TMEM39A

General Information

Gene Name       : TMEM39A
Gene ID             : ENSG00000176142.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM39A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM39AENSG00000176142.1213.7213.4713.60ENCSR000AEF
HepG2TMEM39AENSG00000176142.1236.3631.5733.97ENCSR985KAT
K562TMEM39AENSG00000176142.129.818.088.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM39A is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM39A RNA is bound by 31 proteins.  







eCLIP assay for TMEM39A is not avaliable on ENCORE database.





31 proteins are bound to TMEM39A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3119150668119150717-3'-UTR,intron-Distal3.366306.26843HepG2FUBP3
chr3119155788119155881-3'-UTR,CDS,intron-Distal,intron-Proximal4.219397.33504K562SF3B4
chr3119156609119156627-3'-UTR,CDS,intron-Distal5.241444.02817HepG2PRPF8
chr3119153672119153780-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.047458.59716K562BUD13
chr3119155804119155867-3'-UTR,CDS,intron-Distal,intron-Proximal3.859424.89564K562GPKOW
chr3119171284119171361-3'-UTR,CDS,intron-Distal,intron-Proximal3.120225.97777HepG2PPIG
chr3119155800119155875-3'-UTR,CDS,intron-Distal,intron-Proximal4.5079710.30697K562AQR
chr3119153666119153727-3'-UTR,5'-UTR,CDS,intron-Distal4.829885.91381K562LIN28B
chr3119171273119171340-3'-UTR,CDS,intron-Distal,intron-Proximal3.628196.04280HepG2PRPF8
chr3119155594119155663-3'-UTR,CDS,intron-Distal,intron-Proximal3.610567.85990HepG2PRPF8
chr3119156716119156799-3'-UTR,CDS,intron-Distal,intron-Proximal3.563444.68928K562RBM15
chr3119153508119153624-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.330627.05160K562PRPF8
chr3119153688119153805-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.309226.16419K562SMNDC1
chr3119153561119153626-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.682566.34676HepG2PRPF8
chr3119153673119153766-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.424827.87808HepG2BUD13
chr3119156556119156609-3'-UTR,CDS,intron-Distal,intron-Proximal5.148067.13970HepG2PRPF8
chr3119155779119155874-3'-UTR,CDS,intron-Distal,intron-Proximal3.9318414.48676HepG2BUD13
chr3119156619119156677-3'-UTR,CDS,intron-Distal3.881683.15006K562RBM15
chr3119165832119165906-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.824605.17013K562RBM15
chr3119150949119151055-3'-UTR,CDS,intron-Distal3.864963.88509K562SND1
chr3119153632119153729-3'-UTR,5'-UTR,CDS,intron-Distal4.1281311.64611HepG2LIN28B
chr3119155792119155844-3'-UTR,CDS,intron-Distal,intron-Proximal3.193449.99247HepG2U2AF2
chr3119155787119155870-3'-UTR,CDS,intron-Distal,intron-Proximal3.473016.76881K562BUD13
chr3119153687119153781-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.162139.04180K562SF3B4
chr3119180881119180971-5'-UTR,CDS,intron-Distal,intron-Proximal4.2565511.11007HepG2DDX3X
chr3119182337119182399-5'-UTR,intron-Distal,intron-Proximal4.9652513.83562HepG2DDX3X
chr3119182183119182231-5'-UTR,intron-Distal3.9803416.72391HepG2DDX3X
