SSR4

General Information

Gene Name       : SSR4
Gene ID             : ENSG00000180879.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SSR4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SSR4ENSG00000180879.1338.72102.9470.83ENCSR000AEF
HepG2SSR4ENSG00000180879.13198.93104.56151.75ENCSR985KAT
K562SSR4ENSG00000180879.13212.67131.69172.18ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SSR4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SSR4 RNA is bound by 19 proteins.  







eCLIP assay for SSR4 is not avaliable on ENCORE database.





19 proteins are bound to SSR4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX153063887153063919+3'-UTR3.2579614.01208K562YBX3
chrX153063888153063920+3'-UTR6.0119627.26004K562PABPC4
chrX153063853153063909+3'-UTR,CDS5.4239215.93252HepG2SND1
chrX153063881153063887+3'-UTR,CDS3.3035818.92735K562YBX3
chrX153063931153063947+3'-UTR6.2560118.47292K562PABPC4
chrX153063832153063910+3'-UTR,CDS3.957509.79291HepG2YBX3
chrX153063920153063931+3'-UTR7.5633726.18491K562PABPC4
chrX153063841153063919+3'-UTR,CDS4.616098.71672K562METAP2
chrX153063843153063915+3'-UTR,CDS5.849069.94634HepG2RPS3
chrX153063843153063888+3'-UTR,CDS4.2983419.51384K562PABPC4
chrX153063912153063948+3'-UTR5.170206.84326K562LARP4
chrX153063843153063927+3'-UTR,CDS3.7783115.97745HepG2LARP4
chrX153063842153063903+3'-UTR,CDS3.8166114.12378K562SND1
chrX153060116153060194+5'-UTR,CDS,intron-Proximal3.265524.18010K562NCBP2
chrX153060110153060169+5'-UTR,CDS,intron-Proximal3.4527610.71362K562PABPC4
chrX153060117153060158+5'-UTR,CDS,intron-Proximal3.3663716.30013K562DDX3X
chrX153060106153060210+5'-UTR,CDS,intron-Proximal3.253027.83101K562GEMIN5
chrX153060118153060210+5'-UTR,CDS,intron-Proximal3.568807.43415K562DROSHA
chrX153060119153060219+5'-UTR,CDS,intron-Proximal4.1933220.57782HepG2RPS3
chrX153060119153060210+5'-UTR,CDS,intron-Proximal4.5393841.66607HepG2DDX3X
chrX153063260153063269+CDS5.7424916.14425HepG2SND1
chrX153063222153063269+CDS5.4829727.38653K562YBX3
chrX153063525153063540+CDS,intron-Proximal4.4509418.06821K562SND1
chrX153061887153061921+CDS,intron-Proximal3.542507.09702HepG2DDX3X
chrX153063783153063791+CDS,intron-Proximal3.560713.19473K562APOBEC3C
chrX153063582153063674+CDS,intron-Proximal3.091845.82670HepG2PRPF8
chrX153063835153063869+CDS3.2247630.23670K562YBX3
chrX153063783153063864+CDS,intron-Proximal3.958843.12328HepG2DDX52
chrX153061875153061924+CDS,intron-Proximal3.193449.99247HepG2U2AF2
chrX153063806153063843+CDS3.5678010.58968HepG2LARP4
chrX153061886153061954+CDS,intron-Proximal3.1517115.71144K562PABPC4
chrX153063542153063563+CDS5.2423443.18772K562YBX3
chrX153063188153063231+CDS4.9566826.76366HepG2SND1
chrX153063179153063228+CDS,intron-Proximal5.415289.38330HepG2RPS3
chrX153063247153063270+CDS,intron-Proximal4.9642822.88716K562SND1
chrX153063563153063587+CDS4.4212116.72494K562SND1
chrX153063786153063842+CDS4.9836323.08835K562SND1
chrX153063869153063881+CDS3.4372726.88289K562YBX3
chrX153062912153062932+CDS,intron-Distal,intron-Proximal4.7379418.97384K562SND1
chrX153063781153063836+CDS,intron-Proximal4.6128640.30663K562PABPC4
chrX153063787153063803+CDS6.0694340.40890HepG2SND1
chrX153063787153063809+CDS3.5805418.47219K562YBX3
chrX153063564153063591+CDS5.4135326.17652HepG2SND1
chrX153061888153061935+CDS,intron-Proximal4.0138921.37108K562DDX3X
