SCGN

General Information

Gene Name       : SCGN
Gene ID             : ENSG00000079689.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCGN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCGNENSG00000079689.130.000.000.00ENCSR000AEF
HepG2SCGNENSG00000079689.137.6310.619.12ENCSR985KAT
K562SCGNENSG00000079689.130.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCGN is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCGN RNA is bound by 1 proteins.  







eCLIP assay for SCGN is not avaliable on ENCORE database.





1 proteins are bound to SCGN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62569129525691376+3'-UTR,CDS,intron-Proximal5.814515.68502HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCGN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCGN is not available on ENCORE database.

  • 132 RBPs can affect the levels of SCGN.  








The Knockdown/knockout RNA-Seq assay for SCGN is not available on ENCORE database.





132 RBPs can affect the gene expression of SCGN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCGNENSG00000079689.9408.78810256.212800.673903.506202.45000HepG2ABCF1
SCGNENSG00000079689.9382.03350146.798401.3798014.4628012.45860HepG2ADAR
SCGNENSG00000079689.9299.13160186.113400.684503.001202.44970HepG2AKAP1
SCGNENSG00000079689.9213.0952061.628901.7897011.036509.11710HepG2AKAP8
SCGNENSG00000079689.9405.70430178.295201.1861015.1237013.53710HepG2AKAP8L
SCGNENSG00000079689.960.6664016.260201.899504.388902.23860HepG2APOBEC3C
SCGNENSG00000079689.9445.21860231.494900.943407.088804.97000HepG2ATP5C1
SCGNENSG00000079689.9851.13020417.259901.0283020.7250019.15970HepG2AUH
SCGNENSG00000079689.9581.92830211.738301.4585014.3470012.11510HepG2BCCIP
SCGNENSG00000079689.9612.14520183.961701.7344021.8035019.65180HepG2BCLAF1
SCGNENSG00000079689.91274.45770206.486802.6257065.8189063.74100HepG2BOP1
SCGNENSG00000079689.9513.42280150.128801.7738025.9625024.08280HepG2CALR
SCGNENSG00000079689.91677.47850146.305303.51910124.84000121.48180HepG2CIRBP
SCGNENSG00000079689.9383.10790177.421801.1105013.8182012.56640HepG2CKAP4
SCGNENSG00000079689.9119.82160189.56970-0.661802.519801.85820HepG2CPSF6
SCGNENSG00000079689.9437.29520182.531601.260409.321806.54910HepG2CSTF2T
SCGNENSG00000079689.9424.57440290.447100.547604.572103.65550HepG2DAZAP1
SCGNENSG00000079689.9272.82360164.128200.733005.782504.63610HepG2DDX19B
SCGNENSG00000079689.9498.76560150.753601.726108.599906.74140HepG2DDX1
SCGNENSG00000079689.91336.40350196.622502.7648059.9159057.45560HepG2DDX21
SCGNENSG00000079689.9297.13350192.448600.626503.577102.53060HepG2DDX24
SCGNENSG00000079689.9451.97440157.673901.5192015.4436012.79530HepG2DDX28
SCGNENSG00000079689.9814.53980178.286302.1917040.3350038.23380HepG2DDX3X
SCGNENSG00000079689.9234.00300122.067700.938705.686703.82830HepG2DDX52
SCGNENSG00000079689.9482.51130208.194301.212509.537108.20150HepG2DDX55
SCGNENSG00000079689.9494.72610215.269101.200407.970606.35810HepG2DDX59
SCGNENSG00000079689.9154.67590242.99340-0.651702.721801.71780HepG2DDX5
SCGNENSG00000079689.981.99960147.82580-0.850203.842703.02500HepG2DNAJC21
SCGNENSG00000079689.9539.91350146.504701.8817044.5901042.25620HepG2DNAJC2
SCGNENSG00000079689.9458.19270145.621701.6536017.8489015.83350HepG2EEF2
SCGNENSG00000079689.9244.69450121.378401.011406.046604.40610HepG2EFTUD2
SCGNENSG00000079689.9311.27330181.092900.781404.276902.88600HepG2AGO1
SCGNENSG00000079689.9799.09070147.228602.4402048.6708046.45120HepG2EIF2S1
SCGNENSG00000079689.9310.29060194.509500.673703.115501.87110HepG2EIF2S2
SCGNENSG00000079689.9222.04610118.200900.909504.732003.57380HepG2EIF3D
SCGNENSG00000079689.9400.09520185.703801.1072011.492809.60000HepG2EIF3G
SCGNENSG00000079689.959.75110162.70910-1.445307.641306.58150HepG2EIF4A3
SCGNENSG00000079689.91718.64370158.412203.4394083.9170080.68310HepG2EIF4B
SCGNENSG00000079689.9412.92670286.530600.527103.875902.91470HepG2EIF4G1
