CTD-3222D19.2

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTD-3222D19.2 is not avaliable on ENCORE database.

Proteins bound to RNA

CTD-3222D19.2 RNA is bound by 38 proteins.

eCLIP assay for CTD-3222D19.2 is not avaliable on ENCORE database.

38 proteins are bound to CTD-3222D19.2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	16630133	16630210	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.90351	16.10260	HepG2	SF3B4
chr19	16630119	16630228	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.87032	6.90190	HepG2	AQR
chr19	16629935	16629984	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.32803	4.49605	HepG2	UPF1
chr19	16630088	16630161	-	3'-UTR,CDS,intron-Distal	3.17063	3.50786	HepG2	G3BP1
chr19	16629920	16630010	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.01114	5.22575	K562	UCHL5
chr19	16629938	16629986	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.23440	3.11282	HepG2	G3BP1
chr19	16630122	16630207	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.70071	11.17285	K562	SF3B4
chr19	16630136	16630178	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.41101	5.17013	K562	RBM15
chr19	16664631	16664678	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.19129	3.26789	K562	YBX3
chr19	16664556	16664607	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.39322	5.34770	HepG2	IGF2BP1
chr19	16664615	16664699	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.22100	4.53838	HepG2	IGF2BP1
chr19	16629225	16629266	-	3'-UTR,intron-Distal	3.50557	6.66613	K562	PUM2
chr19	16643408	16643540	-	CDS,intron-Distal,intron-Proximal	4.32762	6.78826	K562	FXR2
chr19	16661711	16661763	-	3'-UTR,intron-Distal	3.86917	13.15612	K562	PUM2
chr19	16638755	16638832	-	intron-Distal,intron-Proximal	3.00594	4.14020	K562	BUD13
chr19	16662952	16663010	-	3'-UTR,intron-Distal	3.38506	3.91951	K562	PUM2
chr19	16640450	16640458	-	intron-Distal,intron-Proximal	3.70076	5.00154	HepG2	AQR
chr19	16628769	16628837	-	3'-UTR,intron-Distal	3.85512	4.03249	HepG2	FUBP3
chr19	16662328	16662400	-	3'-UTR,intron-Distal	4.78440	9.04751	K562	UPF1
chr19	16664203	16664248	-	3'-UTR,intron-Distal	4.68650	6.71037	HepG2	UPF1
chr19	16662910	16662952	-	3'-UTR,intron-Distal	4.32859	4.66439	HepG2	AKAP1
chr19	16664499	16664562	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20460	3.88579	K562	IGF2BP2
chr19	16638874	16639068	-	CDS,intron-Distal,intron-Proximal	3.59570	7.17964	K562	ZNF800
chr19	16663800	16663851	-	3'-UTR,intron-Distal	4.09520	6.36332	HepG2	UPF1
chr19	16709297	16709390	-	intron-Distal	3.99234	3.82619	K562	ILF3
chr19	16661231	16661329	-	3'-UTR,intron-Distal	3.91637	7.57190	HepG2	UPF1
chr19	16703656	16703724	-	intron-Distal	4.09973	3.31905	K562	NONO
chr19	16631736	16631787	-	intron-Distal,intron-Proximal	4.39001	3.93614	HepG2	AQR
chr19	16700122	16700248	-	intron-Distal	3.09789	6.20329	HepG2	HNRNPM
chr19	16635988	16636062	-	CDS,intron-Distal,intron-Proximal	3.01092	4.36251	K562	PRPF8
chr19	16682259	16682309	-	intron-Distal,intron-Proximal	3.89959	7.53394	K562	AQR