chrX153061988153062007+CDS3.7287212.05041K562SND1
chrX153063532153063542+CDS3.8823311.45100K562YBX3
chrX153061916153061988+CDS3.3738621.59757K562SND1
chrX153060193153060211+CDS,intron-Proximal3.9073320.98733K562DDX3X
chrX153063782153063806+CDS,intron-Proximal5.647689.94634HepG2RPS3
chrX153061914153061970+CDS3.6581021.70639K562YBX3
chrX153063538153063562+CDS3.330258.98895HepG2YBX3
chrX153060168153060209+CDS3.421183.09105K562EIF3G
chrX153061971153061991+CDS3.1712812.19393K562YBX3
chrX153060168153060212+CDS,intron-Proximal3.190527.22071HepG2NCBP2
chrX153063179153063200+CDS,intron-Proximal3.896746.89681K562PABPC4
chrX153061888153061917+CDS,intron-Proximal3.589127.25768HepG2RPS3
chrX153063179153063197+CDS,intron-Proximal3.5074316.43175K562YBX3
chrX153063783153063787+CDS,intron-Proximal3.6251215.15198K562YBX3
chrX153062940153062989+CDS,intron-Distal,intron-Proximal4.5588617.00283K562PABPC4
chrX153063573153063591+CDS4.807177.70706HepG2RPS3
chrX153063783153063786+CDS,intron-Proximal4.2188410.74304K562SND1
chrX153062911153062944+CDS,intron-Distal,intron-Proximal3.8248114.65827K562YBX3
chrX153063179153063226+CDS,intron-Proximal4.9369718.43613K562SND1
chrX153061954153062008+CDS,intron-Proximal3.478087.82552K562PABPC4
chrX153063525153063532+CDS,intron-Proximal4.6644912.49278K562YBX3
chrX153063588153063608+CDS,intron-Proximal5.0323012.21485K562AQR
chrX153061800153061904+CDS,intron-Proximal3.0191812.64944HepG2SF3A3
chrX153061981153062058+CDS,intron-Proximal3.319505.62208HepG2PRPF8
chrX153063587153063591+CDS4.3512111.78851K562SND1
chrX153063226153063247+CDS5.1160122.16270K562SND1
chrX153063785153063852+CDS4.6300120.26606K562RPS3
chrX153062932153062988+CDS,intron-Distal,intron-Proximal5.1274529.00431K562SND1
chrX153062912153062943+CDS,intron-Distal,intron-Proximal3.015716.84061HepG2SND1
chrX153063179153063181+CDS,intron-Proximal4.6937321.31990HepG2SND1
chrX153062967153062987+CDS,intron-Distal3.3688116.41299K562YBX3
chrX153063179153063223+CDS,intron-Proximal3.512213.55142K562METAP2
chrX153063540153063563+CDS4.3639211.52681K562SND1
chrX153063232153063260+CDS4.8869218.12342HepG2SND1
chrX153063782153063787+CDS,intron-Proximal5.6542327.32629HepG2SND1
chrX153060168153060193+CDS4.2332324.08145K562DDX3X
chrX153063803153063853+CDS6.1997553.30187HepG2SND1
chrX153063197153063216+CDS3.9962215.91881K562YBX3
chrX153062944153062967+CDS,intron-Distal3.6234912.99568K562YBX3
chrX153062943153062988+CDS,intron-Distal,intron-Proximal4.8185830.19151HepG2SND1
chrX153063563153063591+CDS4.4061140.26227K562YBX3
chrX153063181153063188+CDS4.9171624.31867HepG2SND1
chrX153063745153063822+CDS,intron-Proximal4.8460214.01838K562AQR
chrX153063525153063539+CDS,intron-Proximal5.5382616.14425HepG2SND1
chrX153061609153061706+intron-Distal,intron-Proximal4.055053.57018HepG2HNRNPK
chrX153061369153061452+intron-Distal,intron-Proximal4.2191514.62876HepG2U2AF2
chrX153063693153063762+intron-Proximal5.075184.90235K562SF3B4
chrX153063608153063673+intron-Proximal5.6951119.39840K562AQR
chrX153063623153063683+intron-Proximal4.495624.58968K562PRPF8
chrX153063273153063305+intron-Proximal4.556304.68690HepG2PRPF8
chrX153061799153061878+intron-Proximal3.689697.21382HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SSR4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SSR4 is not available on ENCORE database.

  • 109 RBPs can affect the levels of SSR4.  