SCGNENSG00000079689.9149.20480274.48040-0.879404.108303.12730HepG2EIF4G2
SCGNENSG00000079689.9368.64510222.073500.731103.503702.28110HepG2ESF1
SCGNENSG00000079689.91551.78980479.051601.6956068.9859066.75020HepG2ETF1
SCGNENSG00000079689.91182.52520173.411002.7695022.6974020.52350HepG2EWSR1
SCGNENSG00000079689.9173.64050105.665000.716503.208601.93720HepG2FAM120A
SCGNENSG00000079689.9566.75640189.887201.577509.235507.41310HepG2FTO
SCGNENSG00000079689.913.73360100.48990-2.8713014.0640012.35000HepG2FUBP3
SCGNENSG00000079689.9596.03040218.307201.4489014.8531012.55170HepG2FUS
SCGNENSG00000079689.9372.95270164.154101.183809.849308.61610HepG2FXR1
SCGNENSG00000079689.9425.50930105.239202.0154026.1135023.76170HepG2GEMIN5
SCGNENSG00000079689.9759.18680214.901801.8207024.8311023.12410HepG2GPKOW
SCGNENSG00000079689.9102.7981016.116402.673107.536505.71860HepG2GRSF1
SCGNENSG00000079689.9593.17110209.324101.502607.912205.51240HepG2HLTF
SCGNENSG00000079689.990.5598014.671402.625806.604204.43310HepG2HNRNPA0
SCGNENSG00000079689.9923.30220149.241902.6291068.5443066.24130HepG2HNRNPA1
SCGNENSG00000079689.9442.21010266.921800.728206.915005.55370HepG2HNRNPA2B1
SCGNENSG00000079689.9262.70540154.185500.768703.988303.16370HepG2HNRNPK
SCGNENSG00000079689.9582.75990205.083901.5066019.7470018.30030HepG2HNRNPLL
SCGNENSG00000079689.9446.25970178.644701.3207017.0156014.99930HepG2HNRNPM
SCGNENSG00000079689.9390.84150164.901701.244909.480608.40980HepG2HNRNPU
SCGNENSG00000079689.9199.4948067.077301.572409.112206.94650HepG2HSPD1
SCGNENSG00000079689.9182.82630276.23440-0.595403.260402.47940HepG2IGF2BP1
SCGNENSG00000079689.9367.32140154.795301.2466010.256209.04400HepG2IGF2BP2
SCGNENSG00000079689.9239.03910168.442500.504902.685301.96300HepG2ILF2
SCGNENSG00000079689.985.79060162.22280-0.919105.073103.70030HepG2KIF1C
SCGNENSG00000079689.9575.36680273.681101.071909.082607.57190HepG2LARP4
SCGNENSG00000079689.9271.58870164.211300.725803.687302.93060HepG2MAGOH
SCGNENSG00000079689.9590.47830165.132401.8382023.8753022.17640HepG2MATR3
SCGNENSG00000079689.9458.66880123.699801.8905010.127408.25010HepG2METAP2
SCGNENSG00000079689.9543.61980209.601901.3748019.5825017.68330HepG2MSI2
SCGNENSG00000079689.9398.74380209.137400.930905.262703.89970HepG2MTPAP
SCGNENSG00000079689.9729.46640169.023902.109505.157004.30430HepG2NCBP2
SCGNENSG00000079689.9223.2528063.572501.812103.233901.68590HepG2NKRF
SCGNENSG00000079689.9373.30430191.235000.964904.363002.97040HepG2NONO
SCGNENSG00000079689.970.24740181.83900-1.372107.034205.87790HepG2NSUN2
SCGNENSG00000079689.9160.8344088.347900.864203.208601.48810HepG2PA2G4
SCGNENSG00000079689.9253.30310163.231000.633803.756302.78660HepG2PARN
SCGNENSG00000079689.9548.81330153.817601.8350037.5034035.71880HepG2PCBP1
SCGNENSG00000079689.9119.35990206.65260-0.791903.350102.21090HepG2PCBP2
SCGNENSG00000079689.9116.39820243.36710-1.064108.475807.22440HepG2PRPF4
SCGNENSG00000079689.9640.32160217.236501.5594016.1666013.65540HepG2PRPF6
SCGNENSG00000079689.9845.05560160.542902.3960045.4961042.86930HepG2PRPF8
SCGNENSG00000079689.9516.67980271.562600.927903.501701.50590HepG2PSIP1
SCGNENSG00000079689.91066.06100156.509202.7679044.6055042.97130HepG2PTBP1
SCGNENSG00000079689.9385.75340274.922600.488602.740602.14670HepG2PUF60
SCGNENSG00000079689.9504.46790291.837500.7895010.230609.24040HepG2PUM1
SCGNENSG00000079689.92006.82220180.760003.47270127.18320124.34760HepG2PUS1
SCGNENSG00000079689.937.30000199.40340-2.4184013.7670012.30310HepG2RAVER1
SCGNENSG00000079689.92804.08300400.402402.80790188.73770185.88500HepG2RBM22
SCGNENSG00000079689.9299.24240153.841900.959805.330704.42360HepG2RBM25
SCGNENSG00000079689.9590.99640174.184601.7624032.7203031.29840HepG2NELFE
SCGNENSG00000079689.9361.35150162.220301.1553011.9100010.76480HepG2RECQL
SCGNENSG00000079689.9485.13330302.185700.682805.215604.31620HepG2RPLP0
