BCL6

General Information

Gene Name : BCL6
Gene ID : ENSG00000113916.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BCL6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BCL6	ENSG00000113916.17	0.17	0.21	0.19	ENCSR000AEF
HepG2	BCL6	ENSG00000113916.17	25.66	21.32	23.49	ENCSR985KAT
K562	BCL6	ENSG00000113916.17	1.90	1.91	1.90	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BCL6 is not avaliable on ENCORE database.

Proteins bound to RNA

BCL6 RNA is bound by 49 proteins.

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eCLIP assay for BCL6 is not avaliable on ENCORE database.

49 proteins are bound to BCL6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	187461457	187461542	-	intron-Distal	3.93350	52.41847	HepG2	CSTF2T
chr3	187461363	187461455	-	intron-Distal	5.51752	36.16701	K562	CSTF2T
chr3	187461455	187461533	-	intron-Distal	4.09878	34.19670	K562	CSTF2T
chr3	187461561	187461618	-	intron-Distal	4.93003	28.48939	HepG2	CSTF2T
chr3	187462844	187462903	-	intron-Distal	4.38773	28.31453	HepG2	HNRNPM
chr3	187461833	187461918	-	intron-Distal	3.73643	26.64319	K562	CSTF2T
chr3	187454800	187454846	-	5'-UTR,intron-Distal	5.13574	25.87936	HepG2	HNRNPM
chr3	187462756	187462770	-	intron-Distal	4.41637	25.23336	K562	TIA1
chr3	187454403	187454462	-	5'-UTR,intron-Distal,intron-Proximal	4.97166	25.07015	HepG2	HNRNPM
chr3	187461677	187461760	-	intron-Distal	3.73989	24.40311	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 213 entries

eCLIP assay for BCL6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BCL6 is not available on ENCORE database.
165 RBPs can affect the levels of BCL6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BCL6 is not available on ENCORE database.

165 RBPs can affect the gene expression of BCL6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BCL6	ENSG00000113916.13	724.72650	3654.82730	-2.33430	200.25940	197.93730	HepG2	SRSF1
BCL6	ENSG00000113916.13	4719.06970	1364.43230	1.79010	122.39600	119.24100	HepG2	HNRNPF
BCL6	ENSG00000113916.13	3686.92870	1340.56570	1.45950	83.75740	81.26150	HepG2	SRSF7
BCL6	ENSG00000113916.13	1842.63590	4411.20420	-1.25940	76.25330	73.82160	HepG2	UTP3
BCL6	ENSG00000113916.13	2517.84790	408.58160	2.62340	73.63910	69.72120	K562	FMR1
BCL6	ENSG00000113916.13	929.55500	3074.01140	-1.72550	68.53720	65.24790	HepG2	HNRNPM
BCL6	ENSG00000113916.13	6110.88580	2688.51760	1.18450	67.65910	64.93520	HepG2	PRPF4
BCL6	ENSG00000113916.13	4707.57770	1419.26700	1.72970	61.09660	58.51600	HepG2	NSUN2
BCL6	ENSG00000113916.13	1330.58500	3605.79570	-1.43830	51.03350	48.39400	HepG2	MSI2
BCL6	ENSG00000113916.13	735.26060	2165.26670	-1.55820	50.38920	48.38750	HepG2	RPS19
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 215 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BCL6 is not available on ENCORE database.

6 RBPs can affect the splicing of BCL6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	BCL6	ENSG00000113916.13	chr3	-	187444518	187444686			187443286	187443417	187446147	187446332	-0.16600	0.00000	0.00007	excluded	HepG2	PCBP1
MXE	BCL6	ENSG00000113916.13	chr3	-	187444518	187444686	187446147	187446302	187443286	187443417	187446837	187447809	-0.11800	0.00006	0.00070	2included	HepG2	U2AF2
SE	BCL6	ENSG00000113916.13	chr3	-	187444518	187444686			187443286	187443417	187446147	187446332	-0.14800	0.00018	0.01810	excluded	HepG2	TIAL1
SE	BCL6	ENSG00000113916.13	chr3	-	187444518	187444686			187443286	187443417	187446147	187446332	-0.11700	0.00040	0.02338	excluded	HepG2	SFPQ
SE	BCL6	ENSG00000113916.13	chr3	-	187444518	187444686			187443286	187443417	187446147	187446332	-0.09500	0.00046	0.03220	excluded	HepG2	NCBP2
SE	BCL6	ENSG00000113916.13	chr3	-	187444518	187444686			187443286	187443417	187446147	187446332	0.06200	0.00059	0.00894	included	HepG2	U2AF2
A3SS	BCL6	ENSG00000113916.13	chr3	-	187443286	187443532			187443286	187443417	187444518	187444686	-0.07100	0.00078	0.08289	shorter	K562	HNRNPC
MXE	BCL6	ENSG00000113916.13	chr3	-	187444518	187444686	187446147	187446332	187443286	187443417	187446837	187447809	0.10100	0.01003	0.05402	1included	HepG2	U2AF2

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BCL6

General Information

Functions

Localization

Domains (AlphaFold: BCL6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BCL6 is not avaliable on ENCORE database.

49 proteins are bound to BCL6 RNA:

eCLIP assay for BCL6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BCL6 is not available on ENCORE database.

165 RBPs can affect the gene expression of BCL6 :

The Knockdown/knockout RNA-Seq assay for BCL6 is not available on ENCORE database.

6 RBPs can affect the splicing of BCL6 :

The Knockdown/knockout RNA-Seq assay for BCL6 is not avaliable on ENCORE database.