CSNK2B

General Information

Gene Name       : CSNK2B
Gene ID             : ENSG00000204435.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CSNK2B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CSNK2BENSG00000204435.13234.04258.76246.40ENCSR000AEF
HepG2CSNK2BENSG00000204435.13333.70280.18306.94ENCSR985KAT
K562CSNK2BENSG00000204435.13735.47757.67746.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CSNK2B is not avaliable on ENCORE database.



Proteins bound to RNA
  • CSNK2B RNA is bound by 24 proteins.  







eCLIP assay for CSNK2B is not avaliable on ENCORE database.





24 proteins are bound to CSNK2B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr63163774731637762+3'-UTR,intron-Distal3.2401920.95944K562TIA1
chr63163774131637759+3'-UTR,intron-Distal3.8585412.79542HepG2LARP4
chr63163776231637802+3'-UTR,intron-Distal3.5919522.60469K562TIA1
chr63163768531637749+3'-UTR,CDS,intron-Distal3.2650716.67285K562PCBP1
chr63163767131637744+3'-UTR,CDS,intron-Distal3.5542212.08083HepG2PCBP2
chr63163774231637758+3'-UTR,intron-Distal4.2000077.73280K562PABPC4
chr63163769431637742+3'-UTR,CDS,intron-Distal3.9779773.86736K562PABPC4
chr63163760931637760+3'-UTR,CDS,intron-Distal,intron-Proximal3.4176310.46928K562PUM1
chr63163776031637820+3'-UTR,intron-Distal5.078695.89618HepG2TIA1
chr63163775931637791+3'-UTR,intron-Distal3.6010810.68825HepG2LARP4
chr63163774531637760+3'-UTR,intron-Distal4.992345.89618HepG2TIA1
chr63163775831637787+3'-UTR,intron-Distal4.1332778.81225K562PABPC4
chr63163387931633955+5'-UTR,intron-Distal4.1458223.10944HepG2DDX3X
chr63163392531633944+5'-UTR,intron-Distal4.4947966.53951K562DDX3X
chr63163408531634136+5'-UTR,intron-Distal5.498108.03507K562AQR
chr63163394431633961+5'-UTR,intron-Distal4.2531970.25327K562DDX3X
chr63163459731634625+5'-UTR,CDS,intron-Proximal3.3952155.27939K562DDX3X
chr63163388131633925+5'-UTR,intron-Distal4.3105852.10151K562DDX3X
chr63163396331633986+5'-UTR,intron-Distal,intron-Proximal3.8159868.85269K562DDX3X
chr63163415631634165+5'-UTR,intron-Distal4.281204.22101K562PRPF8
chr63163392331633985+5'-UTR,intron-Distal3.234665.42346HepG2PCBP2
chr63163385631633946+5'-UTR,intron-Distal4.0692123.10253K562PCBP1
chr63163764331637654+CDS,intron-Distal3.9062254.00679K562YBX3
chr63163566731635720+CDS3.666467.46892K562APOBEC3C
chr63163716831637175+CDS,intron-Distal4.5584650.72182K562YBX3
chr63163715931637168+CDS,intron-Distal3.6579919.01644K562YBX3
chr63163707031637150+CDS,intron-Distal,intron-Proximal3.9511714.44887K562DDX24
chr63163757331637632+CDS,intron-Distal,intron-Proximal3.2816212.18336K562AQR
chr63163687331636891+CDS,intron-Proximal3.015033.17668K562METAP2
chr63163709131637169+CDS,intron-Distal,intron-Proximal4.482647.00964HepG2UCHL5
chr63163641931636428+CDS3.3332323.77137K562YBX3
chr63163703831637116+CDS,intron-Distal,intron-Proximal3.2216923.68470K562UCHL5
chr63163693131636989+CDS,intron-Proximal3.849397.26133HepG2PRPF8
chr63163727131637285+CDS,intron-Distal3.6731937.22204K562YBX3
chr63163634931636365+CDS3.6451940.65870K562YBX3
chr63163631431636378+CDS,intron-Proximal3.1058013.76231K562GRWD1
chr63163721131637221+CDS,intron-Distal3.4357125.71717K562YBX3
chr63163763831637643+CDS,intron-Distal4.1773861.94119K562YBX3
chr63163632731636338+CDS3.0674025.58931K562YBX3
chr63163639931636443+CDS,intron-Proximal3.4691215.75848HepG2GRWD1
chr63163687231636895+CDS,intron-Proximal3.1354413.61090K562UCHL5
chr63163637831636431+CDS4.0620013.48557K562GRWD1
chr63163467131634720+CDS,intron-Proximal4.4632310.54451HepG2AQR
chr63163560631635672+CDS,intron-Proximal4.5124813.99543HepG2AQR
chr63163641231636478+CDS,intron-Proximal3.6144710.90257HepG2PRPF8
chr63163634531636349+CDS3.6023031.21403K562YBX3
chr63163714431637159+CDS,intron-Distal3.2356923.10710K562YBX3
chr63163717531637211+CDS,intron-Distal4.1625166.24881K562YBX3
