PDZD8

General Information

Gene Name       : PDZD8
Gene ID             : ENSG00000165650.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDZD8)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDZD8ENSG00000165650.1111.3210.5610.94ENCSR000AEF
HepG2PDZD8ENSG00000165650.1110.0014.8912.45ENCSR985KAT
K562PDZD8ENSG00000165650.1132.6835.3334.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDZD8 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDZD8 RNA is bound by 23 proteins.  







eCLIP assay for PDZD8 is not avaliable on ENCORE database.





23 proteins are bound to PDZD8 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10119042459119042489-3'-UTR,intron-Distal3.130494.82028HepG2FUBP3
chr10119042168119042280-3'-UTR,intron-Distal4.0756717.33455HepG2FUBP3
chr10119042184119042257-3'-UTR,intron-Distal3.235094.10307K562TIA1
chr10119042406119042459-3'-UTR,intron-Distal3.164117.20162HepG2FUBP3
chr10119042419119042481-3'-UTR,intron-Distal4.059073.54514K562TIA1
chr10119042179119042263-3'-UTR,intron-Distal4.422075.28210HepG2TIA1
chr10119042407119042507-3'-UTR,intron-Distal3.4596520.80967K562PUM2
chr10119042189119042287-3'-UTR,intron-Distal4.419823.78849HepG2TIAL1
chr10119134726119134791-5'-UTR,CDS,intron-Distal6.2548720.18773HepG2DDX3X
chr10119134829119134941-5'-UTR,intron-Distal5.6460552.73035HepG2DDX3X
chr10119044445119044510-CDS,intron-Distal4.177793.31982HepG2IGF2BP1
chr10119043045119043183-CDS,intron-Distal3.788624.62564HepG2FXR2
chr10119078426119078485-CDS,intron-Distal3.948827.58784HepG2BCLAF1
chr10119134378119134428-CDS,intron-Distal3.9938310.53730K562RBM15
chr10119134243119134370-CDS,intron-Distal3.458045.41108K562RBM15
chr10119134596119134709-CDS,intron-Distal4.7005227.60462HepG2DDX3X
chr10119044550119044634-CDS,intron-Distal,intron-Proximal3.013564.95835K562IGF2BP1
chr10119133923119133964-CDS,intron-Distal3.6751110.25633K562RBM15
chr10119133972119134037-CDS,intron-Distal,intron-Proximal3.760089.64779K562RBM15
chr10119134288119134372-CDS,intron-Distal3.354965.86107HepG2PPIG
chr10119134428119134451-CDS,intron-Distal4.557885.85529K562RBM15
chr10119134310119134353-CDS,intron-Distal5.892728.97384HepG2DDX3X
chr10119043518119043621-CDS,intron-Distal4.045654.38861K562SAFB
chr10119043923119043970-CDS,intron-Distal3.252724.11795K562YBX3
chr10119078376119078426-CDS,intron-Distal,intron-Proximal3.438445.45876HepG2BCLAF1
chr10119043322119043351-CDS,intron-Distal3.201557.64776HepG2IGF2BP1
chr10119043351119043377-CDS,intron-Distal3.887956.75303HepG2IGF2BP1
chr10119134520119134553-CDS,intron-Distal4.086343.48187K562RBM15
chr10119043311119043391-CDS,intron-Distal3.053005.28972K562IGF2BP1
chr10119134507119134575-CDS,intron-Distal4.9164311.72256HepG2DDX3X
chr10119134037119134081-CDS,intron-Distal,intron-Proximal6.2873912.14650K562RBM15
chr10119124376119124458-intron-Distal5.7014210.98212K562PTBP1
chr10119126034119126109-intron-Distal4.895094.65580K562GTF2F1
chr10119126429119126521-intron-Distal5.0129319.49221HepG2QKI
chr10119124392119124475-intron-Distal4.801368.88051HepG2PCBP2
chr10119078809119078922-intron-Distal4.258094.13641K562TARDBP
chr10119124390119124455-intron-Distal3.992843.74583HepG2PTBP1
chr10119089410119089506-intron-Distal6.6899518.52659HepG2PCBP2
