MIR3654

General Information

Gene Name       : MIR3654
Gene ID             : ENSG00000284135.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MIR3654)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MIR3654ENSG00000284135.10.000.000.00ENCSR000AEF
HepG2MIR3654ENSG00000284135.10.000.000.00ENCSR985KAT
K562MIR3654ENSG00000284135.10.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MIR3654 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MIR3654 RNA is bound by 28 proteins.  







eCLIP assay for MIR3654 is not avaliable on ENCORE database.





28 proteins are bound to MIR3654 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116233427662334303-3'-UTR,CDS,intron-Distal,intron-Proximal4.6020511.76140HepG2G3BP1
chr116233855862338580-3'-UTR,CDS,intron-Distal4.561797.48557K562IGF2BP1
chr116234105162341104-3'-UTR,intron-Distal3.212104.95232K562PRPF8
chr116232722162327232-3'-UTR,CDS,intron-Distal3.46479400.00000K562YBX3
chr116234011662340170-3'-UTR,CDS,intron-Distal3.63249400.00000K562PABPC4
chr116232727262327284-3'-UTR,CDS,intron-Distal4.33562400.00000K562LIN28B
chr116233935162339373-3'-UTR,CDS,intron-Distal3.79950400.00000K562PABPC4
chr116234130262341333-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.0227931.62231K562APOBEC3C
chr116233442862334482-3'-UTR,CDS,intron-Distal3.1218122.18353K562METAP2
chr116232777262327836-3'-UTR,CDS,intron-Distal3.111244.99174K562PUM1
chr116233912962339154-3'-UTR,CDS,intron-Distal3.1141432.62317HepG2SUB1
chr116232723762327247-3'-UTR,CDS,intron-Distal3.75156400.00000K562YBX3
chr116232724762327250-3'-UTR,CDS,intron-Distal3.76969400.00000K562YBX3
chr116234005562340057-3'-UTR,CDS,intron-Distal,intron-Proximal3.96716400.00000K562PABPC4
chr116233484762334888-3'-UTR,CDS,intron-Distal,intron-Proximal3.5634818.16773K562AQR
chr116234022062340235-3'-UTR,intron-Distal,intron-Proximal3.786463.15719K562SMNDC1
chr116232725062327265-3'-UTR,CDS,intron-Distal3.75172400.00000K562YBX3
chr116232779662327833-3'-UTR,CDS,intron-Distal5.6308447.45955K562LIN28B
chr116232755062327602-3'-UTR,CDS,intron-Distal4.7536937.04337K562METAP2
chr116232722262327263-3'-UTR,CDS,intron-Distal5.32321400.00000HepG2LIN28B
chr116232791262327971-3'-UTR,CDS,intron-Distal,intron-Proximal4.104394.84268K562SF3B4
chr116233913962339221-3'-UTR,CDS,intron-Distal,intron-Proximal4.466299.57932HepG2AQR
chr116234124262341280-3'-UTR,intron-Distal,intron-Proximal3.347654.63311K562AQR
chr116232775362327759-3'-UTR,CDS,intron-Distal,intron-Proximal3.883453.12746HepG2GRWD1
chr116233901162339019-3'-UTR,CDS,intron-Distal,intron-Proximal3.6734113.43228K562METAP2
chr116233442562334484-3'-UTR,CDS,intron-Distal,intron-Proximal3.0269817.54350K562ZNF800
chr116232721962327232-3'-UTR,CDS,intron-Distal3.1457329.80244K562LIN28B
chr116232783362327838-3'-UTR,CDS,intron-Distal6.0261929.47377K562LIN28B
chr116233839362338439-3'-UTR,CDS,intron-Distal,intron-Proximal4.422564.92499HepG2AQR
chr116232728162327296-3'-UTR,CDS,intron-Distal5.4731730.28109HepG2LIN28B
chr116232754762327594-3'-UTR,CDS,intron-Distal3.971745.35382K562ZNF800
chr116234019662340215-3'-UTR,CDS,intron-Distal,intron-Proximal3.0906932.45316K562APOBEC3C