chr3119176979119177046-5'-UTR,CDS,intron-Distal,intron-Proximal4.634716.05264HepG2DDX3X
chr3119182265119182328-5'-UTR,intron-Distal,intron-Proximal5.036356.89039K562RBM15
chr3119170112119170192-5'-UTR,CDS,intron-Distal,intron-Proximal3.899898.26514HepG2U2AF2
chr3119182269119182330-5'-UTR,intron-Distal,intron-Proximal3.775873.00996K562BUD13
chr3119180963119180997-5'-UTR,intron-Distal,intron-Proximal4.042723.56076K562BUD13
chr3119180807119180926-5'-UTR,CDS,intron-Distal,intron-Proximal3.583134.39088K562SRSF1
chr3119182280119182334-5'-UTR,intron-Distal,intron-Proximal4.276187.30480HepG2DDX3X
chr3119182231119182280-5'-UTR,intron-Distal4.327078.43072HepG2DDX3X
chr3119182184119182233-5'-UTR,intron-Distal4.144083.81597K562RBM15
chr3119180812119180858-CDS,intron-Distal,intron-Proximal3.070914.68262K562RBM15
chr3119180692119180815-CDS,intron-Distal,intron-Proximal3.779656.11601HepG2KHSRP
chr3119180043119180147-intron-Distal4.212058.12131K562MATR3
chr3119178455119178520-intron-Distal4.080616.29995HepG2HNRNPM
chr3119168848119168899-intron-Distal4.323893.77802HepG2U2AF2
chr3119156454119156528-intron-Distal,intron-Proximal3.9598312.38875K562U2AF2
chr3119156593119156601-intron-Distal,intron-Proximal4.429357.15298K562AQR
chr3119154042119154130-intron-Distal3.8045210.58235HepG2U2AF2
chr3119164848119164925-intron-Distal3.759314.57207HepG2KHSRP
chr3119162795119162849-intron-Distal4.330325.18111K562CSTF2T
chr3119156457119156515-intron-Distal,intron-Proximal4.3691911.10589HepG2U2AF1
chr3119156524119156593-intron-Distal,intron-Proximal3.954555.85201K562PRPF8
chr3119177995119178077-intron-Distal4.169403.83762K562HNRNPA1
chr3119155859119155967-intron-Distal,intron-Proximal4.435135.22198HepG2RBM5
chr3119180499119180520-intron-Distal5.408845.52568K562GPKOW
chr3119169605119169678-intron-Distal3.233705.97391HepG2HNRNPC
chr3119180503119180569-intron-Distal4.033054.11564K562U2AF2
chr3119156558119156593-intron-Distal,intron-Proximal3.9535310.52556K562AQR
chr3119157307119157403-intron-Distal3.741734.51074HepG2HNRNPL
chr3119179525119179618-intron-Distal3.187606.39847K562QKI
chr3119179541119179600-intron-Distal3.050283.78707HepG2QKI
chr3119156521119156583-intron-Distal,intron-Proximal4.330295.32062K562EFTUD2
chr3119156953119156997-intron-Distal,intron-Proximal4.930434.90235K562SF3B4
chr3119164775119164866-intron-Distal3.591623.23171K562FUS
chr3119153563119153599-intron-Distal,intron-Proximal4.181375.47926K562AQR
chr3119156459119156529-intron-Distal,intron-Proximal3.006217.26020K562BUD13
chr3119180520119180591-intron-Distal5.863757.91544K562GPKOW
chr3119180496119180588-intron-Distal4.524096.60685K562BUD13
chr3119155092119155151-intron-Distal3.379594.30137HepG2PTBP1
chr3119178988119179056-intron-Distal3.484745.11767HepG2QKI
chr3119163984119164070-intron-Distal4.346533.96304K562CSTF2T
chr3119156454119156523-intron-Distal,intron-Proximal5.7221835.98919HepG2U2AF2
chr3119154191119154291-intron-Distal6.1484018.07529K562TARDBP