chr19	16653164	16653235	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.36096	6.19730	K562	ZNF622
chr19	16663976	16664026	-	3'-UTR,intron-Distal	5.13194	8.99356	HepG2	UPF1
chr19	16628756	16628817	-	3'-UTR,intron-Distal	3.45846	4.54145	K562	DDX6
chr19	16728300	16728403	-	intron-Distal	3.45463	4.81844	HepG2	SUGP2
chr19	16662283	16662302	-	3'-UTR,intron-Distal	4.70634	5.24231	K562	UPF1
chr19	16640561	16640631	-	CDS,intron-Distal	3.52713	8.32162	K562	ZNF622
chr19	16636047	16636180	-	CDS,intron-Distal,intron-Proximal	4.85615	4.17937	HepG2	PCBP2
chr19	16629214	16629259	-	3'-UTR,intron-Distal	3.32136	4.50192	K562	FAM120A
chr19	16640418	16640450	-	intron-Distal,intron-Proximal	4.96379	7.23427	HepG2	AQR
chr19	16661128	16661193	-	3'-UTR,intron-Distal	3.14984	3.34573	K562	IGF2BP2
chr19	16632448	16632543	-	CDS,intron-Distal,intron-Proximal	4.12475	3.59236	HepG2	AQR
chr19	16732501	16732582	-	intron-Distal	4.25216	4.96496	K562	NONO
chr19	16662014	16662105	-	3'-UTR,intron-Distal	3.19393	11.74548	K562	UPF1
chr19	16643469	16643518	-	CDS,intron-Distal	3.25878	7.43930	K562	YBX3
chr19	16662154	16662198	-	3'-UTR,intron-Distal	4.53555	5.67997	HepG2	UPF1
chr19	16630714	16630766	-	intron-Distal,intron-Proximal	3.67364	5.29272	K562	BUD13
chr19	16636010	16636081	-	CDS,intron-Distal,intron-Proximal	3.05630	7.15382	HepG2	PRPF8
chr19	16634098	16634178	-	CDS,intron-Distal,intron-Proximal	3.70381	4.52919	HepG2	SF3B4
chr19	16631534	16631602	-	intron-Distal,intron-Proximal	3.89122	5.05356	HepG2	PRPF8
chr19	16646406	16646447	-	CDS,intron-Distal	3.26431	3.43213	K562	UCHL5
chr19	16664497	16664548	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.41842	3.34065	K562	IGF2BP1
chr19	16662132	16662230	-	3'-UTR,intron-Distal	3.61690	5.73852	HepG2	FUBP3
chr19	16704088	16704194	-	intron-Distal	3.93564	3.93293	K562	FUS
chr19	16636167	16636231	-	CDS,intron-Distal	4.17929	6.50713	K562	IGF2BP2
chr19	16633815	16633897	-	CDS,intron-Distal,intron-Proximal	3.48151	8.45537	HepG2	PRPF8
chr19	16662058	16662128	-	3'-UTR,intron-Distal	4.58648	20.93435	K562	PUM2
chr19	16661707	16661756	-	3'-UTR,intron-Distal	3.96505	5.73324	K562	FAM120A
chr19	16643397	16643449	-	CDS,intron-Distal,intron-Proximal	5.78298	8.32974	K562	DDX24
chr19	16664241	16664254	-	3'-UTR,intron-Distal	3.35645	6.82132	K562	YBX3
chr19	16725442	16725536	-	intron-Distal	4.03019	3.07008	K562	NONO
chr19	16630832	16630898	-	intron-Distal,intron-Proximal	3.21457	5.33133	K562	BUD13
chr19	16662970	16662984	-	3'-UTR,intron-Distal	4.18070	5.15345	K562	UPF1
chr19	16728014	16728072	-	intron-Distal	4.03313	4.03833	K562	HNRNPM
chr19	16638889	16638952	-	CDS,intron-Distal,intron-Proximal	3.36592	3.77614	HepG2	G3BP1
chr19	16687372	16687427	-	CDS,intron-Distal,intron-Proximal	4.43466	3.75568	K562	SLTM
chr19	16705830	16705897	-	intron-Distal	3.38019	3.48567	K562	SLTM
chr19	16629082	16629142	-	3'-UTR,intron-Distal	4.14534	5.97891	K562	FAM120A
chr19	16664299	16664397	-	3'-UTR,intron-Distal	4.08634	3.98353	K562	RBM15
