RAB2A

General Information

Gene Name       : RAB2A
Gene ID             : ENSG00000104388.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB2A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB2AENSG00000104388.1474.0266.1870.10ENCSR000AEF
HepG2RAB2AENSG00000104388.1445.8567.2256.53ENCSR985KAT
K562RAB2AENSG00000104388.1445.2566.4455.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB2A is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB2A RNA is bound by 18 proteins.  







eCLIP assay for RAB2A is not avaliable on ENCORE database.





18 proteins are bound to RAB2A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr86153427261534362+3'-UTR4.494875.48475K562TIA1
chr86153350061533623+3'-UTR5.669808.26964HepG2FUBP3
chr86153334461533365+3'-UTR4.000067.51369K562IGF2BP2
chr86153336561533427+3'-UTR3.2838111.28046K562IGF2BP2
chr86153113961531221+3'-UTR,CDS,intron-Proximal5.094174.80701K562GPKOW
chr86148465661484672+3'-UTR,CDS3.480726.09506K562IGF2BP2
chr86149677861496807+3'-UTR,CDS3.199615.72406K562IGF2BP2
chr86153379961533844+3'-UTR3.498884.90692K562PUM2
chr86153352261533625+3'-UTR3.949236.89441K562KHSRP
chr86149676561496778+3'-UTR,CDS,intron-Proximal3.538646.51942K562IGF2BP2
chr86153355561533612+3'-UTR4.994713.81167HepG2SUB1
chr86153431561534378+3'-UTR3.602818.47986K562PUM2
chr86142954261429642+5'-UTR3.406625.37861K562GEMIN5
chr86142954361429655+5'-UTR3.326047.96348HepG2NCBP2
chr86142953861429635+5'-UTR3.7470912.41221K562DDX3X
chr86142969461429783+5'-UTR,CDS3.339026.72797HepG2DDX3X
chr86142952461429694+5'-UTR4.4922729.03261HepG2DDX3X
chr86142958061429659+5'-UTR3.504464.61386K562DROSHA
chr86147142261471483+5'-UTR,CDS,intron-Distal,intron-Proximal3.763105.61746K562LIN28B
chr86142967161429782+5'-UTR,CDS3.676908.86967K562GEMIN5
chr86143302461433080+intron-Distal3.356235.01093HepG2QKI
chr86148476361484811+intron-Distal,intron-Proximal4.578406.93191K562KHSRP
chr86150381161503912+intron-Distal4.152053.09122HepG2PTBP1
chr86143123461431369+intron-Distal4.992668.61835K562TARDBP
chr86150780361507934+intron-Distal4.048963.95960K562SAFB2
chr86153101561531103+intron-Distal,intron-Proximal4.086204.37030K562KHSRP
chr86153088861530992+intron-Distal3.829426.83037K562KHSRP
chr86145596461456063+intron-Distal5.402346.42900HepG2PTBP1
chr86143670061436983+intron-Distal3.492236.50853HepG2MATR3
chr86147628461476398+intron-Distal4.6915811.85119HepG2QKI
chr86151274361512852+intron-Distal3.070493.36168K562SAFB2
chr86150657561506656+intron-Distal3.691423.10466K562SAFB2
chr86152106961521181+intron-Distal5.105506.42900HepG2PTBP1
chr86147445361474632+intron-Distal4.396755.04209K562MATR3
chr86150797061508181+intron-Distal3.744853.49896K562KHDRBS1
chr86148470061484742+intron-Proximal3.975333.89294K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB2A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB2A is not available on ENCORE database.

  • 75 RBPs can affect the levels of RAB2A.  








The Knockdown/knockout RNA-Seq assay for RAB2A is not available on ENCORE database.