The Knockdown/knockout RNA-Seq assay for SSR4 is not available on ENCORE database.





109 RBPs can affect the gene expression of SSR4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SSR4ENSG00000180879.91811.791101308.858700.469002.972502.34570HepG2ACO1
SSR4ENSG00000180879.91087.62780786.876700.466902.643501.62850HepG2AKAP8
SSR4ENSG00000180879.91573.44430845.280900.896303.088902.09770HepG2BCCIP
SSR4ENSG00000180879.91202.48840734.328900.711404.069902.99900HepG2BCLAF1
SSR4ENSG00000180879.91316.88760655.286701.0068016.7169015.42670HepG2BOP1
SSR4ENSG00000180879.91127.28740601.573100.9059012.3977011.05840HepG2CPSF6
SSR4ENSG00000180879.91922.565901172.129300.713803.732302.45180HepG2CPSF7
SSR4ENSG00000180879.9810.49390482.186500.7491010.813908.86610HepG2YBX3
SSR4ENSG00000180879.91591.908601101.504800.531209.113208.07180HepG2CELF1
SSR4ENSG00000180879.91449.378701184.370700.291203.974703.11210HepG2DAZAP1
SSR4ENSG00000180879.91429.278101210.393300.239702.533701.73250HepG2DDX19B
SSR4ENSG00000180879.9615.51970482.878700.350002.443101.35730HepG2DDX1
SSR4ENSG00000180879.91511.70110831.167000.862908.100306.85750HepG2DDX55
SSR4ENSG00000180879.92798.097001615.620200.792309.499208.42780HepG2DDX6
SSR4ENSG00000180879.9654.54510473.498500.467004.358903.49280HepG2DNAJC21
SSR4ENSG00000180879.9717.76620469.277500.613004.488103.69320HepG2DNAJC2
SSR4ENSG00000180879.92072.712601119.316200.8888014.9126013.13790HepG2EIF4G2
SSR4ENSG00000180879.91226.042101705.51250-0.476202.279301.47490HepG2G3BP2
SSR4ENSG00000180879.9867.87400681.886500.347901.871301.33780HepG2GPKOW
SSR4ENSG00000180879.9882.87720598.650700.560403.467601.92170HepG2HNRNPA0
SSR4ENSG00000180879.91515.801901088.479000.477705.890404.61240HepG2HNRNPA2B1
SSR4ENSG00000180879.91214.67620907.971300.419802.971602.23000HepG2HNRNPF
SSR4ENSG00000180879.92520.106801627.316800.630906.649905.60160HepG2HNRNPK
SSR4ENSG00000180879.91577.742001078.865800.5482012.2564010.93360HepG2HNRNPL
SSR4ENSG00000180879.9895.91940650.740800.461202.411601.81850HepG2HNRNPLL
SSR4ENSG00000180879.9669.71610528.197200.342403.013102.38270HepG2HNRNPU
SSR4ENSG00000180879.91108.65150894.093200.310202.558001.86180HepG2IGF2BP1
SSR4ENSG00000180879.91114.312101632.11740-0.550602.823202.14220HepG2IGF2BP2
SSR4ENSG00000180879.9869.64970539.538200.6886012.4546011.02230HepG2ILF2
SSR4ENSG00000180879.91767.234201129.795100.645305.572604.37950HepG2LARP4
SSR4ENSG00000180879.91057.73950703.803900.587605.569403.96980HepG2LARP7
SSR4ENSG00000180879.91043.50940738.736500.498203.933402.48730HepG2LIN28B
SSR4ENSG00000180879.91239.738801741.81400-0.490602.262601.68830HepG2MATR3
SSR4ENSG00000180879.9931.87140636.339900.550204.629502.78540HepG2NIP7
SSR4ENSG00000180879.91235.00210811.684200.605404.083902.35390HepG2NKRF
SSR4ENSG00000180879.91566.361101174.420500.415405.105304.07440HepG2NOL12
SSR4ENSG00000180879.91048.43470421.862101.3133013.7939010.51870HepG2NOLC1
SSR4ENSG00000180879.91166.62770882.031400.403303.201101.47800HepG2NUP35
SSR4ENSG00000180879.91097.86080646.740300.763304.709203.52820HepG2PABPC1
SSR4ENSG00000180879.9727.35330522.841300.476205.024403.92770HepG2PARN
SSR4ENSG00000180879.9823.22500471.112000.8051012.6897011.17740HepG2PPIL4
SSR4ENSG00000180879.9682.27130819.96630-0.265202.037701.36680HepG2PRPF4
