.101188.994801498.66280-0.333902.373501.57130K562BOP1
CHERPENSG00000085872.103688.290403002.273100.296802.307101.30650K562CPEB4
CHERPENSG00000085872.103368.710804209.22260-0.321404.255203.03630K562CELF1
CHERPENSG00000085872.103092.732402465.474100.326905.224903.52130K562DDX21
CHERPENSG00000085872.103618.592303106.582300.220002.807902.15090K562DDX47
CHERPENSG00000085872.102595.801802078.300200.320702.842701.95540K562DKC1
CHERPENSG00000085872.101963.44470994.466000.9813012.3183010.22920K562EFTUD2
CHERPENSG00000085872.10880.50260501.754700.8112012.3510010.64210K562EIF3G
CHERPENSG00000085872.102041.043001421.796100.521502.053301.34280K562EIF4A3
CHERPENSG00000085872.101545.430001280.442000.271302.661001.53750K562EIF4B
CHERPENSG00000085872.101115.893101621.43740-0.539105.775904.53040K562FMR1
CHERPENSG00000085872.102307.360001478.614800.6419014.7659013.48060K562FXR1
CHERPENSG00000085872.10151.97710411.43120-1.4368012.3248010.60950K562G3BP2
CHERPENSG00000085872.10957.757901521.25530-0.667508.899207.46610K562GPKOW
CHERPENSG00000085872.102404.008501437.402100.741903.592402.14020K562HNRNPA2B1
CHERPENSG00000085872.101849.943101345.042000.459705.054003.44910K562HNRNPF
CHERPENSG00000085872.101584.097502660.65410-0.7481011.7402010.12900K562HSPD1
CHERPENSG00000085872.101329.36280697.258500.930902.730101.71190K562IGF2BP2
CHERPENSG00000085872.102555.254502049.775300.317903.248602.34800K562KIF1C
CHERPENSG00000085872.10906.691801299.14540-0.518903.554902.48200K562KRR1
CHERPENSG00000085872.101773.351501343.586600.400304.003402.07740K562LSM11
CHERPENSG00000085872.101666.22260732.071801.1864023.5554020.89630K562MAGOH
CHERPENSG00000085872.101134.05490730.477200.634504.317903.14260K562MATR3
CHERPENSG00000085872.103195.969802296.284600.476907.390205.76350K562MBNL1
CHERPENSG00000085872.101501.54590981.061800.613903.159801.75480K562NONO
CHERPENSG00000085872.102232.220101256.952000.828404.358503.04150K562PABPN1
CHERPENSG00000085872.101049.30300715.937500.551403.056601.63420K562PCBP1
CHERPENSG00000085872.101314.84810651.231301.0136010.797508.79520K562PCBP2
CHERPENSG00000085872.102580.750701494.014600.788503.556701.82980K562PPP1R8
CHERPENSG00000085872.101931.35080967.742300.9968012.4436010.84300K562PRPF8
CHERPENSG00000085872.101553.98900711.307401.1273020.1970018.47500K562PTBP1
CHERPENSG00000085872.103365.407503972.84210-0.239402.553801.53040K562PUM1
CHERPENSG00000085872.103211.938401915.344400.7457012.7509011.63180K562PUS1
CHERPENSG00000085872.103337.908201866.438700.838608.394407.38810K562RBM15
CHERPENSG00000085872.101444.69650681.665801.0835014.2592012.16770K562RBM22
CHERPENSG00000085872.101038.80510664.794900.643802.790301.40670K562RBM34
CHERPENSG00000085872.101794.521201232.403400.542007.308505.68820K562RCC2
CHERPENSG00000085872.101422.28570961.541900.564705.232103.79300K562RPS3
CHERPENSG00000085872.102303.908501149.302701.003205.249903.42610K562SF1
CHERPENSG00000085872.10828.42550427.496900.9544015.4081013.26610K562SF3B4
CHERPENSG00000085872.102652.910801400.818700.921202.899501.55110K562SFPQ
CHERPENSG00000085872.10317.75020460.73600-0.536003.615801.74340K562SND1
CHERPENSG00000085872.102169.867701320.233500.716702.971901.68410K562SNRNP200
CHERPENSG00000085872.101720.331301168.229200.558306.617804.82910K562SRFBP1
CHERPENSG00000085872.101444.75090697.399101.0507016.6091014.88570K562SRSF1
CHERPENSG00000085872.101577.73150928.199900.7652012.076309.74400K562SRSF4
CHERPENSG00000085872.101067.33560658.840900.695904.948303.46880K562SRSF5
CHERPENSG00000085872.101885.596202574.84670-0.449504.654502.84180K562SSRP1
CHERPENSG00000085872.101813.766302355.02160-0.376803.044101.72300K562STAU1
CHERPENSG00000085872.10190.10860403.84160-1.087003.594201.84530K562TAF15
CHERPENSG00000085872.101510.96690705.639401.098409.540308.10480K562TARDBP
CHERPENSG00000085872.10254.77860428.56210-0.750305.831203.49110K562TBRG4
CHERPENSG00000085872.101379.65390680.714601.019109.397207.77290K562TIA1
CHERPENSG00000085872.101250.57930668.395500.903706.733404.84950K562TRA2A
CHERPENSG00000085872.102017.827001380.176400.547802.471401.58620K562TRIM56
CHERPENSG00000085872.102428.092902961.69300-0.286602.829701.94290K562WDR3
CHERPENSG00000085872.101684.665501009.948700.738104.974803.17780K562XRN2
CHERPENSG00000085872.102174.742002711.74720-0.318402.930302.03930K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHERP is not available on ENCORE database.





2 RBPs can affect the splicing of CHERP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCHERPENSG00000085872.10chr19-1663043116630625166304311663052616630959166310760.287000.000000.00000longerK562AQR
A3SSCHERPENSG00000085872.10chr19-1663233116632528166323311663246516633862166341010.097000.000000.00001longerK562AQR
A3SSCHERPENSG00000085872.10chr19-1663122216631332166312221663131816631636166317230.060000.003050.01872longerK562AQR
A3SSCHERPENSG00000085872.10chr19-1663233116632528166323311663246516633862166341010.056000.000020.00171longerK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHERP is not avaliable on ENCORE database.