SCGNENSG00000079689.974.14640195.91350-1.401807.659106.15880HepG2RPS10
SCGNENSG00000079689.9521.67610115.026402.1811036.6567034.86200HepG2RPS19
SCGNENSG00000079689.91116.03960265.035002.0740039.3183036.58160HepG2RPS2
SCGNENSG00000079689.9191.1002017.435803.4541026.0972023.77100HepG2RPS3A
SCGNENSG00000079689.9325.32800158.804001.034506.168405.04360HepG2RRP9
SCGNENSG00000079689.982.04880146.85530-0.839803.816603.08100HepG2SAFB2
SCGNENSG00000079689.9505.93980245.654301.042202.988601.57190HepG2SF1
SCGNENSG00000079689.9651.43360202.998201.6821027.2208025.27930HepG2SF3B1
SCGNENSG00000079689.9374.33140162.957001.199706.411305.57230HepG2SF3B4
SCGNENSG00000079689.9506.17900238.573801.085102.978701.46150HepG2SFPQ
SCGNENSG00000079689.9141.68380263.59760-0.895706.862105.83760HepG2SLBP
SCGNENSG00000079689.9360.19380171.263301.0725010.373009.25840HepG2SMN1
SCGNENSG00000079689.9397.55730225.869100.815603.285402.43110HepG2SNRNP70
SCGNENSG00000079689.9772.51170452.246600.7723012.5801011.71700HepG2SRFBP1
SCGNENSG00000079689.9917.08080170.087402.4307078.3212076.59840HepG2SRSF1
SCGNENSG00000079689.9353.68260218.410600.695303.614002.45450HepG2SRSF3
SCGNENSG00000079689.966.65200138.37140-1.053805.357104.63350HepG2SRSF9
SCGNENSG00000079689.9197.5266066.861501.562709.415407.26870HepG2SSRP1
SCGNENSG00000079689.9106.22740186.35300-0.810902.737601.54110HepG2SUB1
SCGNENSG00000079689.91462.33940308.707202.24390115.52650112.71340HepG2SUCLG1
SCGNENSG00000079689.9838.55730207.236202.0165030.5276028.73110HepG2SUPV3L1
SCGNENSG00000079689.9635.50910199.867201.6688026.4995024.70450HepG2TARDBP
SCGNENSG00000079689.9605.2599065.672103.2041033.1979030.21750HepG2TBRG4
SCGNENSG00000079689.9355.62630138.892201.3563010.424708.73730HepG2TFIP11
SCGNENSG00000079689.9112.14810160.25250-0.514901.926101.49250HepG2TIAL1
SCGNENSG00000079689.9344.03880200.255500.780603.974602.22780HepG2TRA2A
SCGNENSG00000079689.9628.34010221.452001.5045015.9505014.39360HepG2U2AF1
SCGNENSG00000079689.9826.67790255.345801.694807.015005.37310HepG2U2AF2
SCGNENSG00000079689.942.01530122.40850-1.542707.588006.33060HepG2UCHL5
SCGNENSG00000079689.9522.96000312.220500.744002.259601.61770HepG2UPF1
SCGNENSG00000079689.9395.36220189.717301.059206.181204.63250HepG2UPF2
SCGNENSG00000079689.9978.38960320.942001.6080013.2962011.23310HepG2UTP18
SCGNENSG00000079689.9695.02020301.441301.2051017.7607016.44140HepG2UTP3
SCGNENSG00000079689.992.32620196.12030-1.086904.700203.04460HepG2XRCC5
SCGNENSG00000079689.9412.43460219.311600.911105.951904.43370HepG2XRCC6
SCGNENSG00000079689.9456.60900204.001901.162309.356208.04410HepG2XRN2
SCGNENSG00000079689.9145.15290240.16520-0.726504.589103.75920HepG2ZC3H8
SCGNENSG00000079689.91474.24180343.387102.10200115.65590113.53980HepG2ZNF622
SCGNENSG00000079689.919.275002.630302.873302.720301.30640K562CKAP4
SCGNENSG00000079689.912.874601.700602.920302.360201.46110K562CELF1
SCGNENSG00000079689.933.952201.470604.528906.808205.27460K562KRR1
SCGNENSG00000079689.933.545601.684404.315705.681704.39810K562METAP2
SCGNENSG00000079689.99.155300.0000099999.999902.789902.24520K562PUS1
SCGNENSG00000079689.914.155201.637103.112002.191101.33590K562SF3B1
SCGNENSG00000079689.926.879302.007603.742805.946504.60430K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCGN is not available on ENCORE database.





1 RBPs can affect the splicing of SCGN :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXESCGNENSG00000079689.9chr6+25669738256697952567022625670304256651702566526025682178256822340.324000.000000.000011includedHepG2U2AF2
MXESCGNENSG00000079689.9chr6+25669738256697952568217825682234256651702566526025689399256894450.289000.000000.000011includedHepG2U2AF2
MXESCGNENSG00000079689.9chr6+25670226256703042568217825682234256697382566979525689399256894450.209000.003490.022661includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCGN is not avaliable on ENCORE database.