VPS29

General Information

Gene Name       : VPS29
Gene ID             : ENSG00000111237.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: VPS29)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VPS29ENSG00000111237.18199.83121.13160.48ENCSR000AEF
HepG2VPS29ENSG00000111237.1862.31120.2091.25ENCSR985KAT
K562VPS29ENSG00000111237.18162.50183.73173.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VPS29 is not avaliable on ENCORE database.



Proteins bound to RNA
  • VPS29 RNA is bound by 15 proteins.  







eCLIP assay for VPS29 is not avaliable on ENCORE database.





15 proteins are bound to VPS29 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12110929495110929550-3'-UTR,intron-Distal,intron-Proximal4.219994.73972K562PUM2
chr12110933858110934010-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.7157933.36830K562DDX3X
chr12110933812110933874-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.033763.40321HepG2GRWD1
chr12110930978110931042-3'-UTR,CDS,intron-Distal,intron-Proximal3.761603.31827HepG2GRWD1
chr12110939744110939862-5'-UTR,CDS,intron-Distal5.182498.52745HepG2AQR
chr12110936642110936715-5'-UTR,intron-Distal,intron-Proximal3.821478.74065K562SF3B4
chr12110937215110937272-5'-UTR,intron-Distal,intron-Proximal4.0102910.78806HepG2QKI
chr12110936645110936715-5'-UTR,intron-Distal,intron-Proximal3.056884.81700HepG2U2AF2
chr12110936596110936693-5'-UTR,intron-Distal,intron-Proximal3.542723.65452K562BUD13
chr12110936645110936698-5'-UTR,intron-Distal,intron-Proximal4.511285.54528HepG2QKI
chr12110937212110937269-5'-UTR,intron-Distal,intron-Proximal5.321666.83278K562PRPF8
chr12110937269110937341-5'-UTR,CDS,intron-Distal,intron-Proximal3.988727.40171K562PRPF8
chr12110937207110937292-5'-UTR,intron-Distal,intron-Proximal3.582314.83282K562EFTUD2
chr12110937272110937322-5'-UTR,intron-Distal,intron-Proximal4.4495110.53796HepG2QKI
chr12110929848110929916-CDS,intron-Distal3.212513.32027K562SMNDC1
chr12110929847110929923-CDS,intron-Distal4.9794315.62794K562LIN28B
chr12110937000110937058-intron-Distal4.182278.08894HepG2QKI
chr12110934200110934389-intron-Distal3.120435.88399K562KHSRP
chr12110939697110939809-intron-Distal3.083183.29499HepG2PRPF4
chr12110939835110939854-intron-Distal4.181374.98250K562AQR
chr12110937013110937049-intron-Distal4.455413.45799HepG2U2AF2
chr12110936544110936619-intron-Distal,intron-Proximal3.469394.23459K562PRPF8
chr12110936954110937000-intron-Distal3.648713.35377HepG2QKI
chr12110939759110939827-intron-Distal3.049824.55245HepG2RBM22
chr12110939810110939835-intron-Distal4.670896.48405K562AQR
chr12110939722110939803-intron-Distal4.178466.75344HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VPS29 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VPS29 is not available on ENCORE database.

  • 70 RBPs can affect the levels of VPS29.  








The Knockdown/knockout RNA-Seq assay for VPS29 is not available on ENCORE database.