chr19	16700161	16700219	-	intron-Distal	3.82561	6.51515	K562	HNRNPM
chr19	16636010	16636042	-	intron-Distal,intron-Proximal	4.34233	5.47926	K562	AQR
chr19	16643873	16643957	-	CDS,intron-Distal	4.64744	4.08604	HepG2	PPIG
chr19	16636457	16636544	-	CDS,intron-Distal,intron-Proximal	3.64520	5.47851	K562	SF3B4
chr19	16641507	16641590	-	CDS,intron-Distal,intron-Proximal	4.28452	5.93840	HepG2	PRPF8
chr19	16629392	16629410	-	3'-UTR,intron-Distal	3.72443	4.24288	K562	UPF1
chr19	16633936	16634047	-	CDS,intron-Distal	3.21742	6.34759	K562	IGF2BP2
chr19	16652800	16652855	-	CDS,intron-Distal,intron-Proximal	3.71629	9.42776	K562	ZNF622
chr19	16643406	16643446	-	CDS,intron-Distal,intron-Proximal	3.78379	3.14999	HepG2	GRWD1
chr19	16643909	16643963	-	CDS,intron-Distal,intron-Proximal	4.08868	3.96990	K562	BUD13
chr19	16732600	16732656	-	intron-Distal	4.34486	3.34098	HepG2	HNRNPM
chr19	16641342	16641376	-	intron-Distal,intron-Proximal	4.04985	5.47926	K562	AQR
chr19	16629198	16629258	-	3'-UTR,intron-Distal	3.23417	4.00685	K562	TIA1
chr19	16652675	16652753	-	CDS,intron-Distal,intron-Proximal	5.38155	10.28526	K562	UCHL5
chr19	16630253	16630350	-	intron-Distal,intron-Proximal	3.78808	4.51074	HepG2	RBFOX2
chr19	16629358	16629412	-	3'-UTR,intron-Distal	3.55788	4.22460	K562	RBM15
chr19	16652678	16652722	-	CDS,intron-Distal,intron-Proximal	3.55925	4.19763	K562	DDX24
chr19	16661459	16661508	-	3'-UTR,intron-Distal	4.63601	3.70195	HepG2	UPF1
chr19	16716432	16716586	-	intron-Distal	4.23260	7.75946	HepG2	PCBP2
chr19	16628995	16629046	-	3'-UTR,intron-Distal	3.70610	6.80293	K562	YBX3
chr19	16663501	16663550	-	3'-UTR,intron-Distal	3.30653	4.51679	HepG2	UPF1
chr19	16663488	16663558	-	3'-UTR,intron-Distal	4.05382	7.46349	HepG2	AKAP1
chr19	16738088	16738169	-	intron-Distal	4.48499	5.19780	K562	NONO
chr19	16662148	16662212	-	3'-UTR,intron-Distal	3.85995	11.75503	K562	UPF1
chr19	16641399	16641445	-	CDS,intron-Distal	4.93993	4.67689	HepG2	PPIG
chr19	16643518	16643548	-	CDS,intron-Distal	3.94537	8.14591	K562	YBX3
chr19	16683053	16683201	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.49481	5.92186	HepG2	UPF1
chr19	16664352	16664408	-	3'-UTR,intron-Distal	3.90000	3.50232	K562	IGF2BP1
chr19	16629354	16629397	-	3'-UTR,intron-Distal	3.04745	3.13705	K562	BUD13
chr19	16664303	16664391	-	3'-UTR,intron-Distal	5.71917	12.32677	HepG2	UPF1
chr19	16652828	16652924	-	CDS,intron-Distal,intron-Proximal	3.22455	7.99874	HepG2	BUD13
chr19	16682924	16682992	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.88442	4.79919	K562	GEMIN5
chr19	16732527	16732585	-	intron-Distal	4.27042	4.31871	HepG2	HNRNPM
chr19	16663242	16663333	-	3'-UTR,intron-Distal,intron-Proximal	6.17631	22.71172	HepG2	UPF1
chr19	16732567	16732641	-	intron-Distal	3.54221	4.31711	K562	EXOSC5
chr19	16683105	16683191	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.99692	18.54040	HepG2	DDX3X
chr19	16738189	16738268	-	intron-Distal	3.36152	3.14365	K562	NONO
chr19	16730520	16730597	-	intron-Distal	3.01150	3.31508	HepG2	HNRNPM