chr3119153599119153609-intron-Distal,intron-Proximal3.538673.04871K562AQR
chr3119156471119156528-intron-Distal,intron-Proximal4.006667.79506K562AQR
chr3119180418119180480-intron-Distal4.387633.54514K562TIA1
chr3119180664119180718-intron-Distal,intron-Proximal3.337873.47285K562PRPF8
chr3119156463119156574-intron-Distal,intron-Proximal3.624719.56000K562SF3B4
chr3119156470119156570-intron-Distal,intron-Proximal3.720188.81681HepG2EFTUD2
chr3119153526119153588-intron-Distal,intron-Proximal4.651526.30839HepG2TIAL1
chr3119178995119179078-intron-Distal5.719107.47823K562QKI
chr3119180507119180573-intron-Distal4.461968.98750HepG2U2AF2
chr3119164763119164848-intron-Distal5.4572711.43799HepG2KHSRP
chr3119156475119156587-intron-Distal,intron-Proximal3.845033.35109HepG2TIAL1
chr3119178540119178610-intron-Distal3.935865.63625HepG2HNRNPM
chr3119156452119156514-intron-Distal,intron-Proximal3.301633.93988K562U2AF1
chr3119164828119164932-intron-Distal4.414616.62503K562KHSRP
chr3119156963119157089-intron-Distal,intron-Proximal3.701263.90146K562KHSRP
chr3119156537119156597-intron-Distal,intron-Proximal4.323885.44803K562GPKOW
chr3119180675119180788-intron-Distal,intron-Proximal5.126366.55845K562RBM22
chr3119178181119178276-intron-Distal5.343327.41017K562PTBP1
chr3119156463119156521-intron-Distal,intron-Proximal3.647133.69252K562EFTUD2
chr3119180734119180776-intron-Distal,intron-Proximal4.024574.19412K562EFTUD2
chr3119180718119180787-intron-Distal,intron-Proximal4.704434.85612K562PRPF8
chr3119159097119159201-intron-Distal4.363553.16986HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM39A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM39A is not available on ENCORE database.

  • 117 RBPs can affect the levels of TMEM39A.  








The Knockdown/knockout RNA-Seq assay for TMEM39A is not available on ENCORE database.





117 RBPs can affect the gene expression of TMEM39A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM39AENSG00000176142.81082.094201522.81220-0.492904.296303.14150HepG2ABCF1
TMEM39AENSG00000176142.8629.951701143.90290-0.8607011.2310010.18100HepG2ACO1
TMEM39AENSG00000176142.8727.554501077.94600-0.567205.332104.01200HepG2ADAR
TMEM39AENSG00000176142.8641.243001637.23440-1.3523021.4115020.07930HepG2AKAP1
TMEM39AENSG00000176142.8799.169401235.49930-0.628505.783304.30540HepG2AKAP8
TMEM39AENSG00000176142.8600.199601149.08590-0.9370013.7325012.20210HepG2AKAP8L
TMEM39AENSG00000176142.8967.210601354.67380-0.486004.001203.06330HepG2ASCC1
TMEM39AENSG00000176142.81280.599301542.45410-0.268402.877302.17960HepG2AUH
TMEM39AENSG00000176142.8695.975001019.84080-0.551205.066404.28710HepG2BOP1
TMEM39AENSG00000176142.8956.702201287.03340-0.427903.279902.44220HepG2CIRBP
TMEM39AENSG00000176142.8671.614101143.42420-0.767708.854507.79510HepG2CKAP4
TMEM39AENSG00000176142.81136.357501401.51420-0.302603.261602.57510HepG2CELF1
TMEM39AENSG00000176142.8727.455901057.84050-0.540205.355904.24690HepG2DDX19B
TMEM39AENSG00000176142.8541.24180884.46870-0.708505.500703.75100HepG2DDX27