SSR4ENSG00000180879.91027.761201549.78330-0.5926010.812109.86710HepG2PTBP1
SSR4ENSG00000180879.91951.389501190.094200.7133023.2602021.88340HepG2PUM1
SSR4ENSG00000180879.9988.985901333.12140-0.430804.367603.62610HepG2PUS1
SSR4ENSG00000180879.91093.006201678.48180-0.6189010.432309.32910HepG2QKI
SSR4ENSG00000180879.92282.650401641.782000.475302.970302.43910HepG2RBM22
SSR4ENSG00000180879.91037.646001523.31950-0.553907.087506.04800HepG2RBM25
SSR4ENSG00000180879.91293.07150848.704500.607404.700903.38630HepG2RBM27
SSR4ENSG00000180879.91153.752101724.77100-0.5801011.3161010.36380HepG2NELFE
SSR4ENSG00000180879.9923.320401606.36980-0.7989019.7590018.36880HepG2RECQL
SSR4ENSG00000180879.9920.43340560.614500.715205.726904.87910HepG2RPS19
SSR4ENSG00000180879.91059.43540782.676000.436702.897502.08040HepG2RPS2
SSR4ENSG00000180879.91368.94560470.390701.5410062.9272060.55780HepG2SAFB2
SSR4ENSG00000180879.9949.14810669.331200.503803.210701.80790HepG2SART3
SSR4ENSG00000180879.91594.706401074.963900.5689013.0530011.72310HepG2SLBP
SSR4ENSG00000180879.9911.66560548.568300.7327014.0793012.80340HepG2SMN1
SSR4ENSG00000180879.91227.35880641.389000.936202.860901.88770HepG2SMNDC1
SSR4ENSG00000180879.91145.21320716.660700.676204.301003.31840HepG2SNRNP70
SSR4ENSG00000180879.9599.854601684.18530-1.4894060.1419058.58340HepG2SRSF1
SSR4ENSG00000180879.91449.460801106.921700.388905.500804.66160HepG2SRSF5
SSR4ENSG00000180879.91111.53830892.049500.317303.378502.61980HepG2SRSF7
SSR4ENSG00000180879.91921.569801609.999300.255103.168702.62880HepG2SSB
SSR4ENSG00000180879.9881.51710618.462800.511203.236502.04130HepG2STIP1
SSR4ENSG00000180879.91630.01200970.374400.748205.209303.94100HepG2SUPT6H
SSR4ENSG00000180879.9813.955801513.78450-0.8951020.3561019.03210HepG2TAF15
SSR4ENSG00000180879.91178.15190634.385900.8930012.5194011.14470HepG2TARDBP
SSR4ENSG00000180879.91021.65830554.426500.881705.102603.81120HepG2TFIP11
SSR4ENSG00000180879.9971.046001390.99030-0.518506.553105.27240HepG2TIA1
SSR4ENSG00000180879.91253.82460517.827101.2757041.3728039.52140HepG2TRIM56
SSR4ENSG00000180879.91767.976501095.268500.6907011.143709.19230HepG2TUFM
SSR4ENSG00000180879.9823.42070488.619500.752806.623505.43660HepG2UCHL5
SSR4ENSG00000180879.91586.029801247.502400.346305.013104.11550HepG2UPF1
SSR4ENSG00000180879.91707.962001372.019100.315905.111804.42520HepG2ZNF622
SSR4ENSG00000180879.92756.865202082.147400.404907.773406.89030K562AGGF1
SSR4ENSG00000180879.91826.789901339.419200.447606.984204.59030K562AKAP1
SSR4ENSG00000180879.93278.739802287.929500.519006.937605.21160K562AKAP8
SSR4ENSG00000180879.93933.623702166.559900.860403.217002.51150K562AKAP8L
SSR4ENSG00000180879.93161.208702273.226300.475604.665403.44420K562ATP5C1
SSR4ENSG00000180879.91549.648701118.878700.469807.677106.05170K562BCLAF1
SSR4ENSG00000180879.9963.73170702.544100.455903.447102.47410K562BOP1
SSR4ENSG00000180879.91170.98750819.482200.514803.517302.29890K562CCAR1
SSR4ENSG00000180879.91623.141301059.437400.615404.332802.71620K562CIRBP
SSR4ENSG00000180879.92527.549502075.773000.284003.674902.39170K562CPEB4
SSR4ENSG00000180879.91243.03020848.836300.550204.953503.47740K562CSTF2
SSR4ENSG00000180879.92722.519403450.30270-0.341802.945001.93980K562CELF1
SSR4ENSG00000180879.91412.18050980.995400.525508.758006.42240K562DDX27