70 RBPs can affect the gene expression of VPS29 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VPS29ENSG00000111237.14686.709201027.79390-0.581804.953603.91680HepG2ASCC1
VPS29ENSG00000111237.14655.127501183.24710-0.852908.817107.82160HepG2BOP1
VPS29ENSG00000111237.14787.043101086.24400-0.464803.005002.29210HepG2CPSF6
VPS29ENSG00000111237.14667.073401021.99780-0.615504.788903.99580HepG2DDX6
VPS29ENSG00000111237.14642.24330982.65930-0.613605.218604.41950HepG2EIF2S1
VPS29ENSG00000111237.14813.178301086.04500-0.417402.516301.90560HepG2EIF4A3
VPS29ENSG00000111237.14673.671601057.24360-0.650204.426103.56690HepG2EIF4B
VPS29ENSG00000111237.14891.113401123.91780-0.334902.391501.63180HepG2EIF4G2
VPS29ENSG00000111237.14812.039401095.49860-0.432003.100402.36810HepG2FXR1
VPS29ENSG00000111237.14612.769101016.38040-0.730006.935305.90150HepG2G3BP1
VPS29ENSG00000111237.14314.04000493.44700-0.651904.915603.72010HepG2GEMIN5
VPS29ENSG00000111237.14744.904501028.83920-0.465903.700302.90160HepG2HNRNPK
VPS29ENSG00000111237.14694.60450857.27730-0.303602.005701.38190HepG2IGF2BP1
VPS29ENSG00000111237.14668.387101033.18000-0.628305.684404.74990HepG2IGF2BP2
VPS29ENSG00000111237.14692.664901039.10620-0.585103.388602.26310HepG2KHSRP
VPS29ENSG00000111237.14778.964701095.87990-0.492503.743302.97980HepG2MAGOH
VPS29ENSG00000111237.14862.869701102.05820-0.353001.970401.43370HepG2MATR3
VPS29ENSG00000111237.141045.65090760.237200.459804.485103.47250HepG2MSI2
VPS29ENSG00000111237.14989.962201179.31790-0.252502.091701.42660HepG2NOL12
VPS29ENSG00000111237.141405.504501041.939700.431703.654302.79480HepG2NSUN2
VPS29ENSG00000111237.14679.495201004.77310-0.564304.598803.67960HepG2PABPC4
VPS29ENSG00000111237.14652.22520901.90370-0.467603.967903.26790HepG2PCBP1
VPS29ENSG00000111237.14871.185101125.73740-0.369803.145802.51660HepG2PUF60
VPS29ENSG00000111237.14858.965401194.99100-0.476308.454207.53580HepG2PUM1
VPS29ENSG00000111237.14834.22330993.93460-0.252701.861701.33410HepG2QKI
VPS29ENSG00000111237.141536.803801168.946400.394604.450903.39320HepG2RBM15
VPS29ENSG00000111237.14749.945901021.32960-0.445605.255804.54850HepG2NELFE
VPS29ENSG00000111237.14806.94680951.20050-0.237301.904901.38010HepG2RECQL
VPS29ENSG00000111237.14691.33840955.48030-0.466805.629504.83650HepG2SF3B4
VPS29ENSG00000111237.14872.248201079.34720-0.307303.593902.81090HepG2SLBP
VPS29ENSG00000111237.141442.354901150.226100.326404.528303.93260HepG2SRFBP1
VPS29ENSG00000111237.14791.234201111.46700-0.490307.033006.09940HepG2SRSF5
VPS29ENSG00000111237.14698.39290855.31000-0.292402.351401.70600HepG2SRSF7
VPS29ENSG00000111237.14575.47300811.34480-0.495606.286805.51450HepG2SRSF9
VPS29ENSG00000111237.141227.10620998.720100.297003.463502.90420HepG2SSB
VPS29ENSG00000111237.141037.524401264.07390-0.284903.455302.77520HepG2SUCLG1
VPS29ENSG00000111237.14651.44380896.37310-0.460505.181804.45440HepG2TAF15
VPS29ENSG00000111237.14649.07050823.68660-0.343702.616501.80280HepG2TIA1
VPS29ENSG00000111237.14798.420701099.75040-0.462004.628203.46500HepG2TUFM
VPS29ENSG00000111237.141114.72970803.464700.472303.888503.14800HepG2U2AF1
VPS29ENSG00000111237.14716.85930852.02930-0.249202.096501.47430HepG2UPF1