TMEM39AENSG00000176142.81202.027901568.34620-0.383802.698502.07940HepG2DDX3X
TMEM39AENSG00000176142.8564.53090945.30360-0.743706.534305.40610HepG2DDX55
TMEM39AENSG00000176142.81011.888001315.56980-0.378602.986701.94130HepG2DDX5
TMEM39AENSG00000176142.81003.454001347.24300-0.425002.791202.17090HepG2DDX6
TMEM39AENSG00000176142.8830.783401094.34560-0.397503.625702.86880HepG2DKC1
TMEM39AENSG00000176142.8869.910601085.42890-0.319303.021302.29170HepG2DNAJC21
TMEM39AENSG00000176142.8901.101501075.86830-0.255702.687302.04320HepG2DNAJC2
TMEM39AENSG00000176142.8666.580501098.60850-0.720807.541406.09930HepG2EEF2
TMEM39AENSG00000176142.8631.53880915.85200-0.536204.462503.04800HepG2EFTUD2
TMEM39AENSG00000176142.8978.653001295.13620-0.404202.868902.26550HepG2EIF2S1
TMEM39AENSG00000176142.8919.179101155.04310-0.329502.822801.64100HepG2EIF2S2
TMEM39AENSG00000176142.8481.67530891.82380-0.888709.412907.84280HepG2EIF3D
TMEM39AENSG00000176142.8987.905001431.27720-0.534904.139303.36200HepG2EIF4A3
TMEM39AENSG00000176142.81240.967201486.72670-0.260702.837801.99280HepG2EIF4G1
TMEM39AENSG00000176142.81943.929101424.197100.448704.310703.30910HepG2EIF4G2
TMEM39AENSG00000176142.81021.295401319.02130-0.369102.993901.86280HepG2ESF1
TMEM39AENSG00000176142.81338.087101770.96840-0.404406.365805.51600HepG2ETF1
TMEM39AENSG00000176142.8748.005801117.59330-0.579306.742105.44300HepG2EWSR1
TMEM39AENSG00000176142.8597.28660834.01930-0.481703.499501.55120HepG2EXOSC9
TMEM39AENSG00000176142.8571.10830797.07200-0.480904.605603.06500HepG2FAM120A
TMEM39AENSG00000176142.8647.39950888.34860-0.456503.965202.63160HepG2FASTKD2
TMEM39AENSG00000176142.8974.873901537.63570-0.657406.245005.13450HepG2FIP1L1
TMEM39AENSG00000176142.8825.548901120.53260-0.440802.408801.36260HepG2FUS
TMEM39AENSG00000176142.81111.953701444.10040-0.377102.678701.99800HepG2FXR1
TMEM39AENSG00000176142.8684.134201339.61400-0.9695012.4978011.13850HepG2G3BP1
TMEM39AENSG00000176142.8819.038501422.17310-0.796109.909808.22840HepG2G3BP2
TMEM39AENSG00000176142.8570.65950794.05340-0.476603.393602.38870HepG2GEMIN5
TMEM39AENSG00000176142.8669.145801061.43710-0.665604.293803.50800HepG2GPKOW
TMEM39AENSG00000176142.8697.71040977.72920-0.486802.647201.56100HepG2GRSF1
TMEM39AENSG00000176142.8863.237501095.82790-0.344202.695602.05680HepG2HNRNPA1
TMEM39AENSG00000176142.8647.733001218.91390-0.9121013.6259012.19780HepG2HNRNPC
TMEM39AENSG00000176142.8732.047401012.94240-0.468503.290502.61020HepG2HNRNPLL
TMEM39AENSG00000176142.8853.354401060.79420-0.313902.482801.57890HepG2HNRNPM
TMEM39AENSG00000176142.8698.847501210.85460-0.7930017.6931016.26510HepG2HNRNPU
TMEM39AENSG00000176142.8901.513701361.68800-0.595005.605004.67560HepG2IGF2BP2
TMEM39AENSG00000176142.8738.171101277.88670-0.791703.039102.00720HepG2IGF2BP3
TMEM39AENSG00000176142.81022.441901236.84650-0.274603.275802.48390HepG2ILF2
TMEM39AENSG00000176142.8745.129201006.36680-0.433602.576401.43650HepG2KHDRBS1