75 RBPs can affect the gene expression of RAB2A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB2AENSG00000104388.10644.67930964.83110-0.581705.369904.04500HepG2ADAR
RAB2AENSG00000104388.101544.510401221.126200.338803.290902.45850HepG2CALR
RAB2AENSG00000104388.10898.648001138.91410-0.341802.298901.66420HepG2CPSF6
RAB2AENSG00000104388.101124.22250793.461800.502604.854203.98240HepG2DDX21
RAB2AENSG00000104388.10996.09680776.713200.358802.924501.98260HepG2DDX24
RAB2AENSG00000104388.102521.171201650.155100.611406.699205.76780HepG2DDX3X
RAB2AENSG00000104388.101551.613301104.819700.489905.061703.34120HepG2DDX47
RAB2AENSG00000104388.101631.729001183.825500.462804.341803.08500HepG2DDX5
RAB2AENSG00000104388.101318.43370995.722200.404904.846903.99650HepG2DKC1
RAB2AENSG00000104388.10581.30490962.93040-0.7281015.0885013.68790HepG2DNAJC2
RAB2AENSG00000104388.101223.02460955.174300.356502.435901.56840HepG2EEF2
RAB2AENSG00000104388.10941.206901362.69750-0.533904.585703.83310HepG2EIF2S1
RAB2AENSG00000104388.101029.728801466.19260-0.509803.166302.43320HepG2EIF4B
RAB2AENSG00000104388.10953.722001331.97340-0.481902.778101.96150HepG2EIF4G2
RAB2AENSG00000104388.101316.788801017.063300.372503.424402.49340HepG2EWSR1
RAB2AENSG00000104388.101116.805701519.31860-0.444003.551302.77390HepG2FXR1
RAB2AENSG00000104388.10977.319701409.47970-0.528304.369503.54150HepG2G3BP1
RAB2AENSG00000104388.101299.39330980.867800.405601.966401.41020HepG2HNRNPA1
RAB2AENSG00000104388.10952.775001233.94030-0.373104.499603.60990HepG2HNRNPF
RAB2AENSG00000104388.101026.402201427.01820-0.475404.335703.47790HepG2HNRNPK
RAB2AENSG00000104388.101008.957201284.08490-0.347904.677503.81800HepG2HNRNPL
RAB2AENSG00000104388.101793.414501232.133600.541505.606604.74310HepG2HNRNPLL
RAB2AENSG00000104388.10707.172401083.80520-0.6160010.646609.52190HepG2HNRNPU
RAB2AENSG00000104388.101007.865901215.07990-0.269702.096201.45980HepG2IGF2BP1
RAB2AENSG00000104388.10683.591301432.73690-1.0676016.0991014.63600HepG2IGF2BP2
RAB2AENSG00000104388.101075.980701528.38210-0.506403.902003.16400HepG2MATR3
RAB2AENSG00000104388.101072.100401397.71600-0.382604.581503.60050HepG2NOL12
RAB2AENSG00000104388.10808.581901092.46920-0.434103.267702.45540HepG2NSUN2
RAB2AENSG00000104388.101547.91760903.888400.776005.097003.86080HepG2PABPC1
RAB2AENSG00000104388.101279.581101072.802800.254202.449401.64790HepG2PARN
RAB2AENSG00000104388.10672.11820880.27770-0.389204.033403.11780HepG2PRPF4
RAB2AENSG00000104388.101745.287901334.175800.387403.128402.50080HepG2PUF60
RAB2AENSG00000104388.10890.758601060.06630-0.251002.414901.82920HepG2PUS1
RAB2AENSG00000104388.101785.706501000.485500.835705.864604.86470HepG2RAVER1
RAB2AENSG00000104388.10899.541101419.35060-0.6580011.4413010.54070HepG2RBM22
RAB2AENSG00000104388.101229.693201490.44820-0.277402.809602.26560HepG2NELFE
RAB2AENSG00000104388.101107.040301388.22800-0.326503.700103.00110HepG2RECQL
RAB2AENSG00000104388.101061.960301329.24110-0.323902.483501.83080HepG2RPLP0
RAB2AENSG00000104388.10995.97540693.129100.522903.851502.94210HepG2RRP9
RAB2AENSG00000104388.101783.882901301.301100.455002.982002.28120HepG2SF3A3
RAB2AENSG00000104388.101555.215501219.610900.350602.852702.13610HepG2SF3B1
RAB2AENSG00000104388.101890.915701455.355500.377606.104705.46950HepG2SRSF1
RAB2AENSG00000104388.10959.208201317.21090-0.457607.218606.27380HepG2SRSF5
RAB2AENSG00000104388.10991.981301212.30210-0.289402.924602.21220HepG2SRSF7
RAB2AENSG00000104388.101689.699701391.879000.279603.501002.93940HepG2SSB
RAB2AENSG00000104388.101029.104201498.11160-0.541808.425207.43870HepG2SUCLG1
RAB2AENSG00000104388.101083.111501308.23550-0.272402.349501.82580HepG2TAF15
RAB2AENSG00000104388.10557.549001213.68190-1.122206.675905.09960HepG2TBRG4
RAB2AENSG00000104388.10611.423601053.18270-0.7845012.5160011.58470HepG2TIAL1
RAB2AENSG00000104388.101613.283201211.286600.413403.163902.49510HepG2U2AF1
RAB2AENSG00000104388.10857.013101114.19350-0.378604.620403.87820HepG2UTP3
RAB2AENSG00000104388.101892.563801269.239000.5763015.7019014.66590HepG2ZNF622
RAB2AENSG00000104388.101727.898001290.399500.421106.997606.15420K562AGGF1
RAB2AENSG00000104388.101879.599801418.021400.406403.607402.44830K562AKAP8
RAB2AENSG00000104388.101951.484201342.735800.539306.901705.83140K562AKAP8L
RAB2AENSG00000104388.102145.754301652.682500.376603.452702.81200K562AQR
RAB2AENSG00000104388.102040.506301408.884400.534309.736607.89330K562ATP5C1
RAB2AENSG00000104388.101302.063301005.969700.372102.678201.82020K562BOP1
RAB2AENSG00000104388.101868.482101444.775800.370905.280604.01720K562DKC1
RAB2AENSG00000104388.10795.218601064.27360-0.420405.183003.50430K562EIF2S1
RAB2AENSG00000104388.10742.48170915.50960-0.302202.344701.60890K562EIF3G
RAB2AENSG00000104388.10592.03610911.62730-0.622805.030503.40590K562EIF4B
RAB2AENSG00000104388.101745.398402073.97070-0.248802.428901.54540K562EIF4G2
RAB2AENSG00000104388.101359.924101034.573800.394402.246001.61830K562G3BP2
RAB2AENSG00000104388.10604.99950870.59070-0.525104.636302.04120K562GRWD1
RAB2AENSG00000104388.10800.103701001.73860-0.324202.314701.76210K562HNRNPC
RAB2AENSG00000104388.10703.84520894.51440-0.345802.423401.36900K562HNRNPF
RAB2AENSG00000104388.101347.046301056.947300.349802.210501.38230K562HNRNPM
RAB2AENSG00000104388.10826.640201211.64860-0.551607.727006.24290K562HNRNPU
RAB2AENSG00000104388.10821.043201181.53450-0.525103.863602.56970K562IGF2BP2
RAB2AENSG00000104388.101936.379201424.920100.442404.608103.49900K562KIF1C
RAB2AENSG00000104388.101754.007201364.046300.362703.239802.05150K562MAK16
RAB2AENSG00000104388.10868.662301239.76540-0.513204.822503.56790K562MATR3
RAB2AENSG00000104388.102206.650601596.278500.467006.085504.63620K562MBNL1
RAB2AENSG00000104388.101677.748401118.880800.584404.645203.40770K562NAA15
RAB2AENSG00000104388.10944.601001345.00380-0.5098010.346909.02950K562NSUN2
RAB2AENSG00000104388.101048.54100667.987400.650406.661705.49730K562PRPF8
RAB2AENSG00000104388.10694.55810898.15260-0.370902.315301.49390K562PSIP1
RAB2AENSG00000104388.103190.349502262.874100.495506.260305.03700K562PUF60
RAB2AENSG00000104388.102990.734102406.811600.313303.578402.35490K562PUM1
RAB2AENSG00000104388.102339.690101331.506900.8132013.0835011.94860K562PUS1
RAB2AENSG00000104388.101891.099801297.451100.543409.303108.23870K562RBM15
RAB2AENSG00000104388.10848.696801359.72170-0.6800015.3287013.37890K562SRPK2
RAB2AENSG00000104388.10875.897001117.18740-0.351002.617001.60110K562SRSF5
RAB2AENSG00000104388.10962.25790737.859700.383003.441202.52670K562SYNCRIP
RAB2AENSG00000104388.10558.38270863.87900-0.629605.341704.00230K562TIAL1
RAB2AENSG00000104388.10994.061801220.29950-0.295802.319301.51720K562WDR3
RAB2AENSG00000104388.10860.863501268.97080-0.559807.936906.57350K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB2A is not available on ENCORE database.