chr19	16631728	16631775	-	intron-Distal,intron-Proximal	4.22646	4.57682	HepG2	SF3B4
chr19	16678920	16678977	-	CDS,intron-Distal	4.17289	3.66655	K562	YBX3
chr19	16632253	16632335	-	CDS,intron-Distal,intron-Proximal	4.39579	5.97994	K562	AQR
chr19	16660802	16660886	-	3'-UTR,intron-Distal	3.24889	5.17928	K562	YBX3
chr19	16629489	16629651	-	3'-UTR,intron-Distal,intron-Proximal	4.39890	13.41308	HepG2	UPF1
chr19	16732536	16732683	-	intron-Distal	4.38345	5.71019	K562	FUS
chr19	16629161	16629226	-	3'-UTR,intron-Distal	3.52931	5.09017	HepG2	UPF1
chr19	16642873	16642963	-	intron-Distal	3.70483	3.06084	HepG2	HNRNPK
chr19	16663801	16663844	-	3'-UTR,intron-Distal	4.32859	4.66439	HepG2	AKAP1
chr19	16672540	16672677	-	intron-Distal	4.01394	3.99137	K562	NONO
chr19	16629785	16629869	-	3'-UTR,intron-Distal	3.59520	4.54434	HepG2	UPF1
chr19	16631636	16631719	-	CDS,intron-Distal,intron-Proximal	4.09012	4.13746	HepG2	PPIG
chr19	16661508	16661571	-	3'-UTR,intron-Distal,intron-Proximal	4.18439	4.93514	HepG2	UPF1
chr19	16678755	16678819	-	intron-Distal,intron-Proximal	4.41835	5.30668	HepG2	RBFOX2
chr19	16629073	16629141	-	3'-UTR,intron-Distal	4.10046	10.04737	K562	UPF1
chr19	16664198	16664207	-	3'-UTR,intron-Distal,intron-Proximal	4.45729	4.31428	K562	YBX3
chr19	16652633	16652701	-	CDS,intron-Distal,intron-Proximal	4.34878	6.23016	HepG2	PRPF8
chr19	16660931	16660964	-	3'-UTR,intron-Distal	3.50414	4.14074	K562	UPF1
chr19	16653162	16653233	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.44148	6.02643	HepG2	DDX3X
chr19	16663475	16663557	-	3'-UTR,intron-Distal	4.12724	22.25764	K562	UPF1
chr19	16682251	16682328	-	CDS,intron-Distal,intron-Proximal	4.37839	3.89565	K562	PRPF8
chr19	16643219	16643277	-	intron-Distal	4.38443	4.53454	K562	PRPF8
chr19	16643353	16643420	-	CDS,intron-Distal,intron-Proximal	4.29121	6.81564	HepG2	PRPF8
chr19	16709338	16709395	-	intron-Distal	3.84093	3.07008	K562	NONO
chr19	16629799	16629896	-	3'-UTR,intron-Distal,intron-Proximal	3.47712	4.59151	HepG2	G3BP1
chr19	16630825	16630886	-	intron-Distal,intron-Proximal	3.68358	5.30520	K562	UCHL5
chr19	16662901	16662955	-	3'-UTR,intron-Distal	5.20030	16.18694	K562	UPF1
chr19	16647943	16648089	-	intron-Distal	4.02544	3.63122	HepG2	PRPF4
chr19	16630915	16630970	-	CDS,intron-Distal,intron-Proximal	3.26867	4.22621	HepG2	PRPF8
chr19	16641645	16641694	-	CDS,intron-Distal,intron-Proximal	3.86984	4.68902	HepG2	PPIG
chr19	16628928	16628991	-	3'-UTR,intron-Distal	3.46282	6.98582	K562	UPF1
chr19	16682859	16683013	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.68319	23.73436	HepG2	DDX3X
chr19	16638960	16639067	-	CDS,intron-Distal,intron-Proximal	3.47606	3.69481	K562	UCHL5
chr19	16705949	16706066	-	intron-Distal	3.72731	5.70158	K562	EWSR1
chr19	16629141	16629208	-	3'-UTR,intron-Distal	3.09132	3.20150	HepG2	AKAP1
chr19	16682309	16682323	-	intron-Distal,intron-Proximal	3.51834	5.35619	K562	AQR
chr19	16641578	16641628	-	CDS,intron-Distal,intron-Proximal	4.35044	4.67299	K562	DDX24
chr19	16664207	16664229	-	3'-UTR,intron-Distal	4.76005	12.71857	K562	YBX3