SSR4ENSG00000180879.91772.599301357.118100.385202.692401.66450K562DDX3X
SSR4ENSG00000180879.91784.008901375.919500.374604.773002.89390K562DDX6
SSR4ENSG00000180879.93254.895602331.428800.481309.545007.71560K562DKC1
SSR4ENSG00000180879.92552.937001619.146600.6568015.3570013.86890K562EIF2S2
SSR4ENSG00000180879.9885.51120594.038700.575906.873405.63100K562EIF3G
SSR4ENSG00000180879.91643.831701276.798300.364404.293002.79790K562EIF4B
SSR4ENSG00000180879.91559.239601237.596400.333203.752502.21420K562EWSR1
SSR4ENSG00000180879.91751.894501064.708000.718403.691102.70210K562FIP1L1
SSR4ENSG00000180879.91260.109701474.47160-0.226602.042501.50780K562FXR1
SSR4ENSG00000180879.9195.96210586.13690-1.580708.280806.92460K562G3BP2
SSR4ENSG00000180879.91067.90770713.140100.582403.032802.20240K562GPKOW
SSR4ENSG00000180879.93345.379102157.472000.632704.003603.09710K562GRSF1
SSR4ENSG00000180879.91635.367502225.39810-0.444402.889801.79310K562HNRNPA1
SSR4ENSG00000180879.92633.644401443.240900.867604.336803.34700K562HSPD1
SSR4ENSG00000180879.91608.57290989.187900.701402.866501.81860K562IGF2BP2
SSR4ENSG00000180879.91372.667901005.854300.448504.307802.74470K562IGF2BP3
SSR4ENSG00000180879.93266.109602200.963600.569307.908805.70490K562MAK16
SSR4ENSG00000180879.91366.437601036.681500.398302.998702.03410K562MATR3
SSR4ENSG00000180879.92364.673901524.559200.633102.929501.90170K562PABPN1
SSR4ENSG00000180879.92226.789501208.939200.881104.158203.12570K562PPIG
SSR4ENSG00000180879.92434.102403256.45420-0.419906.766005.03480K562PUM1
SSR4ENSG00000180879.93456.455202148.696000.685707.157106.32990K562PUS1
SSR4ENSG00000180879.93259.310702093.528300.6385014.4576013.09120K562RBM15
SSR4ENSG00000180879.91547.90260976.788800.664102.657801.86040K562RPS19
SSR4ENSG00000180879.91876.740601247.572000.589006.123604.50580K562SAFB
SSR4ENSG00000180879.9463.82150678.33240-0.548403.050102.02840K562SF3B1
SSR4ENSG00000180879.9922.37620608.892800.599103.803902.79610K562SF3B4
SSR4ENSG00000180879.9342.43680545.47740-0.671705.833303.31120K562SND1
SSR4ENSG00000180879.91160.09070820.574700.499402.261501.35570K562SRFBP1
SSR4ENSG00000180879.91497.964201843.24110-0.299204.497903.33710K562SRPK2
SSR4ENSG00000180879.91076.27130658.196300.709404.858303.40230K562SRSF4
SSR4ENSG00000180879.91429.81680934.827800.613004.923003.44740K562SRSF5
SSR4ENSG00000180879.91866.178601001.402400.898007.402106.18380K562TARDBP
SSR4ENSG00000180879.91510.35470966.010300.644708.268006.74390K562TIA1
SSR4ENSG00000180879.91467.13780948.345200.629407.125405.16830K562TRA2A
SSR4ENSG00000180879.9410.34340586.31730-0.514802.423801.67190K562U2AF2
SSR4ENSG00000180879.91333.020801720.22570-0.367906.134604.92660K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SSR4 is not available on ENCORE database.





2 RBPs can affect the splicing of SSR4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESSR4ENSG00000180879.9chrX+1530611171530612591530601331530602091530618881530620070.089000.000000.00000includedK562SRSF1
SESSR4ENSG00000180879.9chrX+153062912153062987153061888153062007153063179153063269-0.053000.004340.04753excludedHepG2U2AF2
SESSR4ENSG00000180879.9chrX+1530611171530612591530601331530602091530618881530620070.139000.000000.00000includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SSR4 is not avaliable on ENCORE database.