chr63163690731636959+CDS,intron-Proximal3.259998.58389K562DDX24
chr63163766231637669+CDS,intron-Distal4.1913540.59969K562YBX3
chr63163574131635747+CDS3.7916267.34725K562YBX3
chr63163631531636320+CDS,intron-Proximal3.0103030.05781K562YBX3
chr63163642831636431+CDS3.1677615.81839K562YBX3
chr63163466931634682+CDS,intron-Proximal3.623196.92683HepG2PPIG
chr63163564231635674+CDS,intron-Proximal3.036565.13416K562ZNF800
chr63163689831636972+CDS,intron-Proximal3.6437514.16806HepG2GRWD1
chr63163633831636342+CDS3.0740218.49858K562YBX3
chr63163639831636419+CDS3.2879439.94958K562YBX3
chr63163467431634683+CDS,intron-Proximal3.6424814.53880K562AQR
chr63163752831637625+CDS,intron-Distal,intron-Proximal3.961859.27577HepG2SF3B4
chr63163564331635673+CDS,intron-Proximal3.2871928.05248K562DDX3X
chr63163761831637638+CDS,intron-Distal3.9590859.24569K562YBX3
chr63163467331634680+CDS3.0907032.51478K562DDX3X
chr63163687331636887+CDS,intron-Proximal3.471097.68059K562GRWD1
chr63163687531636880+CDS3.5787115.67375K562YBX3
chr63163464231634681+CDS,intron-Proximal3.638225.54091HepG2LARP4
chr63163688031636887+CDS3.1287111.25096K562YBX3
chr63163564431635675+CDS,intron-Proximal3.511246.00978HepG2PPIG
chr63163634231636345+CDS4.0530321.49787K562YBX3
chr63163687331636875+CDS,intron-Proximal3.4792214.09233K562YBX3
chr63163765431637662+CDS,intron-Distal4.0738938.49352K562YBX3
chr63163565431635672+CDS3.253788.83294K562PABPC4
chr63163467031634680+CDS3.145239.02046K562PABPC4
chr63163572231635741+CDS3.6439273.12647K562YBX3
chr63163689531636982+CDS,intron-Proximal3.1676525.02137K562UCHL5
chr63163571031635716+CDS3.5868757.01185K562YBX3
chr63163567331635710+CDS4.01379400.00000K562YBX3
chr63163722131637257+CDS,intron-Distal3.7363243.71528K562YBX3
chr63163687431636901+CDS3.520968.56897K562DDX24
chr63163637331636399+CDS3.1391111.58951HepG2GRWD1
chr63163560831635655+CDS,intron-Proximal3.184095.56806HepG2PRPF8
chr63163562831635656+CDS,intron-Proximal4.6555721.92431K562AQR
chr63163704131637113+CDS,intron-Distal,intron-Proximal3.516127.46142HepG2SF3B4
chr63163463231634670+CDS3.4756961.62155K562DDX3X
chr63163637331636387+CDS3.1186633.90466K562YBX3
chr63163761231637618+CDS,intron-Distal,intron-Proximal3.4715729.88579K562YBX3
chr63163687331636891+CDS,intron-Proximal4.211864.42709HepG2G3BP1
chr63163725731637271+CDS,intron-Distal3.6258326.75203K562YBX3
chr63163465431634786+CDS,intron-Distal,intron-Proximal4.9457917.81618HepG2PRPF8
chr63163687531636902+CDS3.025204.20515K562ZNF800
chr63163580531635959+intron-Distal,intron-Proximal3.064776.46046K562KHSRP
chr63163475931634830+intron-Distal,intron-Proximal3.526696.71915K562PRPF8
chr63163398531634028+intron-Distal,intron-Proximal3.174685.36110K562AQR
chr63163586431635910+intron-Distal4.499144.64001HepG2U2AF2
chr63163468331634723+intron-Proximal5.6951119.39840K562AQR
chr63163698231637038+intron-Proximal3.8567916.74892K562UCHL5
chr63163703031637093+intron-Distal,intron-Proximal3.355746.67352HepG2PRPF8
chr63163698931637039+intron-Proximal3.816523.19850K562FUS
chr63163701631637096+intron-Distal,intron-Proximal3.157019.10902HepG2BUD13
chr63163468831634759+intron-Proximal5.7855311.02498K562PRPF8
chr63163561231635642+intron-Proximal4.401375.75388HepG2BUD13
chr63163730331637340+intron-Distal,intron-Proximal4.859975.33214K562PRPF8
chr63163577631635796+intron-Proximal3.860594.00320K562AQR
chr63163698931637030+intron-Proximal4.629787.17775K562GRWD1
chr63163700831637077+intron-Distal,intron-Proximal3.4556711.35034K562RBM15
chr63163698731637022+intron-Proximal3.555197.89598HepG2GRWD1
chr63163560631635628+intron-Proximal5.8460223.84012K562AQR
chr63163700731637091+intron-Distal,intron-Proximal3.197104.05119HepG2UCHL5
chr63163644931636469+intron-Proximal4.884434.96013K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CSNK2B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CSNK2B is not available on ENCORE database.

