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FUBP3
eCLIP
in HepG2
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
571
571-control
Exp_UID
571
571
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR486YGP
ENCSR056RZV
ENCODE_alias
gene-yeo:571
gene-yeo:571-control
RBP
FUBP3
FUBP3
Cell_Line
HepG2
HepG2
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB964AJF
ENCAB964AJF
Antibody
A303-012A
A303-012A
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
335
358
Replicate Information
Rep_UID
571_01
571_02
571_INPUT
Exp UID
571
571
571
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB122BNY
ENCLB773TIT
ENCLB370HZY
ENCODE_alias
gene-yeo:571_01
gene-yeo:571_02
gene-yeo:571_INPUT
Biosample Name
HepG2_111915
HepG2_091615
HepG2_111915
Biosample_ENCODE_Accession
ENCBS492SDY
ENCBS621TAB
ENCBS492SDY
Biosample_ENCODE_Alias
gene-yeo:HepG2_111915
gene-yeo:HepG2_091615
gene-yeo:HepG2_111915
Cell_Line
HepG2
HepG2
HepG2
Culture_Start_Date
2015-11-19
2015-09-16
2015-11-19
Culture_End_Date
2015-12-10
2015-10-09
2015-12-10
Passage
4
3
4
QC Stats
Experiment QC
571
571-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
571_01
571_02
571_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
571_01
571_02
571_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
A01
C01
none
inline_barcode_2
B06
D08fixed
none
i5_barcode
504
504
503
i7_barcode
702
702
701
Sequencing Information
Rep_UID
571_01
571_02
571_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/571.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
571
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
571.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
571
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=571)
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