PHF16

General Information

Gene Name       : PHF16
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PHF16)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PHF16 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PHF16 RNA is bound by 13 proteins.  







eCLIP assay for PHF16 is not avaliable on ENCORE database.





13 proteins are bound to PHF16 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4691997346920034+3'-UTR4.603114.46422K562UPF1
chrX4677202946772105+5'-UTR,intron-Distal3.324967.57459HepG2NKRF
chrX4677185746771918+5'-UTR,intron-Distal,intron-Proximal3.572005.32184HepG2PRPF4
chrX4677201046772101+5'-UTR,intron-Distal4.228828.40843HepG2PRPF4
chrX4677201946772093+5'-UTR,intron-Distal4.648715.84876HepG2GTF2F1
chrX4677200946772149+5'-UTR,intron-Distal3.089613.04054K562GTF2F1
chrX4677217846772250+5'-UTR,intron-Distal,intron-Proximal4.721047.19649HepG2CSTF2T
chrX4689314546893191+CDS,intron-Proximal4.364345.64683K562YBX3
chrX4688744446887515+CDS,intron-Proximal3.372823.28366HepG2BCLAF1
chrX4679358246793637+intron-Distal3.656696.03310HepG2HNRNPC
chrX4677242446772469+intron-Distal,intron-Proximal4.040313.94684HepG2CSTF2T
chrX4677718846777365+intron-Distal4.950824.40618K562PTBP1
chrX4678911346789238+intron-Distal3.388413.54383HepG2HNRNPL
chrX4680118246801224+intron-Distal3.903793.01456K562EXOSC5
chrX4677722946777369+intron-Distal5.9788312.28789HepG2PTBP1
chrX4677329146773369+intron-Distal3.293455.42728HepG2HNRNPM
chrX4680311246803167+intron-Distal4.341033.30696K562EXOSC5
chrX4678224046782311+intron-Distal3.946833.16028HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PHF16 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PHF16 is not available on ENCORE database.

  • 55 RBPs can affect the levels of PHF16.  








The Knockdown/knockout RNA-Seq assay for PHF16 is not available on ENCORE database.