chr116232763462327665-3'-UTR,CDS,intron-Distal,intron-Proximal3.062844.10200K562PUM1
chr116233447462334482-3'-UTR,CDS,intron-Distal3.1081213.43904K562LIN28B
chr116234006962340111-3'-UTR,CDS,intron-Distal4.00648400.00000K562PABPC4
chr116233843662338458-3'-UTR,CDS,intron-Distal,intron-Proximal3.121523.04935K562ZNF800
chr116234011362340200-3'-UTR,CDS,intron-Distal3.2102150.50468HepG2LARP4
chr116232728462327297-3'-UTR,CDS,intron-Distal5.3178860.33519K562LIN28B
chr116233427762334293-3'-UTR,CDS,intron-Distal,intron-Proximal3.3399811.75795K562PABPC4
chr116233855362338598-3'-UTR,CDS,intron-Distal,intron-Proximal4.544293.95187HepG2AQR
chr116234109862341190-3'-UTR,intron-Distal4.172227.26711HepG2EFTUD2
chr116234130162341332-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.048693.36383K562NCBP2
chr116234104362341078-3'-UTR,intron-Distal3.360673.49123HepG2EFTUD2
chr116234130762341329-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.84200400.00000K562PABPC4
chr116234130462341330-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.0416816.57447HepG2LARP4
chr116234006962340087-3'-UTR,CDS,intron-Distal3.3210336.39030HepG2LARP4
chr116233487262334923-3'-UTR,CDS,intron-Distal3.8076432.49573K562METAP2
chr116233487962334916-3'-UTR,CDS,intron-Distal3.593997.89388HepG2PRPF8
chr116232726362327281-3'-UTR,CDS,intron-Distal5.45736400.00000HepG2LIN28B
chr116232723662327240-3'-UTR,CDS,intron-Distal3.75792400.00000K562METAP2
chr116232720362327236-3'-UTR,CDS,intron-Distal4.1443678.84783K562METAP2
chr116233901962339071-3'-UTR,CDS,intron-Distal,intron-Proximal3.9882419.55969K562METAP2
chr116233930962339318-3'-UTR,CDS,intron-Distal,intron-Proximal3.2675929.40514K562METAP2
chr116233912062339154-3'-UTR,CDS,intron-Distal3.3639330.94535K562METAP2
chr116232725162327256-3'-UTR,CDS,intron-Distal4.07307400.00000K562LIN28B
chr116233445062334474-3'-UTR,CDS,intron-Distal3.1375322.40502K562LIN28B
chr116233492362334940-3'-UTR,CDS,intron-Distal4.1413825.63988K562METAP2
chr116232723262327242-3'-UTR,CDS,intron-Distal4.06315400.00000K562LIN28B
chr116232775362327758-3'-UTR,CDS,intron-Distal,intron-Proximal3.3387411.09025K562METAP2
chr116233494062335001-3'-UTR,CDS,intron-Distal,intron-Proximal3.7082132.84955K562METAP2
chr116232724262327248-3'-UTR,CDS,intron-Distal4.06286400.00000K562LIN28B
chr116232728062327281-3'-UTR,CDS,intron-Distal3.211197.43074K562METAP2
chr116234019762340215-3'-UTR,CDS,intron-Distal,intron-Proximal3.6519213.88098K562LARP4
chr116233428662334293-3'-UTR,CDS,intron-Distal4.589953.22788K562XRCC6
chr116234019862340214-3'-UTR,CDS,intron-Distal4.57425400.00000K562PABPC4
chr116232754062327550-3'-UTR,CDS,intron-Distal,intron-Proximal4.0939623.02068K562METAP2
chr116232714262327202-3'-UTR,CDS,intron-Distal4.9924542.26835K562METAP2
chr116234130062341335-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.0255414.79352K562RPS3
chr116232791462327926-3'-UTR,CDS,intron-Distal3.3259811.75795K562PABPC4
chr116232724062327279-3'-UTR,CDS,intron-Distal3.74109400.00000K562METAP2
chr116232776462327781-3'-UTR,CDS,intron-Distal,intron-Proximal3.6596319.38420K562LIN28B
chr116232728562327309-3'-UTR,CDS,intron-Distal3.378586.51943K562PUM1
