NDUFB1

General Information

Gene Name       : NDUFB1
Gene ID             : ENSG00000183648.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NDUFB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NDUFB1ENSG00000183648.9358.34352.91355.62ENCSR000AEF
HepG2NDUFB1ENSG00000183648.9164.35221.84193.09ENCSR985KAT
K562NDUFB1ENSG00000183648.9251.53197.52224.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NDUFB1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NDUFB1 RNA is bound by 11 proteins.  







eCLIP assay for NDUFB1 is not avaliable on ENCORE database.





11 proteins are bound to NDUFB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr149258396392583986-3'-UTR,CDS,intron-Distal5.5823826.01740K562DDX3X
chr149258251792582573-3'-UTR,CDS,intron-Distal4.471199.76542K562DDX3X
chr149258250992582595-3'-UTR,CDS,intron-Distal3.209313.70059HepG2U2AF2
chr149258384492583987-3'-UTR,CDS,intron-Distal,intron-Proximal4.155164.28365K562NOLC1
chr149258249492582533-3'-UTR,intron-Distal4.601224.89487HepG2LARP4
chr149258798592588013-5'-UTR,CDS,intron-Distal5.7811626.45593K562DDX3X
chr149258798392588030-5'-UTR,CDS,intron-Distal3.577277.31899HepG2DDX3X
chr149258762692587757-5'-UTR,intron-Distal,intron-Proximal3.284403.63043HepG2GRWD1
chr149258793892588009-5'-UTR,CDS,intron-Distal3.8610510.34449HepG2PRPF8
chr149258793092587987-5'-UTR,CDS,intron-Distal3.580568.43762HepG2RBFOX2
chr149258384192583952-CDS,intron-Distal,intron-Proximal3.390193.91821K562APOBEC3C
chr149258384192583847-CDS,intron-Distal,intron-Proximal3.352674.32502K562DDX3X
chr149258384792583957-CDS,intron-Distal3.9664726.89860K562DDX3X
chr149258777592587828-intron-Distal,intron-Proximal5.173509.44415HepG2RBFOX2
chr149258781892587922-intron-Distal,intron-Proximal4.278814.36329HepG2PRPF4
chr149258620292586259-intron-Distal3.221253.20171HepG2ILF3
chr149258782892587930-intron-Distal,intron-Proximal5.1125534.51438HepG2RBFOX2
chr149258783392587930-intron-Distal,intron-Proximal4.663704.37414K562RBFOX2
chr149258793692587979-intron-Distal3.474144.27210HepG2NCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NDUFB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NDUFB1 is not available on ENCORE database.

  • 59 RBPs can affect the levels of NDUFB1.  








The Knockdown/knockout RNA-Seq assay for NDUFB1 is not available on ENCORE database.