chr10119133740119133790-intron-Distal4.972647.58013K562RBM15
chr10119124203119124287-intron-Distal3.723354.19039HepG2PTBP1
chr10119123686119123776-intron-Distal3.6714212.50115K562HNRNPL
chr10119071271119071391-intron-Distal4.506824.80665HepG2QKI
chr10119132208119132267-intron-Distal4.029693.79026K562HNRNPM
chr10119109456119109583-intron-Distal4.300793.16986HepG2QKI
chr10119126413119126530-intron-Distal6.9522625.28461K562QKI
chr10119126022119126106-intron-Distal6.6237314.29597K562ZRANB2
chr10119133756119133867-intron-Distal3.163597.05786HepG2EFTUD2
chr10119124189119124281-intron-Distal5.913099.95676K562PTBP1
chr10119127859119127954-intron-Distal5.818527.54661K562QKI
chr10119127726119127833-intron-Distal4.2034613.80525K562KHSRP
chr10119077849119077957-intron-Distal4.253573.30440HepG2QKI
chr10119089411119089495-intron-Distal4.062038.09613K562ILF3
chr10119127847119127963-intron-Distal4.9495313.23682HepG2QKI
chr10119127847119127915-intron-Distal3.992463.92684K562KHSRP
chr10119133799119133825-intron-Distal4.504593.98353K562RBM15
chr10119110731119110936-intron-Distal4.3335610.59991K562KHSRP
chr10119101856119101923-intron-Distal3.421716.94616K562TARDBP
chr10119078232119078349-intron-Distal,intron-Proximal5.7267115.20176K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDZD8 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDZD8 is not available on ENCORE database.

  • 114 RBPs can affect the levels of PDZD8.  








The Knockdown/knockout RNA-Seq assay for PDZD8 is not available on ENCORE database.





114 RBPs can affect the gene expression of PDZD8 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDZD8ENSG00000165650.71394.662901037.355900.426902.400401.52220HepG2ABCF1
PDZD8ENSG00000165650.7769.97250564.886400.446703.155502.09360HepG2ADAR
PDZD8ENSG00000165650.7661.18970821.46560-0.313102.739201.97580HepG2AKAP8L
PDZD8ENSG00000165650.7651.321301224.29530-0.9105020.9256019.35710HepG2AUH
PDZD8ENSG00000165650.71351.53410856.833500.657408.013607.05890HepG2BOP1
PDZD8ENSG00000165650.71419.039301042.473800.444803.677602.79530HepG2CIRBP
PDZD8ENSG00000165650.7996.32260786.611700.340902.231801.60620HepG2CPSF6
PDZD8ENSG00000165650.7650.31430849.72890-0.385904.598003.67970HepG2DAZAP1
PDZD8ENSG00000165650.7404.93600756.17040-0.9010018.1536016.45420HepG2DDX19B
PDZD8ENSG00000165650.7517.88640657.15850-0.343602.086701.48820HepG2DDX21
PDZD8ENSG00000165650.71097.16640643.207600.7703011.137409.34750HepG2DDX24
PDZD8ENSG00000165650.7883.51740591.953800.577704.183302.63950HepG2DDX27
PDZD8ENSG00000165650.71220.94860956.789200.351602.726101.43810HepG2DDX47
PDZD8ENSG00000165650.7824.281101091.20950-0.404702.425801.84390HepG2DDX6
PDZD8ENSG00000165650.71146.51220782.219000.551508.435407.37930HepG2DKC1
PDZD8ENSG00000165650.7400.26680568.84040-0.507104.553103.66890HepG2DNAJC21
PDZD8ENSG00000165650.7448.46220563.75530-0.330102.717102.06990HepG2DNAJC2
PDZD8ENSG00000165650.7855.12650605.254200.498502.932001.78740HepG2AGO1
PDZD8ENSG00000165650.71028.28610620.665100.7283010.049008.24890HepG2EIF3G
PDZD8ENSG00000165650.7855.123101159.34140-0.439102.927102.26960HepG2EIF4A3
PDZD8ENSG00000165650.71144.89260838.246900.449705.870504.73010HepG2EIF4G1
PDZD8ENSG00000165650.71466.91980802.998100.8692012.6258010.96950HepG2EIF4G2