chr116232723262327234-3'-UTR,CDS,intron-Distal3.31046400.00000K562YBX3
chr116232713862327144-3'-UTR,intron-Distal3.0865243.57331K562YBX3
chr116233444262334551-3'-UTR,CDS,intron-Distal,intron-Proximal4.1336110.80137HepG2AQR
chr116233482662334879-3'-UTR,CDS,intron-Distal,intron-Proximal5.2091726.82267HepG2PRPF8
chr116232726562327278-3'-UTR,CDS,intron-Distal3.58534400.00000K562YBX3
chr116232730362327309-3'-UTR,CDS,intron-Distal3.8892620.61355K562METAP2
chr116234020262340214-3'-UTR,CDS,intron-Distal3.0290414.98784K562RPS3
chr116232762862327665-3'-UTR,CDS,intron-Distal,intron-Proximal3.328333.50663K562ZNF800
chr116234005962340069-3'-UTR,CDS,intron-Distal3.82830400.00000K562PABPC4
chr116234012262340166-3'-UTR,CDS,intron-Distal3.2478113.50257K562RPS3
chr116232724862327251-3'-UTR,CDS,intron-Distal4.12377400.00000K562LIN28B
chr116234130262341330-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.6574913.88098K562LARP4
chr116232790962327926-3'-UTR,CDS,intron-Distal4.5734411.49757HepG2G3BP1
chr116234130162341307-3'-UTR,CDS,intron-Distal,intron-Proximal4.87530400.00000K562PABPC4
chr116232778162327796-3'-UTR,CDS,intron-Distal4.6941028.23341K562LIN28B
chr116233856562338580-3'-UTR,CDS,intron-Distal3.6611213.69940K562METAP2
chr116234130162341304-3'-UTR,CDS,intron-Distal,intron-Proximal3.0211416.35522HepG2LARP4
chr116233487062334872-3'-UTR,CDS,intron-Distal,intron-Proximal3.8052113.43368K562LIN28B
chr116232771662327776-3'-UTR,CDS,intron-Distal,intron-Proximal4.772485.68502HepG2PRPF8
chr116232725662327272-3'-UTR,CDS,intron-Distal4.23891400.00000K562LIN28B
chr116233843662338469-3'-UTR,CDS,intron-Distal,intron-Proximal3.392479.14745K562METAP2
chr116235887462358981-5'-UTR,CDS,intron-Distal5.557366.69401K562DDX3X
chr116234889162348973-3'-UTR,CDS,intron-Distal,intron-Proximal4.670716.76118K562LIN28B
chr116234465362344706-CDS,intron-Distal,intron-Proximal3.919603.86355HepG2PPIG
chr116234475162344812-CDS,intron-Distal,intron-Proximal3.815726.26407K562SF3B4
chr116234412462344218-CDS,intron-Distal,intron-Proximal3.529165.30777HepG2PPIG
chr116233917362339255-intron-Distal,intron-Proximal6.2822821.53361K562EFTUD2
chr116234254162342624-3'-UTR,CDS,intron-Distal3.740343.62357HepG2U2AF2
chr116233839462338418-intron-Distal,intron-Proximal5.323597.23718K562AQR
chr116233650562336578-intron-Distal4.197943.69425K562TARDBP
chr116233473062334805-intron-Distal,intron-Proximal4.163363.71397K562KHSRP
chr116234001362340041-intron-Distal,intron-Proximal5.511388.38577HepG2PRPF8
chr116233473362334787-intron-Distal,intron-Proximal3.963553.77594K562RBM22
chr116233461862334714-intron-Distal4.928627.01496K562KHSRP
chr116234508962345154-intron-Distal4.154866.11515K562PTBP1
chr116233892862339011-intron-Distal,intron-Proximal5.8674713.29596HepG2AQR
chr116233482762334847-intron-Distal,intron-Proximal5.6545818.01578K562AQR
chr116234300562343119-CDS,intron-Distal3.858015.68843K562DDX6
chr116233916262339241-intron-Distal,intron-Proximal4.684658.44359HepG2EFTUD2
chr116233896862339011-intron-Distal,intron-Proximal4.221836.48405K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MIR3654 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MIR3654 is not available on ENCORE database.