VPS29ENSG00000111237.14958.64890726.014600.400903.747002.98520HepG2ZC3H8
VPS29ENSG00000111237.141475.17500937.073600.6546016.7140015.65280HepG2ZNF622
VPS29ENSG00000111237.141227.276401860.39160-0.6001012.4715011.36050K562AGGF1
VPS29ENSG00000111237.141411.088801935.78470-0.456103.280502.56730K562AKAP8L
VPS29ENSG00000111237.141137.309402343.80700-1.0432016.0782014.82200K562AQR
VPS29ENSG00000111237.141015.642701298.69930-0.354704.508103.26650K562BCLAF1
VPS29ENSG00000111237.141218.214101982.50830-0.702602.295701.50810K562BOP1
VPS29ENSG00000111237.141187.905701933.88900-0.703103.663101.97780K562BUD13
VPS29ENSG00000111237.141931.818702416.81230-0.323104.335802.93070K562CPEB4
VPS29ENSG00000111237.14795.39220985.25700-0.308802.738201.68680K562CSTF2
VPS29ENSG00000111237.14707.97590899.18640-0.344902.637801.62100K562DDX3X
VPS29ENSG00000111237.142902.916902500.857100.215002.709102.06360K562DDX47
VPS29ENSG00000111237.14722.132001005.98730-0.478303.633902.57560K562EFTUD2
VPS29ENSG00000111237.14730.26900939.42100-0.363302.705601.89380K562EIF4A3
VPS29ENSG00000111237.14661.57880845.99310-0.354703.141801.89180K562EIF4B
VPS29ENSG00000111237.141322.17370976.957200.436405.707504.88370K562FXR1
VPS29ENSG00000111237.141415.175801075.355800.396102.316601.67740K562G3BP2
VPS29ENSG00000111237.14744.148101008.55080-0.438602.929601.46040K562GEMIN5
VPS29ENSG00000111237.141384.916201649.40810-0.252102.404701.34960K562GLRX3
VPS29ENSG00000111237.141026.588601499.65190-0.546803.742103.06050K562HNRNPC
VPS29ENSG00000111237.143743.652402705.937500.468204.525303.51250K562HSPD1
VPS29ENSG00000111237.141428.469801734.12110-0.279703.609402.69430K562MTPAP
VPS29ENSG00000111237.141509.253801926.85640-0.352407.149506.03110K562NSUN2
VPS29ENSG00000111237.141166.065302204.81740-0.919004.386903.06500K562PABPN1
VPS29ENSG00000111237.141467.793801920.03320-0.387503.122102.55120K562PUS1
VPS29ENSG00000111237.141389.050701870.56270-0.429406.070205.21790K562RBM15
VPS29ENSG00000111237.14868.891501352.17140-0.638007.789006.28490K562RBM22
VPS29ENSG00000111237.141258.18750997.289100.335202.204901.47900K562RPS19
VPS29ENSG00000111237.14794.157401118.95370-0.494704.547003.44010K562SF3B4
VPS29ENSG00000111237.141437.569202459.98760-0.775002.749701.45510K562SFPQ
VPS29ENSG00000111237.141490.972401947.78600-0.385607.210405.77500K562SRPK2
VPS29ENSG00000111237.141114.667401382.28220-0.310402.640301.94800K562SRSF1
VPS29ENSG00000111237.141031.898601305.40310-0.339202.576801.56950K562SRSF5
VPS29ENSG00000111237.14704.21080948.05800-0.429002.552601.58130K562SUPV3L1
VPS29ENSG00000111237.141725.776101242.308300.474106.138004.90680K562SYNCRIP
VPS29ENSG00000111237.141056.974901349.49040-0.352503.325502.41690K562TIA1
VPS29ENSG00000111237.141039.038901324.13110-0.349802.716101.63610K562TRA2A
VPS29ENSG00000111237.141698.898102043.07930-0.266103.482902.68270K562UPF1
VPS29ENSG00000111237.141306.261901946.44450-0.575402.779201.48270K562UTP18
VPS29ENSG00000111237.141951.749402489.53380-0.351102.631801.46260K562UTP3
VPS29ENSG00000111237.141940.397202640.63210-0.444504.749603.57280K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VPS29 is not available on ENCORE database.





