ATP5J2-PTCD1

General Information

Gene Name       : ATP5J2-PTCD1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATP5J2-PTCD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATP5J2-PTCD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATP5J2-PTCD1 RNA is bound by 24 proteins.  







eCLIP assay for ATP5J2-PTCD1 is not avaliable on ENCORE database.





24 proteins are bound to ATP5J2-PTCD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79906373299063785-5'-UTR,CDS,intron-Distal,intron-Proximal4.4003862.31742K562DDX3X
chr79906373399063789-5'-UTR,CDS,intron-Distal,intron-Proximal3.071536.20257K562APOBEC3C
chr79905770799057792-CDS,intron-Distal,intron-Proximal3.254728.15779K562ZNF800
chr79902148899021546-CDS,intron-Distal4.181614.95438K562YBX3
chr79905779699057817-CDS,intron-Distal,intron-Proximal3.5312043.60750K562DDX3X
chr79905770799057764-CDS,intron-Distal,intron-Proximal4.8650113.57407HepG2LARP4
chr79905771499057726-CDS,intron-Distal3.0867916.46602K562PABPC4
chr79905772899057818-CDS,intron-Distal,intron-Proximal3.4424824.56798K562UCHL5
chr79905770699057735-CDS,intron-Distal,intron-Proximal3.4931415.19420K562APOBEC3C
chr79905770799057715-CDS,intron-Distal,intron-Proximal3.8047813.40812K562UCHL5
chr79905770399057733-CDS,intron-Distal,intron-Proximal4.4454410.49819K562GRWD1
chr79903086399030942-CDS,intron-Distal,intron-Proximal5.7348210.44569K562AQR
chr79905770899057802-CDS,intron-Distal,intron-Proximal4.0621813.81950K562RPS3
chr79905771199057814-CDS,intron-Distal3.3541118.34271K562GEMIN5
chr79902666799026776-CDS,intron-Distal,intron-Proximal3.658075.73990HepG2PRPF8
chr79905773599057793-CDS,intron-Distal3.3990516.39473K562APOBEC3C
chr79906368299063757-5'-UTR,CDS,intron-Distal4.007319.61107HepG2PRPF8
chr79902237299022421-CDS,intron-Distal,intron-Proximal4.704035.35117HepG2PRPF8
chr79905771599057728-CDS,intron-Distal4.1933919.19286K562UCHL5
chr79905770799057727-CDS,intron-Distal,intron-Proximal3.1029511.72988K562DDX55
chr79905770999057817-CDS,intron-Distal,intron-Proximal3.435518.86044HepG2DDX55
chr79905770499057731-CDS,intron-Distal,intron-Proximal3.358344.50748HepG2GRWD1
chr79905772799057800-CDS,intron-Distal3.2222125.52637K562DDX55
chr79905780099057817-CDS,intron-Distal,intron-Proximal3.052119.55204K562DDX55
chr79905686099056886-CDS,intron-Distal3.4961611.30791K562APOBEC3C
chr79905684799056887-CDS,intron-Distal,intron-Proximal3.2033015.92709K562UCHL5
chr79905679299056857-CDS,intron-Distal,intron-Proximal3.2449514.14372K562APOBEC3C
chr79905678899056859-CDS,intron-Distal,intron-Proximal3.0408111.74223K562PABPC4
chr79905679499056853-CDS,intron-Distal,intron-Proximal4.2873315.34321HepG2LARP4
chr79905575999055820-3'-UTR,intron-Distal,intron-Proximal,polyA_site3.559383.48399HepG2CSTF2T
chr79905789499058044-intron-Distal,intron-Proximal3.620295.83959K562KHSRP
chr79905588999055979-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.799296.54919HepG2RPS3
chr79905583999055866-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.276634.48159HepG2LARP4
chr79905614099056207-intron-Distal3.267723.48391K562SMNDC1
chr79902138899021398-intron-Distal,intron-Proximal4.234825.97994K562AQR
chr79905827399058406-intron-Distal4.745696.87697K562NONO
chr79902129999021388-intron-Distal,intron-Proximal4.219398.29266K562AQR
chr79905581699055860-3'-UTR,5'-UTR,intron-Distal,intron-Proximal,polyA_site5.0702654.24944K562PABPC4
chr79905588399055932-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.1197013.65277K562YBX3
chr79905672399056792-CDS,intron-Distal,intron-Proximal3.280035.76569HepG2PRPF8
chr79905677399056855-CDS,intron-Distal,intron-Proximal3.7960035.25839K562RPS3
chr79902080099020959-intron-Distal4.378414.64592HepG2HNRNPM
chr79905593899055978-3'-UTR,5'-UTR,CDS,intron-Distal4.0468518.22619HepG2LARP4
chr79905676999056787-CDS,intron-Distal,intron-Proximal3.008476.06384K562APOBEC3C
chr79905610499056195-intron-Distal4.848086.66303HepG2SF3B4
chr79905586099055921-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.7150033.06350K562PABPC4
chr79905596799055979-CDS,intron-Distal,intron-Proximal3.4312613.14443K562IGF2BP2
chr79905678899056851-CDS,intron-Distal,intron-Proximal3.449075.15615HepG2RPS3
chr79905571799055826-3'-UTR,5'-UTR,intron-Distal,intron-Proximal,polyA_site3.523354.25110K562CSTF2T
chr79903064399030750-intron-Distal,intron-Proximal4.992115.65342K562AQR
chr79905588299055914-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.4034817.71572HepG2LARP4
chr79905686499056887-CDS,intron-Distal,intron-Proximal3.183545.07870K562GRWD1
chr79905677399056787-CDS,intron-Distal,intron-Proximal3.562229.59989HepG2LARP4
chr79905589199055985-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.1086124.04206K562RPS3
chr79905676999056779-CDS,intron-Distal,intron-Proximal3.009257.77399K562IGF2BP2
chr79905590299055941-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.5607482.00183K562IGF2BP2
chr79905686199056887-CDS,intron-Distal,intron-Proximal3.2173716.78587K562ZNF622
chr79903079599030901-intron-Distal,intron-Proximal4.119066.23016HepG2PRPF8
chr79905591499055938-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.1482410.48878HepG2LARP4
chr79905586699055929-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.515033.84718K562METAP2
chr79905586799055902-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.8418566.01882K562IGF2BP2
chr79905681099056887-CDS,intron-Distal,intron-Proximal3.8003010.40982K562ZNF800
chr79905676999056773-CDS,intron-Distal,intron-Proximal4.1049012.76766HepG2LARP4
chr79905613899056216-intron-Distal3.664684.51027K562BUD13
chr79905844799058493-intron-Distal3.597665.62040K562TIA1
chr79906368799063751-5'-UTR,CDS,intron-Distal4.549858.69247K562AQR
chr79905582399055858-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.349733.37451K562APOBEC3C
chr79905594199055967-3'-UTR,5'-UTR,CDS,intron-Distal4.0926922.18168K562IGF2BP2
chr79905586699055882-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.334979.64287HepG2LARP4
chr79905685399056886-CDS,intron-Distal,intron-Proximal5.335149.06009HepG2LARP4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATP5J2-PTCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATP5J2-PTCD1 is not available on ENCORE database.