  • 56 RBPs can affect the levels of MIR3654.  








The Knockdown/knockout RNA-Seq assay for MIR3654 is not available on ENCORE database.





56 RBPs can affect the gene expression of MIR3654 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MIR3654ENSG00000255508.3108.4696058.197400.898202.053501.51490HepG2ACO1
MIR3654ENSG00000255508.3153.1375089.139000.780602.986102.36710HepG2BOP1
MIR3654ENSG00000255508.3122.9951035.180001.805704.193001.80830HepG2CDC40
MIR3654ENSG00000255508.384.0479024.297201.790303.630902.41220HepG2CSTF2
MIR3654ENSG00000255508.324.7934083.20540-1.746702.087201.43040HepG2DAZAP1
MIR3654ENSG00000255508.346.83150143.64770-1.617003.101502.03840HepG2DDX5
MIR3654ENSG00000255508.3106.9520040.530201.399805.895804.40510HepG2EIF3G
MIR3654ENSG00000255508.3116.1476030.326901.937207.394406.30060HepG2EIF4B
MIR3654ENSG00000255508.3412.5210092.068302.1636035.2539033.54570HepG2ETF1
MIR3654ENSG00000255508.3186.1384029.153102.6746012.9250011.54160HepG2G3BP1
MIR3654ENSG00000255508.373.8701030.949901.255002.560301.70620HepG2G3BP2
MIR3654ENSG00000255508.3114.4596029.520401.955008.440507.27370HepG2HNRNPK
MIR3654ENSG00000255508.373.3860029.806301.299803.177602.09260HepG2KHSRP
MIR3654ENSG00000255508.3107.7417021.621702.316903.937201.73880HepG2NUFIP2
MIR3654ENSG00000255508.378.6704043.438900.856702.255601.68150HepG2QKI
MIR3654ENSG00000255508.3124.2613046.201201.427305.263502.77950HepG2RBM14
MIR3654ENSG00000255508.379.00490148.28080-0.908303.947302.94380HepG2RBM15
MIR3654ENSG00000255508.384.22860135.45320-0.685402.198401.58010HepG2RPLP0
MIR3654ENSG00000255508.374.5704036.716701.022102.455801.70090HepG2RPS3A
MIR3654ENSG00000255508.373.8021021.035501.810703.370001.83460HepG2SF1
MIR3654ENSG00000255508.378.2345018.788602.057804.207502.51410HepG2SNRNP200
MIR3654ENSG00000255508.3109.6139035.477901.627308.660307.77970HepG2SRSF9
MIR3654ENSG00000255508.3215.3930038.481402.4846016.3449014.94100HepG2SUPV3L1
MIR3654ENSG00000255508.3115.8381021.870002.405006.133904.60090HepG2U2AF2
MIR3654ENSG00000255508.353.8049022.737501.242603.122402.31780HepG2UCHL5
MIR3654ENSG00000255508.3230.54910107.303101.103307.998507.06470HepG2UTP3
MIR3654ENSG00000255508.3224.90020349.14440-0.634503.668802.23710K562ABCF1
MIR3654ENSG00000255508.3353.59430266.607300.407302.046301.48190K562AKAP8L
MIR3654ENSG00000255508.3386.88500144.070901.425003.215502.59190K562AQR
MIR3654ENSG00000255508.3225.63280322.21520-0.514002.258301.37650K562CELF1
MIR3654ENSG00000255508.3196.65400339.01300-0.785701.899201.34060K562DDX47
MIR3654ENSG00000255508.3175.67360262.12370-0.577402.730101.79760K562EIF4G2
MIR3654ENSG00000255508.383.53710143.43170-0.779902.771801.64410K562FKBP4
MIR3654ENSG00000255508.393.9569046.795301.005502.245501.69000K562FXR1
MIR3654ENSG00000255508.313.2205033.34160-1.334501.968901.38490K562G3BP2
MIR3654ENSG00000255508.392.95780165.15700-0.829203.423602.77010K562HNRNPC