55 RBPs can affect the gene expression of PHF16 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PHF16ENSG00000102221.9344.83540529.16680-0.617806.799905.93260HepG2ACO1
PHF16ENSG00000102221.9500.34970814.63660-0.703205.372704.66110HepG2AKAP1
PHF16ENSG00000102221.9343.51280531.60630-0.630006.643105.50790HepG2AKAP8L
PHF16ENSG00000102221.9276.13150547.39910-0.987204.647102.39990HepG2APOBEC3C
PHF16ENSG00000102221.9520.27410899.42540-0.7897013.4799012.16590HepG2AUH
PHF16ENSG00000102221.9302.99470487.96230-0.687504.202803.04840HepG2BCCIP
PHF16ENSG00000102221.9234.58630423.99420-0.853905.918704.65980HepG2BCLAF1
PHF16ENSG00000102221.9725.13120556.054100.382902.462901.89440HepG2BOP1
PHF16ENSG00000102221.9287.34870586.19250-1.028607.203505.97270HepG2CNOT7
PHF16ENSG00000102221.9320.47110510.47600-0.671605.042004.13830HepG2CPSF6
PHF16ENSG00000102221.9544.64050731.13390-0.424804.797003.86070HepG2DAZAP1
PHF16ENSG00000102221.9367.71350491.50070-0.418602.511701.86230HepG2DDX21
PHF16ENSG00000102221.9553.06640780.33660-0.496603.389402.70600HepG2DDX3X
PHF16ENSG00000102221.9314.49360479.77190-0.609303.441702.59000HepG2DDX55
PHF16ENSG00000102221.9379.83580554.91930-0.546903.902902.71000HepG2DDX5
PHF16ENSG00000102221.9377.82320670.38100-0.827306.743505.81310HepG2DDX6
PHF16ENSG00000102221.9332.74570466.11340-0.486303.729902.92080HepG2DNAJC21
PHF16ENSG00000102221.9318.12810462.03340-0.538405.241604.38910HepG2DNAJC2
PHF16ENSG00000102221.9255.34490644.39820-1.3355016.5263015.16040HepG2EIF2S1
PHF16ENSG00000102221.9296.59330458.22190-0.627604.600903.11370HepG2EIF2S2
PHF16ENSG00000102221.9919.56930721.287400.350303.383002.47280HepG2EIF4G1
PHF16ENSG00000102221.9855.049001032.64710-0.272302.255401.70340HepG2ETF1
PHF16ENSG00000102221.9513.95350666.53560-0.375002.014401.44340HepG2G3BP1
PHF16ENSG00000102221.9293.24250470.57930-0.682305.193704.34690HepG2HNRNPA1
PHF16ENSG00000102221.9453.07580666.01450-0.555806.906105.88440HepG2HNRNPL
PHF16ENSG00000102221.9427.28700519.98280-0.283301.817901.31690HepG2HNRNPU
PHF16ENSG00000102221.9391.11520571.43930-0.547002.774901.45350HepG2ILF3
PHF16ENSG00000102221.9553.66500718.82030-0.376602.133101.55460HepG2MAGOH
PHF16ENSG00000102221.9335.15890722.83030-1.1088011.6770010.44450HepG2MATR3
PHF16ENSG00000102221.9535.94030724.98960-0.435903.911703.00500HepG2NOL12
PHF16ENSG00000102221.9282.44050535.72090-0.923505.525204.24020HepG2PABPC1
PHF16ENSG00000102221.9241.17460658.83220-1.4498019.4690017.59660HepG2PABPC4
PHF16ENSG00000102221.9523.64330734.64340-0.488505.984105.18000HepG2PUM1
PHF16ENSG00000102221.9542.69360863.10470-0.669408.904208.09610HepG2RBM22
PHF16ENSG00000102221.9343.74800463.06060-0.429803.318902.62440HepG2SAFB2
PHF16ENSG00000102221.9367.34130539.99510-0.555805.970105.08120HepG2SMN1
PHF16ENSG00000102221.9405.54800554.24990-0.450702.224301.37500HepG2SMNDC1
PHF16ENSG00000102221.9964.03340709.070100.443105.111304.51970HepG2SRSF1
PHF16ENSG00000102221.9335.36370511.82030-0.609903.692802.40510HepG2STIP1
PHF16ENSG00000102221.9503.89520637.34510-0.339002.452101.92040HepG2TAF15
PHF16ENSG00000102221.9386.86960538.31260-0.476603.010202.25820HepG2TARDBP
PHF16ENSG00000102221.9342.30430509.78000-0.574605.665704.91140HepG2TRIM56
PHF16ENSG00000102221.9245.71380564.13060-1.1991020.7938019.22730HepG2UPF1
PHF16ENSG00000102221.9337.82830527.06150-0.641703.806602.51510HepG2XPO5
PHF16ENSG00000102221.9431.20060598.17490-0.472202.320601.35180HepG2XRCC6
PHF16ENSG00000102221.9351.03710470.14520-0.421502.050401.41860HepG2XRN2
PHF16ENSG00000102221.9273.38860620.43480-1.1823023.7727022.56360HepG2ZNF622
PHF16ENSG00000102221.9370.34330476.88870-0.364801.956901.40480K562AKAP8L
PHF16ENSG00000102221.9346.81740595.21790-0.779206.797704.74960K562APOBEC3C
PHF16ENSG00000102221.9706.47850502.540600.491305.221304.36510K562DDX47
PHF16ENSG00000102221.9288.73600395.02850-0.452202.955201.69770K562EIF2S1
PHF16ENSG00000102221.9290.13080164.489400.818603.411702.28540K562EIF3A
PHF16ENSG00000102221.9223.82470338.35790-0.596202.567401.46910K562EIF4B
PHF16ENSG00000102221.9327.25660454.14320-0.472703.249902.24200K562MATR3
PHF16ENSG00000102221.9276.04940412.71730-0.580203.408401.37880K562PABPC4
PHF16ENSG00000102221.9345.34630442.11790-0.356402.074401.48400K562PTBP1
PHF16ENSG00000102221.9361.02260472.96620-0.389601.962101.48990K562PUS1
PHF16ENSG00000102221.9461.14600320.429600.525102.890502.05390K562RPS19
PHF16ENSG00000102221.9339.08120438.65670-0.371501.904401.31000K562TARDBP
PHF16ENSG00000102221.9491.40560391.048000.329502.289301.51270K562WDR43
PHF16ENSG00000102221.9446.81160619.94580-0.472503.514502.05050K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PHF16 is not available on ENCORE database.






No RBPs affect the alternative splcing events of PHF16 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PHF16 is not avaliable on ENCORE database.