PDZD8ENSG00000165650.71261.75180898.931100.489004.649403.27140HepG2ESF1
PDZD8ENSG00000165650.7581.839601047.58320-0.848404.053603.13630HepG2FIP1L1
PDZD8ENSG00000165650.7402.87960802.28990-0.993808.732306.87120HepG2FUS
PDZD8ENSG00000165650.7704.792701169.66590-0.730807.816006.69950HepG2FXR1
PDZD8ENSG00000165650.71812.371001151.897600.653807.531406.04990HepG2G3BP2
PDZD8ENSG00000165650.7865.09680678.704000.350002.390201.44800HepG2GNB2L1
PDZD8ENSG00000165650.71726.15470891.663400.9529012.8278011.54610HepG2GPKOW
PDZD8ENSG00000165650.7428.95990714.82820-0.736804.891103.41700HepG2GRSF1
PDZD8ENSG00000165650.71030.24240780.588100.400302.701401.73370HepG2HDGF
PDZD8ENSG00000165650.7398.55260638.77010-0.680505.938204.95010HepG2HNRNPC
PDZD8ENSG00000165650.7851.910701098.65540-0.367002.574701.89950HepG2HNRNPK
PDZD8ENSG00000165650.7568.17530774.06020-0.446105.558204.63210HepG2HNRNPL
PDZD8ENSG00000165650.71392.89550850.932800.710908.190907.17100HepG2HNRNPLL
PDZD8ENSG00000165650.71070.09770779.661700.456704.949904.00680HepG2IGF2BP1
PDZD8ENSG00000165650.71644.399801102.960100.576105.723904.78690HepG2IGF2BP2
PDZD8ENSG00000165650.71867.294701170.074000.674207.540506.47270HepG2MAGOH
PDZD8ENSG00000165650.71255.95330754.530800.735008.983507.69400HepG2NSUN2
PDZD8ENSG00000165650.7742.69920565.970200.392003.505102.68510HepG2PPIL4
PDZD8ENSG00000165650.71232.32450795.835900.6307011.115909.71370HepG2PRPF4
PDZD8ENSG00000165650.7314.12670488.08850-0.635803.856302.92210HepG2PRPF8
PDZD8ENSG00000165650.71194.60650804.301400.570606.300505.44940HepG2PUF60
PDZD8ENSG00000165650.7705.60640853.77770-0.275002.806202.21010HepG2PUM1
PDZD8ENSG00000165650.71293.45570853.168800.600208.082106.96120HepG2PUM2
PDZD8ENSG00000165650.71407.992201152.719400.288502.899602.34830HepG2NELFE
PDZD8ENSG00000165650.71480.26010852.858600.795406.427005.44790HepG2RPLP0
PDZD8ENSG00000165650.71246.16540719.917800.791506.048504.68490HepG2RPS10
PDZD8ENSG00000165650.7706.67120482.828100.549403.725502.83070HepG2RRP9
PDZD8ENSG00000165650.7717.32850565.105600.344003.157802.47890HepG2SAFB2
PDZD8ENSG00000165650.71869.81040842.242501.1505023.3962021.57270HepG2SF3B1
PDZD8ENSG00000165650.7956.59950771.150900.310803.142302.40220HepG2SLBP
PDZD8ENSG00000165650.7546.27940747.04450-0.451602.409901.52060HepG2SMNDC1
PDZD8ENSG00000165650.71405.65950937.147100.584803.609502.71270HepG2SNRNP70
PDZD8ENSG00000165650.71856.491101326.962100.484409.926709.13760HepG2SRFBP1
PDZD8ENSG00000165650.71556.944901125.600900.467907.395806.70890HepG2SRSF1
PDZD8ENSG00000165650.71354.59090906.292400.579704.408503.11620HepG2SRSF3
PDZD8ENSG00000165650.7977.43370794.102000.299602.645802.03050HepG2SRSF5
PDZD8ENSG00000165650.71752.70030915.718800.9365030.1293028.68440HepG2SRSF9
PDZD8ENSG00000165650.72536.361101152.131101.1384051.0692049.53970HepG2SSB
PDZD8ENSG00000165650.7442.20180700.12990-0.662902.934401.66520HepG2STAU1
PDZD8ENSG00000165650.71139.03660903.137100.334703.871103.15790HepG2SUCLG1
PDZD8ENSG00000165650.71335.45940979.829600.446602.799801.46280HepG2SUGP2
PDZD8ENSG00000165650.71065.44850629.781200.758407.347806.32990HepG2SUPV3L1
PDZD8ENSG00000165650.71723.800101011.677800.7687016.4628015.26020HepG2TAF15
PDZD8ENSG00000165650.71052.98640829.455000.344202.380501.70090HepG2TARDBP
