PSMB3

General Information

Gene Name : PSMB3
Gene ID : ENSG00000277791.4
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PSMB3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PSMB3	ENSG00000277791.4	174.96	240.06	207.51	ENCSR000AEF
HepG2	PSMB3	ENSG00000277791.4	407.35	328.32	367.84	ENCSR985KAT
K562	PSMB3	ENSG00000277791.4	388.83	392.51	390.67	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PSMB3 is not avaliable on ENCORE database.

Proteins bound to RNA

PSMB3 RNA is bound by 13 proteins.

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eCLIP assay for PSMB3 is not avaliable on ENCORE database.

13 proteins are bound to PSMB3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	36909029	36909084	+	5'-UTR,CDS,intron-Proximal	4.46033	41.90257	K562	DDX3X
chr17	36909535	36909585	+	CDS	4.70878	40.61840	K562	RPS3
chr17	36909402	36909448	+	5'-UTR,CDS,intron-Proximal	5.85193	31.01671	HepG2	SUB1
chr17	36909525	36909588	+	CDS,intron-Proximal	4.79929	26.74103	HepG2	RPS3
chr17	36909406	36909455	+	5'-UTR,CDS	3.18928	25.71670	K562	DDX3X
chr17	36916705	36916728	+	CDS,intron-Distal,intron-Proximal	3.79860	17.44716	K562	YBX3
chr17	36916706	36916744	+	CDS,intron-Distal,intron-Proximal	5.65724	17.35258	K562	RPS3
chr17	36909035	36909082	+	5'-UTR,CDS,intron-Proximal	4.47779	16.71931	K562	PABPC4
chr17	36918692	36918743	+	3'-UTR,CDS	4.32866	14.79781	K562	PABPC4
chr17	36916728	36916756	+	CDS,intron-Distal,intron-Proximal	3.04976	13.84839	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 40 entries

eCLIP assay for PSMB3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PSMB3 is not available on ENCORE database.
101 RBPs can affect the levels of PSMB3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PSMB3 is not available on ENCORE database.

101 RBPs can affect the gene expression of PSMB3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PSMB3	ENSG00000108294.4	2035.64290	1089.80420	0.90130	36.15520	34.75900	HepG2	ZNF622
PSMB3	ENSG00000108294.4	1410.74670	2521.05960	-0.83760	22.64360	20.74910	HepG2	EIF4G1
PSMB3	ENSG00000108294.4	2814.23930	1779.48070	0.66120	19.50850	18.11780	K562	AGGF1
PSMB3	ENSG00000108294.4	3521.23770	1836.17670	0.93930	18.88520	17.50010	K562	PUS1
PSMB3	ENSG00000108294.4	1155.81460	1956.23730	-0.75920	17.46680	16.23250	HepG2	TAF15
PSMB3	ENSG00000108294.4	1328.58640	2169.08290	-0.70720	14.75160	13.47170	HepG2	QKI
PSMB3	ENSG00000108294.4	1821.22680	2639.81470	-0.53550	13.40030	12.44070	HepG2	SSB
PSMB3	ENSG00000108294.4	632.66180	1393.36240	-1.13910	13.96560	12.10400	K562	G3BP2
PSMB3	ENSG00000108294.4	1102.57980	1872.17840	-0.76380	13.18940	11.96630	K562	HNRNPC
PSMB3	ENSG00000108294.4	1410.48840	2075.88480	-0.55750	12.07560	10.92490	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 125 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PSMB3 is not available on ENCORE database.

10 RBPs can affect the splicing of PSMB3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PSMB3	ENSG00000108294.4	chr17	+	36916683	36916861			36912135	36912243	36918663	36918758	-0.09000	0.00000	0.00000	excluded	K562	SRSF1
SE	PSMB3	ENSG00000108294.4	chr17	+	36916683	36916861			36912135	36912243	36918663	36918758	-0.19400	0.00000	0.00000	excluded	K562	PRPF8
SE	PSMB3	ENSG00000108294.4	chr17	+	36916683	36916824			36912135	36912243	36918663	36918758	-0.05500	0.00000	0.00007	excluded	K562	AQR
SE	PSMB3	ENSG00000108294.4	chr17	+	36916683	36916861			36912135	36912243	36918663	36918758	-0.15500	0.00000	0.00000	excluded	K562	EFTUD2
SE	PSMB3	ENSG00000108294.4	chr17	+	36916683	36916861			36912135	36912243	36918663	36918758	-0.06500	0.00000	0.00000	excluded	K562	TARDBP
SE	PSMB3	ENSG00000108294.4	chr17	+	36916683	36916861			36912135	36912243	36918663	36918758	-0.06600	0.00000	0.00000	excluded	K562	HNRNPU
SE	PSMB3	ENSG00000108294.4	chr17	+	36916683	36916861			36912135	36912243	36918663	36918758	-0.16200	0.00000	0.00000	excluded	K562	HNRNPC
MXE	PSMB3	ENSG00000108294.4	chr17	+	36912135	36912243	36916683	36916861	36909402	36909587	36918663	36918758	0.13700	0.00000	0.00022	1included	K562	EFTUD2
SE	PSMB3	ENSG00000108294.4	chr17	+	36916683	36916861			36912135	36912243	36918663	36918758	-0.05100	0.00002	0.00104	excluded	HepG2	SF3A3
SE	PSMB3	ENSG00000108294.4	chr17	+	36916683	36916824			36912135	36912243	36918663	36918758	-0.06200	0.00035	0.03091	excluded	HepG2	TIAL1

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PSMB3

General Information

Functions

Localization

Domains (AlphaFold: PSMB3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PSMB3 is not avaliable on ENCORE database.

13 proteins are bound to PSMB3 RNA:

eCLIP assay for PSMB3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PSMB3 is not available on ENCORE database.

101 RBPs can affect the gene expression of PSMB3 :

The Knockdown/knockout RNA-Seq assay for PSMB3 is not available on ENCORE database.

10 RBPs can affect the splicing of PSMB3 :

The Knockdown/knockout RNA-Seq assay for PSMB3 is not avaliable on ENCORE database.