SLIRP

General Information

Gene Name       : SLIRP
Gene ID             : ENSG00000119705.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLIRP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLIRPENSG00000119705.9249.46248.19248.82ENCSR000AEF
HepG2SLIRPENSG00000119705.9211.26334.00272.63ENCSR985KAT
K562SLIRPENSG00000119705.9313.42330.31321.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLIRP is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLIRP RNA is bound by 12 proteins.  







eCLIP assay for SLIRP is not avaliable on ENCORE database.





12 proteins are bound to SLIRP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr147818214078182223+3'-UTR,CDS,intron-Distal,intron-Proximal3.193853.54074K562RBM15
chr147818213778182205+3'-UTR,CDS,intron-Distal3.811754.80893K562APOBEC3C
chr147818215578182200+3'-UTR,CDS,intron-Distal3.330846.46594HepG2LARP4
chr147818220078182223+3'-UTR,CDS,intron-Distal,intron-Proximal3.184225.34552HepG2LARP4
chr147818384278183905+3'-UTR,CDS,intron-Distal,intron-Proximal3.358937.27385K562GRWD1
chr147818384178183892+3'-UTR,CDS,intron-Distal,intron-Proximal3.9455911.19385HepG2LARP4
chr147818383878183841+3'-UTR,CDS,intron-Distal,intron-Proximal3.779417.47998HepG2LARP4
chr147818384178183904+3'-UTR,CDS,intron-Distal,intron-Proximal3.453477.38941HepG2GRWD1
chr147818389278183926+3'-UTR,CDS,intron-Distal4.271963.15159HepG2LARP4
chr147818212478182204+3'-UTR,CDS,intron-Distal3.3914310.33026HepG2GRWD1
chr147817444478174505+5'-UTR,CDS3.9096112.51175HepG2NCBP2
chr147817717978177196+5'-UTR,CDS,intron-Proximal4.4638116.57604HepG2GRWD1
chr147817444478174497+5'-UTR,CDS5.2436453.17973K562DDX3X
chr147817717878177227+5'-UTR,CDS,intron-Proximal3.070133.18670K562SRSF7
chr147817718078177215+5'-UTR,CDS,intron-Proximal4.044274.00952K562ZNF800
chr147817445178174546+5'-UTR,CDS4.7443620.46762HepG2GRWD1
chr147817445278174554+5'-UTR,CDS,intron-Proximal3.638843.68346K562PUM1
chr147817444678174503+5'-UTR,CDS3.208793.92818HepG2DDX3X
chr147817717978177241+5'-UTR,CDS,intron-Proximal3.759153.47885K562LIN28B
chr147817719678177237+5'-UTR,CDS,intron-Proximal3.9063814.15976HepG2GRWD1
chr147817444178174503+5'-UTR,CDS6.064726.70843K562RPS3
chr147817717878177230+5'-UTR,CDS,intron-Proximal3.177227.56719HepG2LARP4
chr147817451178174552+CDS,intron-Proximal3.123474.25476K562APOBEC3C
chr147817449778174523+CDS3.4080524.47417K562DDX3X
chr147817450178174551+CDS3.381707.59810HepG2LARP4
chr147817450078174553+CDS,intron-Proximal4.375425.98894K562ZNF800
chr147817454678174552+CDS,intron-Proximal4.9442719.89300HepG2GRWD1
chr147818396078184018+intron-Distal3.600345.55382HepG2CSTF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLIRP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLIRP is not available on ENCORE database.

  • 77 RBPs can affect the levels of SLIRP.  








The Knockdown/knockout RNA-Seq assay for SLIRP is not available on ENCORE database.