  • 53 RBPs can affect the levels of CSNK2B.  








The Knockdown/knockout RNA-Seq assay for CSNK2B is not available on ENCORE database.





53 RBPs can affect the gene expression of CSNK2B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CSNK2BENSG00000204435.96826.916104169.959700.7111010.968009.87900HepG2BOP1
CSNK2BENSG00000204435.92319.971002748.30470-0.244402.122101.33220HepG2DDX24
CSNK2BENSG00000204435.91963.841902729.73610-0.475108.719407.52640HepG2DNAJC21
CSNK2BENSG00000204435.92852.677903901.22270-0.451604.295103.56530HepG2EIF2S1
CSNK2BENSG00000204435.93597.641304364.39970-0.278702.152701.42810HepG2EIF4G2
CSNK2BENSG00000204435.93235.060804339.77630-0.423803.627102.90270HepG2GPKOW
CSNK2BENSG00000204435.93657.699303110.527000.233704.528903.61010HepG2ILF2
CSNK2BENSG00000204435.93583.748004352.30060-0.280301.969101.41130HepG2MAGOH
CSNK2BENSG00000204435.93756.470204579.03510-0.285703.397702.55470HepG2NOL12
CSNK2BENSG00000204435.93064.582203988.40600-0.380103.147902.37980HepG2PABPC4
CSNK2BENSG00000204435.93531.871204074.84470-0.206302.858602.24490HepG2PCBP1
CSNK2BENSG00000204435.91590.722602044.97510-0.362403.052602.20810HepG2PRPF8
CSNK2BENSG00000204435.93304.227004146.24020-0.327505.853705.11750HepG2PTBP1
CSNK2BENSG00000204435.93878.934404640.36090-0.258605.276204.51080HepG2PUM1
CSNK2BENSG00000204435.93884.666404490.62260-0.209102.243101.67060HepG2QKI
CSNK2BENSG00000204435.92060.484702846.70870-0.466302.274101.63090HepG2RAVER1
CSNK2BENSG00000204435.93492.409304614.42270-0.401909.131208.25180HepG2NELFE
CSNK2BENSG00000204435.93591.428904297.60710-0.259004.252603.51020HepG2RECQL
CSNK2BENSG00000204435.93041.400302711.842400.165402.054101.48560HepG2SAFB2
CSNK2BENSG00000204435.93303.099004099.34900-0.311602.752102.04690HepG2SF3B1
CSNK2BENSG00000204435.93834.341204505.85060-0.232803.891703.35460HepG2SRSF1
CSNK2BENSG00000204435.93137.799403665.70740-0.224303.352202.75670HepG2SRSF9
CSNK2BENSG00000204435.94024.494704595.88420-0.191502.712902.20350HepG2SSB
CSNK2BENSG00000204435.93460.697304049.89880-0.226802.673702.12190HepG2TAF15
CSNK2BENSG00000204435.94972.711702958.902100.748907.986607.21750HepG2TIAL1
CSNK2BENSG00000204435.93352.379002985.393900.167201.946401.45730HepG2TRIM56
CSNK2BENSG00000204435.93333.390304458.53020-0.419604.562303.76610HepG2U2AF1
CSNK2BENSG00000204435.93208.783803877.13410-0.273004.829803.94840HepG2UPF1
CSNK2BENSG00000204435.913354.541609800.422400.4463013.9425012.77210K562AGGF1
CSNK2BENSG00000204435.912152.9320010197.707500.253002.256301.66340K562AKAP8L
CSNK2BENSG00000204435.94947.373105765.30620-0.220703.575202.47810K562BCLAF1