4 RBPs can affect the splicing of RAB2A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB2AENSG00000104388.10chr8+614846046148467261471410614714826149676661496849-0.081000.000000.00000excludedK562AQR
SERAB2AENSG00000104388.10chr8+615044166150452861497281614973746153113861531207-0.063000.000000.00001excludedK562AQR
SERAB2AENSG00000104388.10chr8+615044166150452861497281614973746153113861531207-0.079000.000000.00000excludedK562PUS1
SERAB2AENSG00000104388.10chr8+615044166150452861497281614973746153113861531207-0.068000.000210.00634excludedK562U2AF1
SERAB2AENSG00000104388.10chr8+6148230161482429614714106147148261484604614846720.065000.000010.00021includedK562HNRNPC
MXERAB2AENSG00000104388.10chr8+61497256614973746150441661504528614967666149684961531138615312070.075000.000000.000001includedK562AQR
MXERAB2AENSG00000104388.10chr8+61497256614973746150438761504528614967666149684961531138615312070.074000.000000.000001includedK562AQR
MXERAB2AENSG00000104388.10chr8+61497178614973746150441661504528614967666149684961531138615312070.068000.000000.000001includedK562AQR
MXERAB2AENSG00000104388.10chr8+61497178614973746150438761504528614967666149684961531138615312070.067000.000000.000001includedK562AQR
MXERAB2AENSG00000104388.10chr8+61496766614968496153113861531207614714106147148261533232615334540.092000.000000.000001includedK562AQR
MXERAB2AENSG00000104388.10chr8+6150441661504528615310726153120761497256614973746153323261533500-0.114000.009850.062572includedK562AQR
MXERAB2AENSG00000104388.10chr8+6147141061471482615311386153120761429782614298126153323261533507-0.125000.012920.077952includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB2A is not avaliable on ENCORE database.