RFC4

General Information

Gene Name : RFC4
Gene ID : ENSG00000163918.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RFC4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RFC4	ENSG00000163918.10	88.72	70.55	79.63	ENCSR000AEF
HepG2	RFC4	ENSG00000163918.10	50.18	80.71	65.44	ENCSR985KAT
K562	RFC4	ENSG00000163918.10	116.03	121.67	118.85	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RFC4 is not avaliable on ENCORE database.

Proteins bound to RNA

RFC4 RNA is bound by 20 proteins.

CanvasJS.com

eCLIP assay for RFC4 is not avaliable on ENCORE database.

20 proteins are bound to RFC4 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	186507701	186507797	-	3'-UTR,CDS,intron-Distal	6.37060	400.00000	K562	PUM2
chr3	186523863	186523969	-	intron-Distal	5.14995	34.52040	HepG2	DKC1
chr3	186507969	186508053	-	CDS,intron-Distal,intron-Proximal	3.71189	25.54121	K562	EFTUD2
chr3	186524184	186524271	-	5'-UTR,intron-Distal,intron-Proximal	4.48072	18.89904	K562	DDX3X
chr3	186507703	186507837	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.85782	12.88857	K562	CPSF6
chr3	186515341	186515396	-	CDS,intron-Distal	3.51514	11.18253	K562	YBX3
chr3	186524181	186524252	-	5'-UTR,intron-Distal,intron-Proximal	6.09471	10.43516	HepG2	PRPF8
chr3	186522375	186522476	-	CDS,intron-Distal	3.36513	9.89473	K562	UCHL5
chr3	186509553	186509642	-	CDS,intron-Distal,intron-Proximal	3.42834	9.71113	K562	LIN28B
chr3	186510592	186510661	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.95036	9.54307	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 35 entries

eCLIP assay for RFC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RFC4 is not available on ENCORE database.
114 RBPs can affect the levels of RFC4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RFC4 is not available on ENCORE database.

114 RBPs can affect the gene expression of RFC4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RFC4	ENSG00000163918.6	392.75660	1186.70950	-1.59530	55.52060	54.01920	HepG2	SRFBP1
RFC4	ENSG00000163918.6	215.24950	721.65040	-1.74530	49.79450	48.22040	HepG2	ZNF622
RFC4	ENSG00000163918.6	223.19440	911.70340	-2.03030	40.38250	38.41730	HepG2	HNRNPLL
RFC4	ENSG00000163918.6	241.49020	888.70900	-1.87970	38.01330	35.90910	HepG2	TARDBP
RFC4	ENSG00000163918.6	201.61620	666.60800	-1.72520	35.15740	33.74050	HepG2	TIAL1
RFC4	ENSG00000163918.6	439.06550	1050.68600	-1.25880	29.55100	28.21720	HepG2	RBM22
RFC4	ENSG00000163918.6	245.67610	762.86430	-1.63470	29.90620	28.18580	HepG2	RPLP0
RFC4	ENSG00000163918.6	596.32750	1257.08070	-1.07590	27.95200	26.37510	HepG2	ETF1
RFC4	ENSG00000163918.6	563.06830	1177.29550	-1.06410	27.41710	25.73200	HepG2	SRSF5
RFC4	ENSG00000163918.6	307.79790	955.34220	-1.63400	26.51450	24.76940	HepG2	GPKOW
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 121 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RFC4 is not available on ENCORE database.

10 RBPs can affect the splicing of RFC4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RFC4	ENSG00000163918.6	chr3	-	186507930	186508044			186507688	186507853	186509513	186509639	-0.18000	0.00000	excluded	K562	AQR
SE	RFC4	ENSG00000163918.6	chr3	-	186512446	186512570			186510592	186510736	186515323	186515403	-0.06300	0.00000	excluded	K562	PUS1
SE	RFC4	ENSG00000163918.6	chr3	-	186512446	186512570			186510592	186510736	186515323	186515403	-0.07800	0.00003	excluded	K562	UTP18
SE	RFC4	ENSG00000163918.6	chr3	-	186512446	186512570			186510592	186510736	186515323	186515403	-0.07500	0.00000	excluded	K562	AGGF1
A3SS	RFC4	ENSG00000163918.6	chr3	-	186522371	186522554			186522371	186522513	186524078	186524247	0.08800	0.00000	longer	K562	AQR
A3SS	RFC4	ENSG00000163918.6	chr3	-	186509478	186509692			186509478	186509639	186510278	186510456	0.09200	0.00000	longer	K562	AQR
MXE	RFC4	ENSG00000163918.6	chr3	-	186507930	186508044	186509513	186509692	186507688	186507853	186510278	186510399	0.13800	0.00000	1included	K562	AQR
MXE	RFC4	ENSG00000163918.6	chr3	-	186507930	186508044	186509513	186509665	186507688	186507853	186510278	186510399	0.22300	0.00000	1included	K562	AQR
MXE	RFC4	ENSG00000163918.6	chr3	-	186508114	186508195	186509513	186509665	186507930	186508044	186510278	186510399	0.08300	0.00000	1included	K562	AQR
MXE	RFC4	ENSG00000163918.6	chr3	-	186508114	186508195	186509513	186509632	186507930	186508044	186510278	186510399	0.05900	0.00018	1included	K562	SF3B4

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RFC4

General Information

Functions

Localization

Domains (AlphaFold: RFC4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RFC4 is not avaliable on ENCORE database.

20 proteins are bound to RFC4 RNA:

eCLIP assay for RFC4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RFC4 is not available on ENCORE database.

114 RBPs can affect the gene expression of RFC4 :

The Knockdown/knockout RNA-Seq assay for RFC4 is not available on ENCORE database.

10 RBPs can affect the splicing of RFC4 :

The Knockdown/knockout RNA-Seq assay for RFC4 is not avaliable on ENCORE database.