  • 42 RBPs can affect the levels of ATP5J2-PTCD1.  








The Knockdown/knockout RNA-Seq assay for ATP5J2-PTCD1 is not available on ENCORE database.





42 RBPs can affect the gene expression of ATP5J2-PTCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATP5J2-PTCD1ENSG00000248919.3147.3713088.914000.728902.115401.64350HepG2AKAP1
ATP5J2-PTCD1ENSG00000248919.384.8671045.363700.903602.073501.41570HepG2CNOT7
ATP5J2-PTCD1ENSG00000248919.385.9919052.554800.710302.092601.51050HepG2DNAJC2
ATP5J2-PTCD1ENSG00000248919.333.4416077.53760-1.213302.197901.30130HepG2FTO
ATP5J2-PTCD1ENSG00000248919.3134.8912078.446600.781902.511401.85050HepG2FXR1
ATP5J2-PTCD1ENSG00000248919.3101.7609059.138500.782902.644602.05140HepG2HNRNPU
ATP5J2-PTCD1ENSG00000248919.3135.3723078.904200.778702.322901.74130HepG2MATR3
ATP5J2-PTCD1ENSG00000248919.339.4192085.40270-1.115402.577501.64650HepG2MTPAP
ATP5J2-PTCD1ENSG00000248919.332.4466074.24380-1.194202.606101.87850HepG2NSUN2
ATP5J2-PTCD1ENSG00000248919.3105.8638059.545200.830102.821102.21070HepG2PCBP1
ATP5J2-PTCD1ENSG00000248919.3105.2005060.590100.795902.517601.99170HepG2PTBP1
ATP5J2-PTCD1ENSG00000248919.3170.6082099.041300.784503.863103.18760HepG2PUM1
ATP5J2-PTCD1ENSG00000248919.3149.0593082.585800.851804.033703.31550HepG2PUS1
ATP5J2-PTCD1ENSG00000248919.3103.7090062.803300.723502.084801.53970HepG2RECQL
ATP5J2-PTCD1ENSG00000248919.383.0397046.285200.843202.104401.56130HepG2RPS19
ATP5J2-PTCD1ENSG00000248919.3148.2523088.042100.751702.625501.96860HepG2SF3A3
ATP5J2-PTCD1ENSG00000248919.346.7375092.20810-0.980302.329701.61560HepG2SNRNP70
ATP5J2-PTCD1ENSG00000248919.394.07430170.59010-0.858704.194703.61560HepG2SRFBP1
ATP5J2-PTCD1ENSG00000248919.3124.9755065.843300.924403.460502.94720HepG2SRSF1
ATP5J2-PTCD1ENSG00000248919.346.3389089.17720-0.944502.397301.47320HepG2SRSF3
ATP5J2-PTCD1ENSG00000248919.374.1325039.617900.903902.341901.34330HepG2STIP1
ATP5J2-PTCD1ENSG00000248919.3191.79030104.770000.872202.706202.08970HepG2SUCLG1
ATP5J2-PTCD1ENSG00000248919.3149.6263091.144500.715002.506101.67800HepG2TUFM
ATP5J2-PTCD1ENSG00000248919.3158.2276086.522800.870703.028802.37260HepG2U2AF1
ATP5J2-PTCD1ENSG00000248919.3165.6572075.383401.135806.278505.43600HepG2UTP3
ATP5J2-PTCD1ENSG00000248919.339.0610076.95800-0.978301.982501.39970HepG2ZC3H8
ATP5J2-PTCD1ENSG00000248919.3345.61570206.817200.740706.127305.21100K562DDX47
ATP5J2-PTCD1ENSG00000248919.3155.2563066.918501.214103.744302.82830K562EIF3G
ATP5J2-PTCD1ENSG00000248919.3197.35670101.163800.964005.267204.13510K562EIF4A3
ATP5J2-PTCD1ENSG00000248919.3263.91220105.204001.3268011.4504010.30530K562FXR1
ATP5J2-PTCD1ENSG00000248919.313.8195042.79480-1.630703.142202.38000K562G3BP2
ATP5J2-PTCD1ENSG00000248919.3115.8124058.187200.992903.252402.10690K562IGF2BP2
ATP5J2-PTCD1ENSG00000248919.3162.7861061.099501.413609.002907.43530K562MAGOH
ATP5J2-PTCD1ENSG00000248919.3126.6882060.967501.055104.709803.47320K562MATR3
ATP5J2-PTCD1ENSG00000248919.396.7750054.353800.832202.420701.50830K562PCBP2
ATP5J2-PTCD1ENSG00000248919.3143.63550216.12010-0.589402.319601.55850K562PCBP3
ATP5J2-PTCD1ENSG00000248919.3206.3513059.366001.7973015.9223014.39630K562PTBP1
ATP5J2-PTCD1ENSG00000248919.3132.0374056.896001.214405.904004.61750K562RBM22