PDZD8ENSG00000165650.7795.40680616.659600.367102.955602.44150HepG2TIAL1
PDZD8ENSG00000165650.7988.10430785.729600.330502.382801.57660HepG2TUFM
PDZD8ENSG00000165650.71621.12010896.396800.8547013.2574011.84440HepG2U2AF1
PDZD8ENSG00000165650.7261.06900372.04640-0.511102.613601.87670HepG2UCHL5
PDZD8ENSG00000165650.7703.956701166.83540-0.7290015.0943013.71540HepG2UPF1
PDZD8ENSG00000165650.7887.030201199.33660-0.435205.643904.19460HepG2UTP18
PDZD8ENSG00000165650.71069.433401283.29420-0.263003.177602.60450HepG2ZNF622
PDZD8ENSG00000165650.71031.23700732.220800.493902.995201.64270HepG2ZRANB2
PDZD8ENSG00000165650.71673.037201262.396600.406203.937902.49860K562AARS
PDZD8ENSG00000165650.71649.663602271.82930-0.461708.895507.95320K562AGGF1
PDZD8ENSG00000165650.71976.049202496.33990-0.337203.120202.06220K562AKAP8
PDZD8ENSG00000165650.71732.857802363.92730-0.448004.977304.09040K562AKAP8L
PDZD8ENSG00000165650.71070.518501666.26530-0.638307.397905.94470K562BOP1
PDZD8ENSG00000165650.72264.682502873.96960-0.343704.972703.45900K562CPEB4
PDZD8ENSG00000165650.75151.957804234.463000.282803.722402.58500K562CELF1
PDZD8ENSG00000165650.71824.571802665.47650-0.546806.696004.41230K562DDX19B
PDZD8ENSG00000165650.71192.090401521.37320-0.351903.279102.13470K562DDX3X
PDZD8ENSG00000165650.72597.521502974.15040-0.195302.225201.63070K562DDX47
PDZD8ENSG00000165650.71210.938301542.46400-0.349104.027402.35970K562DDX6
PDZD8ENSG00000165650.72009.074102543.84310-0.340504.750803.55190K562DKC1
PDZD8ENSG00000165650.7905.837401402.69470-0.630906.628905.16870K562EFTUD2
PDZD8ENSG00000165650.71482.298602065.67050-0.478805.397504.44190K562EIF2S2
PDZD8ENSG00000165650.71375.137901818.64480-0.403305.513804.40460K562EIF3G
PDZD8ENSG00000165650.74320.800403444.263400.327005.984704.62040K562EIF4G2
PDZD8ENSG00000165650.71317.551602284.78440-0.7942013.2979011.28110K562FIP1L1
PDZD8ENSG00000165650.71141.186401802.73430-0.659708.515806.97380K562FMR1
PDZD8ENSG00000165650.7948.620001528.02860-0.687807.745106.13610K562FTO
PDZD8ENSG00000165650.71186.731501607.78480-0.438105.761203.72920K562FUS
PDZD8ENSG00000165650.72195.661501536.594800.514803.772802.91800K562G3BP2
PDZD8ENSG00000165650.71249.149501691.45320-0.437304.455903.45460K562GPKOW
PDZD8ENSG00000165650.71149.178802752.96690-1.2604018.6824016.64690K562GRSF1
PDZD8ENSG00000165650.71374.303801746.50910-0.345803.468602.26120K562HNRNPA1
PDZD8ENSG00000165650.7565.556701381.52010-1.2885028.7621026.92180K562HNRNPC
PDZD8ENSG00000165650.7689.544901233.60910-0.8392012.8266010.36440K562HNRNPF
PDZD8ENSG00000165650.71474.100001879.19440-0.350302.413101.54740K562HNRNPM
PDZD8ENSG00000165650.72201.679803097.78560-0.492605.882604.73660K562HSPD1
PDZD8ENSG00000165650.7903.573401444.41150-0.676805.601604.21230K562KRR1
PDZD8ENSG00000165650.71945.392902401.46730-0.303903.207802.02580K562MAK16
PDZD8ENSG00000165650.71604.249302306.68720-0.523907.339905.74620K562MATR3
PDZD8ENSG00000165650.71304.052301651.06660-0.340402.970002.06080K562METAP2
PDZD8ENSG00000165650.72233.969103671.32610-0.7167011.431609.26970K562MSI2
PDZD8ENSG00000165650.71389.229802096.79220-0.5939014.3900012.71850K562MTPAP
PDZD8ENSG00000165650.71119.761101587.17500-0.503306.597104.73380K562NCBP2
PDZD8ENSG00000165650.71829.828902329.81330-0.348507.759906.59740K562NSUN2