59 RBPs can affect the gene expression of NDUFB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NDUFB1ENSG00000183648.5465.43800307.720200.596903.133302.12950HepG2ABCF1
NDUFB1ENSG00000183648.5342.34190548.42550-0.679907.777806.71990HepG2AUH
NDUFB1ENSG00000183648.5400.67190285.619400.488202.721202.04770HepG2DDX21
NDUFB1ENSG00000183648.5779.82460560.799200.475603.161602.49780HepG2DDX3X
NDUFB1ENSG00000183648.5118.94360211.53640-0.830602.954801.94570HepG2DDX59
NDUFB1ENSG00000183648.5292.65740481.67120-0.718804.524003.75060HepG2DDX6
NDUFB1ENSG00000183648.5402.92790261.977300.621004.997604.13650HepG2DKC1
NDUFB1ENSG00000183648.5411.21510284.016900.533802.317001.47210HepG2EEF2
NDUFB1ENSG00000183648.5313.37980463.10870-0.563403.286502.64420HepG2EIF2S1
NDUFB1ENSG00000183648.5453.10420629.72350-0.474904.598203.85890HepG2ETF1
NDUFB1ENSG00000183648.5489.33170289.772700.755805.911704.92740HepG2HNRNPC
NDUFB1ENSG00000183648.5324.63270484.91530-0.578903.693602.89590HepG2HNRNPK
NDUFB1ENSG00000183648.5307.30580201.538600.608503.065102.40730HepG2HNRNPLL
NDUFB1ENSG00000183648.5365.68780486.91510-0.413102.022201.43610HepG2IGF2BP2
NDUFB1ENSG00000183648.5163.12660456.87550-1.485806.683205.19350HepG2IGF2BP3
NDUFB1ENSG00000183648.5267.00330378.32270-0.502802.242501.50220HepG2LARP4
NDUFB1ENSG00000183648.5405.92410251.431900.690904.813403.76700HepG2MSI2
NDUFB1ENSG00000183648.5176.18310341.86900-0.956402.877201.76010HepG2NONO
NDUFB1ENSG00000183648.5343.49430473.52210-0.463102.430201.74960HepG2PABPC4
NDUFB1ENSG00000183648.5114.49540287.43490-1.327909.046407.67760HepG2PRPF8
NDUFB1ENSG00000183648.5500.90370604.80120-0.271901.900401.38880HepG2PUM1
NDUFB1ENSG00000183648.5398.49920604.35690-0.600805.458504.53220HepG2PUM2
NDUFB1ENSG00000183648.5394.55190278.912400.500303.853503.14980HepG2PUS1
NDUFB1ENSG00000183648.5183.93320441.24350-1.262403.823501.66970HepG2RBM17
NDUFB1ENSG00000183648.5341.93290526.32030-0.622205.822805.14050HepG2RBM22
NDUFB1ENSG00000183648.5391.92470493.17400-0.331501.971901.43950HepG2RECQL
NDUFB1ENSG00000183648.5185.31050284.34550-0.617702.352101.62110HepG2RRP9
NDUFB1ENSG00000183648.5186.16090426.33430-1.195403.623902.02940HepG2SF1
NDUFB1ENSG00000183648.5196.07130413.71480-1.077302.822401.35690HepG2SFPQ
NDUFB1ENSG00000183648.5150.12130381.00220-1.343704.778602.94150HepG2SNRNP200
NDUFB1ENSG00000183648.5384.16170594.43820-0.629807.340506.63120HepG2SRFBP1
NDUFB1ENSG00000183648.5397.00380562.53350-0.502804.609503.83750HepG2SRSF5
NDUFB1ENSG00000183648.5329.33130420.62860-0.353002.155201.65560HepG2SRSF9
NDUFB1ENSG00000183648.5733.24930516.076000.506605.635004.95320HepG2SSB
NDUFB1ENSG00000183648.5508.28720639.75160-0.331902.681802.06720HepG2SUCLG1
NDUFB1ENSG00000183648.5305.85800426.99310-0.481403.033402.16370HepG2TIA1
NDUFB1ENSG00000183648.5214.09200282.20430-0.398502.158801.64820HepG2TRIM56
NDUFB1ENSG00000183648.5128.99200265.77320-1.042906.498205.55240HepG2U2AF1
NDUFB1ENSG00000183648.5116.56100443.21350-1.926907.856106.10990HepG2U2AF2
NDUFB1ENSG00000183648.5310.86330589.16920-0.922403.970902.95790HepG2UBE2L3
NDUFB1ENSG00000183648.5484.41140339.631700.512202.654401.67100HepG2UPF2
NDUFB1ENSG00000183648.5572.27090365.001800.648705.063404.09050HepG2XRN2
NDUFB1ENSG00000183648.5443.51770820.68510-0.887809.815908.81470K562AQR
NDUFB1ENSG00000183648.5356.29000496.08190-0.477503.814002.67590K562BCLAF1
NDUFB1ENSG00000183648.5247.02640376.35200-0.607403.792002.52860K562CSTF2
NDUFB1ENSG00000183648.5446.04900559.16930-0.326102.331601.72510K562DDX47
NDUFB1ENSG00000183648.5621.02570435.481900.511903.827102.81890K562FIP1L1
NDUFB1ENSG00000183648.5421.90740336.331600.326901.901901.38170K562FXR1
NDUFB1ENSG00000183648.5192.50510270.17590-0.489002.162101.45780K562GPKOW
NDUFB1ENSG00000183648.5393.55980509.29200-0.371902.521001.66710K562HNRNPU
NDUFB1ENSG00000183648.5250.38260517.04330-1.0462012.531309.85030K562IGF2BP3
NDUFB1ENSG00000183648.5311.14950483.48510-0.635906.622905.53670K562NSUN2
NDUFB1ENSG00000183648.5654.11970494.385000.403802.577501.79020K562PPIG
NDUFB1ENSG00000183648.5658.44440404.083300.704305.901205.14540K562PUS1
NDUFB1ENSG00000183648.5377.31620497.51670-0.399002.382601.60760K562RBM22
NDUFB1ENSG00000183648.5266.53240422.85950-0.665903.050201.44390K562SBDS
NDUFB1ENSG00000183648.5333.78870477.09360-0.515304.303303.30270K562SF3A3
NDUFB1ENSG00000183648.5267.73100408.22930-0.608604.773603.63760K562SF3B4
NDUFB1ENSG00000183648.5331.50710488.79420-0.560205.115203.88860K562SRPK2
NDUFB1ENSG00000183648.5198.17390299.33060-0.595003.011802.01630K562TRIM56
NDUFB1ENSG00000183648.5280.27380393.01670-0.487803.166802.30830K562U2AF2
NDUFB1ENSG00000183648.5383.74000512.65040-0.417803.281902.50340K562UPF1
NDUFB1ENSG00000183648.5335.97690438.65730-0.384702.210201.42840K562WDR3
NDUFB1ENSG00000183648.5711.40020924.61580-0.378202.969102.07080K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NDUFB1 is not available on ENCORE database.





2 RBPs can affect the splicing of NDUFB1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENDUFB1ENSG00000183648.5chr14-9258519292585310925838419258398692587985925880680.067000.000010.00095includedHepG2HNRNPC
SENDUFB1ENSG00000183648.5chr14-9258519292585310925838419258398692587985925880680.082000.001000.01934includedK562HNRNPC
MXENDUFB1ENSG00000183648.5chr14-9258519292585310925875399258775792583841925839869258798592588068-0.195000.000370.028182includedHepG2AKAP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NDUFB1 is not avaliable on ENCORE database.