27 RBPs can affect the splicing of VPS29 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVPS29ENSG00000111237.14chr12-1109372611109373511109338161109340081109398531109399160.113000.001880.03484includedK562SRSF1
SEVPS29ENSG00000111237.14chr12-110936624110936664110933816110934008110937261110937351-0.375000.003350.05514excludedK562SRSF1
SEVPS29ENSG00000111237.14chr12-110937339110937351110933816110934008110939853110939904-0.172000.000130.00390excludedK562SF3B4
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.245000.000000.00000includedHepG2RBM22
SEVPS29ENSG00000111237.14chr12-1109372611109373511109338161109340081109398531109399160.440000.000000.00000includedHepG2U2AF1
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.242000.000000.00003includedHepG2HNRNPK
SEVPS29ENSG00000111237.14chr12-1109372611109373511109338161109340081109398531109399160.210000.000040.04271includedHepG2TRA2A
SEVPS29ENSG00000111237.14chr12-1109372611109373511109338161109340081109398531109399160.147000.000060.00905includedHepG2QKI
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.173000.000000.00089includedHepG2AKAP1
SEVPS29ENSG00000111237.14chr12-1109392211109393641109373391109373511109398531109398970.238000.000450.00620includedK562AQR
SEVPS29ENSG00000111237.14chr12-110937339110937351110933816110934008110939853110939904-0.219000.000020.00035excludedK562AQR
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.309000.000000.00000includedK562FXR1
SEVPS29ENSG00000111237.14chr12-110936624110936664110933816110934008110937339110937351-0.150000.000000.00003excludedK562FXR1
SEVPS29ENSG00000111237.14chr12-110937339110937351110933816110934008110939853110939904-0.189000.001070.08475excludedHepG2SRSF7
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.256000.000000.00000includedHepG2DDX3X
SEVPS29ENSG00000111237.14chr12-110933816110933899110930800110931036110939853110939922-0.059000.000020.00060excludedK562PUS1
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.252000.000000.00003includedHepG2NCBP2
SEVPS29ENSG00000111237.14chr12-1109372611109373511109338161109340081109398531109399160.366000.000180.01247includedHepG2SFPQ
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.348000.000000.00000includedHepG2PTBP1
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.201000.000000.00004includedK562APOBEC3C
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.351000.000000.00000includedK562U2AF1
SEVPS29ENSG00000111237.14chr12-1109372611109373511109338161109340081109398531109399160.221000.000530.06914includedK562HNRNPM
SEVPS29ENSG00000111237.14chr12-110937261110937351110933816110934008110939853110939916-0.196000.000640.09890excludedK562SBDS
SEVPS29ENSG00000111237.14chr12-110930800110931036110928901110929927110933816110933899-0.054000.000030.00132excludedHepG2SRSF1
SEVPS29ENSG00000111237.14chr12-110937339110937351110933816110934008110939853110939904-0.161000.000030.00243excludedHepG2PCBP1
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.131000.001260.04508includedK562TARDBP
SEVPS29ENSG00000111237.14chr12-110930800110931036110928901110929927110933816110934008-0.058000.000000.00001excludedK562TARDBP
SEVPS29ENSG00000111237.14chr12-110937339110937351110933816110934008110939853110939904-0.198000.000060.00397excludedK562HNRNPU
SEVPS29ENSG00000111237.14chr12-110937261110937351110933816110934008110939853110939916-0.159000.000100.02047excludedK562ZC3H8
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.293000.000000.00000includedK562HNRNPK
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.226000.000000.00045includedK562EIF3G
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.144000.000540.09988includedK562SERBP1
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.413000.000000.00000includedK562PTBP1
SEVPS29ENSG00000111237.14chr12-1109373391109373511109338161109340081109398531109399040.182000.003010.04672includedK562HNRNPC
A5SSVPS29ENSG00000111237.14chr12-110937261110937351110937339110937351110933816110934008-0.137000.001940.06378shorterHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VPS29 is not avaliable on ENCORE database.