ATP5J2-PTCD1ENSG00000248919.3138.9310059.880701.214105.969904.28160K562NELFE
ATP5J2-PTCD1ENSG00000248919.3231.54910136.748800.759703.127602.25630K562RPS19
ATP5J2-PTCD1ENSG00000248919.3153.1633058.204401.395807.480306.32660K562SRSF1
ATP5J2-PTCD1ENSG00000248919.396.9043054.984400.817402.511101.51800K562SRSF5
ATP5J2-PTCD1ENSG00000248919.3279.87810166.269600.751204.947003.84210K562SYNCRIP
ATP5J2-PTCD1ENSG00000248919.3158.3926058.893801.427208.147406.85370K562TARDBP
ATP5J2-PTCD1ENSG00000248919.3131.8544056.813101.214505.581604.35430K562TIA1
ATP5J2-PTCD1ENSG00000248919.3120.1657055.780901.107104.243502.84320K562TRA2A
ATP5J2-PTCD1ENSG00000248919.3239.89430173.378800.468402.414601.62030K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATP5J2-PTCD1 is not available on ENCORE database.





22 RBPs can affect the splicing of ATP5J2-PTCD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.066000.003040.09421shorterK562PUS1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.077000.000770.01495shorterK562AQR
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.127000.000000.00000shorterHepG2TAF15
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.103000.000100.01565longerHepG2SRSF9
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.146000.000020.01240shorterHepG2DDX59
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.117000.000040.00974longerHepG2TIAL1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.190000.000000.00089longerHepG2SFPQ
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.096000.000180.01383longerHepG2SRSF1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.200000.000000.00000shorterK562HNRNPC
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.097000.000040.00755longerK562PTBP1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.170000.000000.00000longerHepG2SF3A3
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.101000.000000.00187shorterHepG2AKAP1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.123000.000010.00344longerHepG2PCBP2
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.098000.000000.00000longerK562FXR2
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.115000.000000.00024longerK562FXR1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.096000.000250.03267longerK562EFTUD2
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.112000.000000.00131shorterK562FMR1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.128000.000000.00089longerHepG2MATR3
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.114000.000070.07039longerHepG2GRSF1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.086000.000090.01334shorterK562UTP18
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.107000.000040.01444shorterHepG2HNRNPC
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063785990637519906378599057601990578160.132000.000000.00001longerK562SRSF1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-9906373399063787990637519906378799057708990578160.133000.000010.00639longerHepG2EFTUD2
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.134000.000000.00000shorterK562SF3B1
A5SSATP5J2-PTCD1ENSG00000248919.3chr7-990637339906378799063751990637879905770899057816-0.096000.000270.02879shorterHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATP5J2-PTCD1 is not avaliable on ENCORE database.