chr19	16631651	16631680	-	CDS,intron-Distal	3.32466	4.74755	K562	ZNF622
chr19	16664498	16664556	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.75591	5.85178	HepG2	IGF2BP1
chr19	16636444	16636490	-	CDS,intron-Distal,intron-Proximal	3.22322	3.24162	HepG2	G3BP1
chr19	16629216	16629264	-	3'-UTR,intron-Distal	3.28134	3.18141	HepG2	FUBP3
chr19	16631721	16631775	-	CDS,intron-Distal,intron-Proximal	5.06920	5.40008	K562	SF3B4
chr19	16683013	16683105	-	CDS,intron-Distal,intron-Proximal	4.12335	18.40188	HepG2	DDX3X
chr19	16629146	16629272	-	3'-UTR,intron-Distal	3.22871	18.36784	K562	UPF1
chr19	16652644	16652728	-	CDS,intron-Distal,intron-Proximal	4.45624	4.62947	HepG2	AQR
chr19	16663496	16663562	-	3'-UTR,intron-Distal	4.74907	10.60563	HepG2	FUBP3
chr19	16733474	16733552	-	intron-Distal	3.38566	5.94249	HepG2	HNRNPM
chr19	16636042	16636054	-	CDS,intron-Distal,intron-Proximal	4.28459	4.98250	K562	AQR
chr19	16661206	16661332	-	3'-UTR,intron-Distal	4.62065	11.39949	K562	AKAP1
chr19	16646458	16646547	-	intron-Distal,intron-Proximal	4.18249	3.93614	HepG2	AQR
chr19	16678774	16678844	-	CDS,intron-Distal,intron-Proximal	3.53364	4.88100	K562	AQR
chr19	16664308	16664401	-	3'-UTR,intron-Distal	4.71679	6.14341	HepG2	IGF2BP1
chr19	16663191	16663242	-	3'-UTR,intron-Distal,intron-Proximal	4.42124	8.31857	HepG2	UPF1
chr19	16630549	16630629	-	intron-Distal,intron-Proximal	3.06588	3.51696	K562	KHSRP
chr19	16664229	16664241	-	3'-UTR,intron-Distal	4.12009	11.47083	K562	YBX3
chr19	16662617	16662662	-	3'-UTR,intron-Distal	4.04277	6.86497	HepG2	UPF1
chr19	16653162	16653239	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.30992	4.39112	K562	DDX3X
chr19	16628897	16628959	-	3'-UTR,intron-Distal	4.32492	7.45604	K562	PUM2
chr19	16640631	16640712	-	CDS,intron-Distal,intron-Proximal	3.06389	9.17031	K562	ZNF622
chr19	16705744	16705888	-	intron-Distal	4.20407	5.13779	K562	FUS
chr19	16630375	16630434	-	CDS,intron-Distal,intron-Proximal	4.78601	6.59451	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	CTD-3222D19.2	ENSG00000141979.4	chr19	-	16675847	16675943			16665962	16666208	16677342	16677468	0.07700	0.00262	0.02744	included	K562	AQR
SE	CTD-3222D19.2	ENSG00000141979.4	chr19	-	16675847	16675943			16665962	16666208	16677342	16677468	0.07000	0.00017	0.00426	included	K562	HNRNPC

CTD-3222D19.2

General Information

Functions

Localization

Domains (AlphaFold: CTD-3222D19.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTD-3222D19.2 is not avaliable on ENCORE database.

38 proteins are bound to CTD-3222D19.2 RNA:

eCLIP assay for CTD-3222D19.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTD-3222D19.2 is not available on ENCORE database.

No RBPs affect the gene expression of CTD-3222D19.2 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CTD-3222D19.2 is not available on ENCORE database.

2 RBPs can affect the splicing of CTD-3222D19.2 :

The Knockdown/knockout RNA-Seq assay for CTD-3222D19.2 is not avaliable on ENCORE database.