TMEM39AENSG00000176142.8880.299201369.62610-0.637704.951303.57360HepG2KHSRP
TMEM39AENSG00000176142.8635.22930854.82800-0.428403.259802.02920HepG2LARP7
TMEM39AENSG00000176142.81073.281401444.60460-0.428603.274402.56100HepG2MAGOH
TMEM39AENSG00000176142.8497.01990723.89940-0.542504.146902.21340HepG2MARK2
TMEM39AENSG00000176142.8656.861801452.68960-1.1451016.1342014.70420HepG2MATR3
TMEM39AENSG00000176142.8508.22840933.37300-0.877006.525104.96690HepG2METAP2
TMEM39AENSG00000176142.8826.221901044.87580-0.338702.713001.50690HepG2NAA15
TMEM39AENSG00000176142.8973.557101486.90830-0.611005.795204.89410HepG2NCBP2
TMEM39AENSG00000176142.8579.98500772.94480-0.414302.905601.45240HepG2NIP7
TMEM39AENSG00000176142.8996.583201494.35900-0.584509.171607.81110HepG2NOL12
TMEM39AENSG00000176142.8428.42710737.51630-0.7836010.108907.94810HepG2PKM
TMEM39AENSG00000176142.8817.895401079.98410-0.401004.422803.51090HepG2PPIL4
TMEM39AENSG00000176142.8439.42640729.18210-0.730706.342805.17330HepG2PRPF8
TMEM39AENSG00000176142.8949.623301379.20680-0.538408.888408.02100HepG2PTBP1
TMEM39AENSG00000176142.8988.600301426.48190-0.529006.130405.28940HepG2PUF60
TMEM39AENSG00000176142.8949.786701514.25660-0.6729017.6562016.42540HepG2PUM1
TMEM39AENSG00000176142.8834.622201165.10570-0.481304.584903.83010HepG2PUS1
TMEM39AENSG00000176142.81071.594901493.82290-0.479206.448005.55090HepG2QKI
TMEM39AENSG00000176142.8590.532101023.81920-0.793904.713403.80700HepG2RAVER1
TMEM39AENSG00000176142.81093.319101512.72020-0.468405.632604.46240HepG2RBM15
TMEM39AENSG00000176142.8683.485301480.19670-1.1148029.5350028.20190HepG2RBM22
TMEM39AENSG00000176142.8610.85560837.03630-0.454502.743101.68740HepG2RCC2
TMEM39AENSG00000176142.8833.762801534.96680-0.8805022.1567020.91160HepG2NELFE
TMEM39AENSG00000176142.81046.917701429.53670-0.449406.906005.99620HepG2RECQL
TMEM39AENSG00000176142.8670.083801107.00100-0.724209.210508.08090HepG2RPLP0
TMEM39AENSG00000176142.8394.62390867.78870-1.1369018.8893017.49570HepG2RPS19
TMEM39AENSG00000176142.8452.13010721.30780-0.673905.075304.04440HepG2RRP9
TMEM39AENSG00000176142.8654.65610870.95340-0.411902.812501.86530HepG2SERBP1
TMEM39AENSG00000176142.81250.564201002.654800.318702.258601.61860HepG2SF3B1
TMEM39AENSG00000176142.8982.011901436.02310-0.548309.567108.56690HepG2SF3B4
TMEM39AENSG00000176142.8712.105601257.48940-0.8204021.9695020.42830HepG2SMN1
TMEM39AENSG00000176142.8931.200001671.81870-0.8443024.3273023.22480HepG2SRFBP1
TMEM39AENSG00000176142.81256.813201498.86010-0.254102.913802.43230HepG2SRSF1
TMEM39AENSG00000176142.8689.311801078.74080-0.646104.930903.56170HepG2SRSF3
TMEM39AENSG00000176142.8901.144301408.42280-0.6443012.8631011.64560HepG2SRSF5
TMEM39AENSG00000176142.8870.833501219.37060-0.485707.893707.04600HepG2SRSF9
TMEM39AENSG00000176142.8504.28380922.54120-0.871408.109906.12180HepG2STIP1
TMEM39AENSG00000176142.81038.932301601.78210-0.6246015.1542013.88950HepG2SUCLG1
TMEM39AENSG00000176142.8489.11780941.02260-0.944009.871208.72490HepG2SUPV3L1