PDZD8ENSG00000165650.7966.292101360.10010-0.493204.587102.55050K562NUSAP1
PDZD8ENSG00000165650.71843.508902259.38060-0.293502.844301.47530K562PCBP1
PDZD8ENSG00000165650.71425.278401845.04150-0.372402.742001.91460K562PCBP3
PDZD8ENSG00000165650.7956.171001348.72320-0.496304.201702.38580K562PHF6
PDZD8ENSG00000165650.71098.585501415.21530-0.365403.483302.57790K562POLR2G
PDZD8ENSG00000165650.71543.988202593.57640-0.7483011.775709.73350K562PPIG
PDZD8ENSG00000165650.7947.798001364.98010-0.526204.848303.85770K562PRPF8
PDZD8ENSG00000165650.7818.159601238.65240-0.598306.939105.39140K562PSIP1
PDZD8ENSG00000165650.71762.860102245.65290-0.349203.738902.97790K562PTBP1
PDZD8ENSG00000165650.72854.866003916.52620-0.456208.374706.67770K562PUM2
PDZD8ENSG00000165650.71727.641202344.46780-0.440504.249903.59900K562PUS1
PDZD8ENSG00000165650.7937.216501390.48050-0.569104.646203.58620K562RPS19
PDZD8ENSG00000165650.71286.344602298.79900-0.8376023.6763021.52370K562SF3A3
PDZD8ENSG00000165650.71193.938901608.80070-0.430303.174302.13040K562SF3B1
PDZD8ENSG00000165650.71268.037301986.34050-0.647502.739501.45040K562SFPQ
PDZD8ENSG00000165650.72793.101502355.157300.245903.845702.76100K562SRPK2
PDZD8ENSG00000165650.71657.843702201.49160-0.409204.761103.83800K562SRSF1
PDZD8ENSG00000165650.71577.279302079.15060-0.398603.785102.51990K562SRSF5
PDZD8ENSG00000165650.71516.143901875.93170-0.307203.775902.24850K562SSB
PDZD8ENSG00000165650.71551.882902742.02770-0.8212012.137009.51920K562STAU1
PDZD8ENSG00000165650.72495.872703278.94330-0.393705.113603.14000K562SUCLG1
PDZD8ENSG00000165650.72096.217701419.490100.562308.982807.49540K562SYNCRIP
PDZD8ENSG00000165650.71494.192102228.04650-0.576406.769805.62130K562TARDBP
PDZD8ENSG00000165650.7814.037101191.39110-0.549504.749103.49740K562TIAL1
PDZD8ENSG00000165650.71775.537402243.35370-0.337404.678203.02190K562TROVE2
PDZD8ENSG00000165650.7866.999901398.84080-0.690107.709305.94290K562UCHL5
PDZD8ENSG00000165650.71589.442002470.34340-0.6362016.8157015.21420K562UPF1
PDZD8ENSG00000165650.71615.964402376.94430-0.556702.946901.59890K562UTP18
PDZD8ENSG00000165650.71461.177002113.80630-0.532707.458605.97970K562WDR3
PDZD8ENSG00000165650.71877.897502198.03440-0.227103.049402.16110K562WDR43
PDZD8ENSG00000165650.72406.323202973.82320-0.305503.018101.66690K562WRN
PDZD8ENSG00000165650.72155.726102827.84820-0.391504.195103.09430K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDZD8 is not available on ENCORE database.





2 RBPs can affect the splicing of PDZD8 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPDZD8ENSG00000165650.7chr10-119100490119100613119078382119078485119133866119134978-0.104000.000360.00518excludedK562AQR
SEPDZD8ENSG00000165650.7chr10-119100490119100613119078382119078485119133866119134978-0.093000.000490.00932excludedK562PUS1
A3SSPDZD8ENSG00000165650.7chr10-1190496961190499321190496961190498591190783821190785480.081000.000000.00001longerK562AQR
A3SSPDZD8ENSG00000165650.7chr10-1191004901191006841191004901191006131191338661191349780.105000.000000.00000longerK562AQR
MXEPDZD8ENSG00000165650.7chr10-1190783821190784851191004901191006341190496961190498591191338661191349780.051000.003620.027471includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PDZD8 is not avaliable on ENCORE database.