77 RBPs can affect the gene expression of SLIRP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLIRPENSG00000119705.5653.12780523.013200.320402.739302.07660HepG2CKAP4
SLIRPENSG00000119705.5609.96800469.444100.377702.928701.88090HepG2YBX3
SLIRPENSG00000119705.5605.20650866.33400-0.517503.455902.77330HepG2DDX6
SLIRPENSG00000119705.5599.81050832.73540-0.473403.229102.59070HepG2EIF2S1
SLIRPENSG00000119705.5690.19250920.22570-0.415002.527001.91520HepG2EIF4A3
SLIRPENSG00000119705.5778.41880981.81020-0.334902.115101.39660HepG2EIF4G2
SLIRPENSG00000119705.5851.009001175.88300-0.466506.157705.32100HepG2ETF1
SLIRPENSG00000119705.5722.60630511.190100.499204.305403.26490HepG2EWSR1
SLIRPENSG00000119705.5372.99990540.41710-0.534903.735402.54760HepG2GNB2L1
SLIRPENSG00000119705.5301.21990514.79370-0.773202.681402.04960HepG2GPKOW
SLIRPENSG00000119705.5558.57870699.05340-0.323602.617501.91990HepG2HNRNPF
SLIRPENSG00000119705.5774.57200946.29660-0.288902.847602.16590HepG2HNRNPL
SLIRPENSG00000119705.5601.92550928.92940-0.626005.297004.39590HepG2MAGOH
SLIRPENSG00000119705.5768.933701030.12280-0.421904.277803.33000HepG2NOL12
SLIRPENSG00000119705.5308.33170435.58380-0.498502.736201.99180HepG2NSUN2
SLIRPENSG00000119705.5293.21150425.13650-0.536002.107101.34860HepG2PABPC1
SLIRPENSG00000119705.5527.34080851.38000-0.691106.138105.07450HepG2PABPC4
SLIRPENSG00000119705.5617.89620833.71190-0.432204.493503.83340HepG2PTBP1
SLIRPENSG00000119705.5766.22770983.35600-0.359902.699002.10920HepG2PUF60
SLIRPENSG00000119705.5755.614201043.11940-0.465204.750603.88380HepG2PUM2
SLIRPENSG00000119705.5660.75710927.84130-0.489805.759405.02370HepG2NELFE
SLIRPENSG00000119705.5569.87450864.15810-0.600708.070207.10000HepG2RECQL
SLIRPENSG00000119705.5456.26340942.45590-1.046603.272501.76830HepG2SF1
SLIRPENSG00000119705.5592.20060868.00160-0.551606.971306.09990HepG2SF3B4
SLIRPENSG00000119705.5652.25330942.91800-0.531707.815006.72680HepG2SLBP
SLIRPENSG00000119705.5384.56460542.64460-0.496802.543701.62700HepG2SMNDC1
SLIRPENSG00000119705.5843.983101110.05830-0.395305.206004.57840HepG2SRFBP1
SLIRPENSG00000119705.5732.72690970.94000-0.406104.535903.76810HepG2SRSF5
SLIRPENSG00000119705.5490.85060737.08400-0.586507.736106.89830HepG2SRSF9
SLIRPENSG00000119705.5738.15490963.79190-0.384804.334303.72250HepG2SSB
SLIRPENSG00000119705.5900.549101104.20990-0.294103.096202.44550HepG2SUCLG1
SLIRPENSG00000119705.5450.26400684.11200-0.603503.433302.68960HepG2SUPV3L1
SLIRPENSG00000119705.5577.04780814.35340-0.497005.237604.50750HepG2TAF15
SLIRPENSG00000119705.5559.93820748.27980-0.418303.463202.53210HepG2TIA1
SLIRPENSG00000119705.5707.09790960.72330-0.442203.868902.81520HepG2TUFM
SLIRPENSG00000119705.5417.43210553.04370-0.405902.099001.54400HepG2U2AF1
SLIRPENSG00000119705.5525.47900979.92960-0.899002.531401.59030HepG2U2AF2
SLIRPENSG00000119705.5787.441801016.92770-0.369002.157901.42390HepG2UBE2L3
SLIRPENSG00000119705.5601.32710474.245500.342402.562401.54830HepG2UTP18
SLIRPENSG00000119705.5886.48510445.446100.9927020.1677018.77210HepG2UTP3
SLIRPENSG00000119705.5327.42920414.66310-0.340802.174301.56830HepG2ZC3H8
SLIRPENSG00000119705.5932.777801478.31480-0.664304.946404.20260K562AQR
SLIRPENSG00000119705.5747.62060938.02880-0.327303.373302.30820K562BCLAF1
SLIRPENSG00000119705.5499.66660841.57330-0.752103.816902.79280K562BOP1
SLIRPENSG00000119705.5715.19050962.83560-0.429002.788301.35140K562CKAP4
SLIRPENSG00000119705.5740.977701235.70330-0.737804.622603.20720K562CNOT7
SLIRPENSG00000119705.5450.99910894.87630-0.988609.782308.29090K562CPSF6