TMEM39AENSG00000176142.8901.974901347.13110-0.578709.330608.39780HepG2TAF15
TMEM39AENSG00000176142.8419.21730630.72680-0.589303.974502.80600HepG2TFIP11
TMEM39AENSG00000176142.8733.410201176.54140-0.6819010.172109.31820HepG2TIAL1
TMEM39AENSG00000176142.8915.555401187.09110-0.374704.687803.99280HepG2TRIM56
TMEM39AENSG00000176142.8887.970301315.24930-0.566805.809704.91660HepG2U2AF1
TMEM39AENSG00000176142.81007.321501475.06920-0.550304.497203.41250HepG2UBE2L3
TMEM39AENSG00000176142.8382.77460555.88250-0.538303.649602.77970HepG2UCHL5
TMEM39AENSG00000176142.81188.363301404.98960-0.241602.556201.88070HepG2UPF1
TMEM39AENSG00000176142.81087.105101444.13110-0.409705.548704.11030HepG2UTP18
TMEM39AENSG00000176142.8824.783901356.46190-0.7178015.1292013.89650HepG2UTP3
TMEM39AENSG00000176142.8689.88070949.92940-0.461502.602701.54650HepG2XPO5
TMEM39AENSG00000176142.8642.03050926.33390-0.528904.077403.20520HepG2XRN2
TMEM39AENSG00000176142.8691.676401017.29190-0.556609.209208.10300HepG2ZC3H8
TMEM39AENSG00000176142.8684.551501022.65060-0.579103.946402.37050HepG2ZRANB2
TMEM39AENSG00000176142.8814.908701084.83920-0.412803.772502.29370K562APOBEC3C
TMEM39AENSG00000176142.81534.15630987.804300.635007.703906.80570K562AQR
TMEM39AENSG00000176142.8840.64910628.217200.420102.800601.92200K562BOP1
TMEM39AENSG00000176142.8843.290901010.67910-0.261202.275701.67580K562DDX47
TMEM39AENSG00000176142.8432.10070564.38910-0.385302.606701.83250K562EIF3G
TMEM39AENSG00000176142.8992.66900800.918700.309602.075901.36060K562EIF4A3
TMEM39AENSG00000176142.8997.245001229.51220-0.302103.240202.22600K562EIF4G2
TMEM39AENSG00000176142.8448.32850832.91840-0.8936015.1407013.83750K562FXR1
TMEM39AENSG00000176142.81146.05620868.325700.400302.225301.60140K562G3BP2
TMEM39AENSG00000176142.8871.42450637.739600.450303.590902.69070K562GPKOW
TMEM39AENSG00000176142.8506.20770663.25630-0.389802.591602.01130K562HNRNPC
TMEM39AENSG00000176142.81251.10110871.336700.521804.951203.89600K562HSPD1
TMEM39AENSG00000176142.8620.67770958.27550-0.626605.328502.72680K562KHSRP
TMEM39AENSG00000176142.8750.97410996.05920-0.407503.537502.58120K562MAGOH
TMEM39AENSG00000176142.8668.83200886.24190-0.406102.527001.59360K562PCBP2
TMEM39AENSG00000176142.8396.50210530.31670-0.419502.977602.14570K562POLR2G
TMEM39AENSG00000176142.8459.88090967.73550-1.0734017.4083015.81010K562PTBP1
TMEM39AENSG00000176142.81200.636601397.99610-0.219602.194101.33740K562PUM2
TMEM39AENSG00000176142.81032.54630713.554000.533003.585501.74900K562RBM17
TMEM39AENSG00000176142.8594.77420927.93050-0.641706.886105.48910K562RBM22
TMEM39AENSG00000176142.8515.21820976.50130-0.9224012.161209.87080K562NELFE
TMEM39AENSG00000176142.8669.04990914.93000-0.451503.025601.97260K562RPS3
TMEM39AENSG00000176142.81520.93610779.053200.965103.298501.95300K562SF1
TMEM39AENSG00000176142.8679.71310830.98010-0.289902.344301.47340K562SRPK2
TMEM39AENSG00000176142.81214.46100871.461300.478707.318106.21530K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM39A is not available on ENCORE database.