CSNK2BENSG00000204435.97905.062909473.14320-0.261102.949102.13930K562CPSF6
CSNK2BENSG00000204435.912654.6572015578.27470-0.299904.123902.92420K562CELF1
CSNK2BENSG00000204435.913003.5121010973.942000.244703.293202.32760K562DKC1
CSNK2BENSG00000204435.94563.876105915.80920-0.374303.814302.21860K562DNAJC21
CSNK2BENSG00000204435.97554.583505595.817000.432902.332901.41640K562EIF3A
CSNK2BENSG00000204435.94874.567403595.665100.438907.980806.63620K562EIF3G
CSNK2BENSG00000204435.910673.2084012670.16080-0.247403.704102.61820K562EIF4G2
CSNK2BENSG00000204435.96688.937308169.67610-0.288502.290501.46310K562FTO
CSNK2BENSG00000204435.92445.264703674.74230-0.587703.281202.49880K562G3BP2
CSNK2BENSG00000204435.96468.527307829.53240-0.275502.956801.84400K562HNRNPA1
CSNK2BENSG00000204435.95643.590107585.37300-0.426606.389805.51930K562HNRNPC
CSNK2BENSG00000204435.910162.472508087.943000.329302.515401.63040K562HNRNPM
CSNK2BENSG00000204435.912833.1074010359.658900.308803.143201.97800K562MAK16
CSNK2BENSG00000204435.97478.013009106.94890-0.284304.368403.37280K562MTPAP
CSNK2BENSG00000204435.910651.2664013824.18490-0.376204.437803.41080K562PUF60
CSNK2BENSG00000204435.912477.4881014703.60040-0.236802.603201.56990K562PUM1
CSNK2BENSG00000204435.912224.9963014407.21870-0.237003.338502.28300K562PUM2
CSNK2BENSG00000204435.914348.1257010113.874100.504402.868602.31800K562PUS1
CSNK2BENSG00000204435.912819.113709853.993800.379407.088306.16890K562RBM15
CSNK2BENSG00000204435.97542.353006134.721900.297902.479101.53670K562RPS3
CSNK2BENSG00000204435.94733.016403818.138700.309802.074801.33650K562SF3B4
CSNK2BENSG00000204435.97016.016405883.446500.253902.221501.32330K562SRFBP1
CSNK2BENSG00000204435.98780.1459010228.92880-0.220302.815601.87340K562SRPK2
CSNK2BENSG00000204435.910036.5699012902.76160-0.362403.936802.29800K562SSRP1
CSNK2BENSG00000204435.99226.9748011801.54780-0.355002.663601.44230K562STAU1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CSNK2B is not available on ENCORE database.





3 RBPs can affect the splicing of CSNK2B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECSNK2BENSG00000204435.9chr6+3163391731633985316330123163327031634597316350790.054000.000440.04607includedHepG2SUPV3L1
MXECSNK2BENSG00000204435.9chr6+31635644316357473163631531637285316345973163468031637612316381200.100000.000170.003821includedK562U2AF2
MXECSNK2BENSG00000204435.9chr6+3163564431635747316363153163728531634597316346803163761231638120-0.070000.002280.062412includedK562DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CSNK2B is not avaliable on ENCORE database.