SLIRPENSG00000119705.5964.37980752.290300.358203.169502.22360K562DKC1
SLIRPENSG00000119705.5574.81880743.96590-0.372102.134601.33180K562EFTUD2
SLIRPENSG00000119705.5778.441101177.19280-0.596709.368208.16330K562EIF2S2
SLIRPENSG00000119705.51400.474001682.85650-0.265002.414901.53350K562EIF4G2
SLIRPENSG00000119705.5568.15770910.43340-0.680306.106104.82340K562FMR1
SLIRPENSG00000119705.5440.83770771.63880-0.807707.783006.16820K562FTO
SLIRPENSG00000119705.51006.41900612.009900.717506.662305.78140K562FXR1
SLIRPENSG00000119705.5546.50480745.86380-0.448702.761701.34470K562GEMIN5
SLIRPENSG00000119705.5466.00660854.42050-0.874607.845106.50220K562GPKOW
SLIRPENSG00000119705.5767.477201156.28070-0.591303.435601.66010K562HNRNPAB
SLIRPENSG00000119705.5402.01740818.04690-1.0249014.7493013.45560K562HNRNPC
SLIRPENSG00000119705.5569.64170730.53630-0.358902.388901.34120K562HNRNPF
SLIRPENSG00000119705.51522.91480801.393700.926207.542805.88200K562HNRNPM
SLIRPENSG00000119705.5728.817901131.24000-0.634309.586507.93760K562HNRNPU
SLIRPENSG00000119705.5731.625001127.49000-0.623903.212801.66570K562ILF2
SLIRPENSG00000119705.5309.22930459.53760-0.571503.689201.97550K562KHDRBS1
SLIRPENSG00000119705.5489.40810729.47970-0.575803.455302.39800K562KRR1
SLIRPENSG00000119705.5534.01060833.99540-0.643203.561202.56080K562METAP2
SLIRPENSG00000119705.5877.01920582.519200.590202.711201.83840K562NAA15
SLIRPENSG00000119705.5675.30230925.50970-0.454706.445305.36980K562NSUN2
SLIRPENSG00000119705.5833.925501187.14590-0.509502.481001.32770K562PABPC1
SLIRPENSG00000119705.5498.23690792.08160-0.668805.690604.49190K562PCBP3
SLIRPENSG00000119705.5452.51590607.53460-0.425003.257202.38350K562POLR2G
SLIRPENSG00000119705.5970.52080723.961500.422703.192002.38600K562PRPF8
SLIRPENSG00000119705.51170.13430693.350700.754908.423507.52330K562PUS1
SLIRPENSG00000119705.5877.26860675.447900.377103.060402.44210K562RBM15
SLIRPENSG00000119705.5673.57650848.11050-0.332402.214001.46600K562RBM22
SLIRPENSG00000119705.5720.22260913.21600-0.342503.271502.38760K562SF3A3
SLIRPENSG00000119705.5483.64300812.46080-0.748406.520204.99280K562SF3B1
SLIRPENSG00000119705.5471.74000737.60470-0.644907.446405.99760K562SF3B4
SLIRPENSG00000119705.5663.47220935.60720-0.495906.912205.50890K562SRPK2
SLIRPENSG00000119705.5526.41130691.49870-0.393503.128801.51380K562SRSF9
SLIRPENSG00000119705.5417.19210701.10040-0.748906.139904.58180K562SUPV3L1
SLIRPENSG00000119705.5667.37190846.39300-0.342802.523601.74660K562TIA1
SLIRPENSG00000119705.5541.84410705.47240-0.380702.200701.37530K562TIAL1
SLIRPENSG00000119705.5525.00240749.50230-0.513604.298703.06110K562TRIM56
SLIRPENSG00000119705.5414.13380741.95380-0.841208.479506.62340K562UCHL5
SLIRPENSG00000119705.5601.68350981.33620-0.7057012.7372011.33340K562UPF1
SLIRPENSG00000119705.5669.25790839.70060-0.327302.342901.53640K562WDR3
SLIRPENSG00000119705.5565.76710755.39870-0.417002.588901.43460K562XRN2
SLIRPENSG00000119705.51239.751801665.60190-0.426002.676401.83010K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLIRP is not available on ENCORE database.





3 RBPs can affect the splicing of SLIRP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSLIRPENSG00000119705.5chr14+7818382278183941781838447818394178182114781822220.420000.001050.02781longerHepG2U2AF2
A3SSSLIRPENSG00000119705.5chr14+7818382278183941781838447818394178182114781822220.596000.000000.00000longerK562AQR
A3SSSLIRPENSG00000119705.5chr14+781838387818394178183844781839417818211478182222-0.055000.000000.00012shorterHepG2CDC40

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLIRP is not avaliable on ENCORE database.