15 RBPs can affect the splicing of TMEM39A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM39AENSG00000176142.8chr3-1191546011191547821191536081191537291191556371191556630.111000.002830.04822includedK562SRSF1
SETMEM39AENSG00000176142.8chr3-1191546011191547821191536081191537291191556371191556630.111000.000720.04673includedHepG2RBM22
SETMEM39AENSG00000176142.8chr3-119176864119177087119171293119171377119180808119180995-0.063000.000120.00611excludedK562AKAP8L
SETMEM39AENSG00000176142.8chr3-1191546011191547821191536081191537291191556371191556630.067000.001540.09958includedHepG2TBRG4
SETMEM39AENSG00000176142.8chr3-119171293119171377119165865119166019119176864119177087-0.061000.010240.09304excludedHepG2U2AF2
SETMEM39AENSG00000176142.8chr3-1191546011191547821191536081191537291191556371191556630.099000.000030.02648includedHepG2SUGP2
SETMEM39AENSG00000176142.8chr3-119154601119154782119148346119151061119155637119155862-0.139000.007960.06773excludedK562AQR
SETMEM39AENSG00000176142.8chr3-119165864119166019119156601119156950119176864119177087-0.170000.000010.00017excludedK562AQR
SETMEM39AENSG00000176142.8chr3-1191564341191564961191556371191558251191566011191569500.053000.000400.06410includedHepG2TIA1
SETMEM39AENSG00000176142.8chr3-119176864119177087119171293119171377119180808119180995-0.077000.000050.00127excludedK562PUS1
SETMEM39AENSG00000176142.8chr3-1191564341191564961191556371191558251191566011191569500.099000.000080.01027includedHepG2IGF2BP3
SETMEM39AENSG00000176142.8chr3-119176864119177031119171293119171377119180808119180995-0.063000.002530.06760excludedK562UTP18
SETMEM39AENSG00000176142.8chr3-119176864119177087119171293119171377119180808119180995-0.077000.000050.00237excludedK562RBM15
SETMEM39AENSG00000176142.8chr3-1191564341191564961191556371191558251191566011191569500.099000.000090.05063includedHepG2SMNDC1
SETMEM39AENSG00000176142.8chr3-1191564341191564961191556371191558251191566011191569500.190000.000000.00015includedK562NCBP2
A3SSTMEM39AENSG00000176142.8chr3-1191712931191713961191712931191713771191768641191771000.208000.000000.00000longerK562AQR
A3SSTMEM39AENSG00000176142.8chr3-1191768641191771001191768641191770871191808081191809950.087000.001930.01244longerK562AQR
MXETMEM39AENSG00000176142.8chr3-119171293119171377119176864119177087119165864119166019119180808119180995-0.197000.000060.003892includedK562RBM15
MXETMEM39AENSG00000176142.8chr3-119171293119171346119176864119177087119165864119166019119180808119180995-0.174000.005780.077252includedK562PUS1
MXETMEM39AENSG00000176142.8chr3-1191712931191713771191768641191771001191658641191660191191808081191809950.104000.000230.002561includedK562AQR
MXETMEM39AENSG00000176142.8chr3-1191712931191713771191768641191770311191658651191660191191808081191809950.070000.008590.055951includedK562AQR
MXETMEM39AENSG00000176142.8chr3-1191712931191713961191768641191771001191658651191660191191808081191809950.108000.000340.003571includedK562AQR
MXETMEM39AENSG00000176142.8chr3-1191712931191713961191768641191770311191658651191660191191808081191809950.072000.011290.069821includedK562AQR
MXETMEM39AENSG00000176142.8chr3-1191768641191770311191805141191805431191712931191713771191808081191809950.125000.000640.006171includedK562AQR
MXETMEM39AENSG00000176142.8chr3-1191712931191713771191768641191770311191658651191660191191808081191809950.139000.006710.039021includedHepG2U2AF2
MXETMEM39AENSG00000176142.8chr3-1191712931191713771191768641191770871191658641191660191191808081191809950.426000.000040.000501includedHepG2U2AF2
MXETMEM39AENSG00000176142.8chr3-1191712931191713771191768641191770871191658641191660191191808081191809950.325000.000040.003451includedHepG2RBFOX2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM39A is not avaliable on ENCORE database.