MIR3654ENSG00000255508.3313.27200206.475300.601303.013002.03600K562HNRNPM
MIR3654ENSG00000255508.324.9575070.38120-1.495703.095702.20500K562MAGOH
MIR3654ENSG00000255508.3151.32730279.41170-0.884704.081002.70950K562MSI2
MIR3654ENSG00000255508.3187.72180286.68670-0.610902.802901.30730K562NOL12
MIR3654ENSG00000255508.3200.02120264.38880-0.402501.948301.30900K562NSUN2
MIR3654ENSG00000255508.3212.89860345.26590-0.697503.907702.91870K562PCBP3
MIR3654ENSG00000255508.3142.82750264.82030-0.890706.173504.98130K562POLR2G
MIR3654ENSG00000255508.3235.74580148.084100.670703.240202.24870K562PSIP1
MIR3654ENSG00000255508.3193.73690304.13490-0.650603.319202.14520K562PUM1
MIR3654ENSG00000255508.3119.7362065.521100.869703.289102.36660K562RBM22
MIR3654ENSG00000255508.3116.3023068.963100.753902.553601.50910K562NELFE
MIR3654ENSG00000255508.352.8388097.29560-0.880802.340201.59200K562RPS19
MIR3654ENSG00000255508.3283.97270119.033501.254302.549601.41310K562SF1
MIR3654ENSG00000255508.3180.05570260.89210-0.535002.906402.07360K562SF3A3
MIR3654ENSG00000255508.394.3658034.633801.446005.929704.64210K562SF3B4
MIR3654ENSG00000255508.3397.15070136.851201.537004.834203.06930K562SNRNP200
MIR3654ENSG00000255508.3202.29360128.093000.659202.759201.73710K562SRFBP1
MIR3654ENSG00000255508.3199.23800129.047000.626502.424301.44830K562SRSF4
MIR3654ENSG00000255508.3156.00170329.31370-1.077908.444505.96660K562SSRP1
MIR3654ENSG00000255508.3291.65860151.332900.946503.415802.34440K562TRIM56
MIR3654ENSG00000255508.3166.44580293.53440-0.818505.287803.22460K562TRIP6
MIR3654ENSG00000255508.3170.66710280.33750-0.716005.054704.11480K562UPF1
MIR3654ENSG00000255508.3187.03940418.24590-1.161005.989904.24380K562UTP3
MIR3654ENSG00000255508.3135.46420239.87520-0.824405.025303.83010K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MIR3654 is not available on ENCORE database.





7 RBPs can affect the splicing of MIR3654 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMIR3654ENSG00000255508.3chr11-623485776234867862346032623465026234885762349173-0.077000.000530.00713excludedK562AQR
SEMIR3654ENSG00000255508.3chr11-623485776234867862346032623465026234885762349173-0.139000.000170.00392excludedK562PUS1
SEMIR3654ENSG00000255508.3chr11-623485776234867862346032623465026234885762349173-0.155000.000110.00631excludedK562UTP18
SEMIR3654ENSG00000255508.3chr11-623485776234867862346032623465026234885762349173-0.093000.002420.05313excludedK562RBM15
SEMIR3654ENSG00000255508.3chr11-623485776234867862346032623465026234885762349173-0.149000.000020.00120excludedK562AGGF1
A3SSMIR3654ENSG00000255508.3chr11-6234469462344856623446946234476362346032623465020.064000.000070.00062longerK562AQR
A5SSMIR3654ENSG00000255508.3chr11-623588756235900362358991623590036235650262356693-0.395000.000580.03497shorterK562U2AF2
RIMIR3654ENSG00000255508.3chr11-6234005562342380623400556234021462342148623423800.159000.002460.03998includedHepG2G3BP1
MXEMIR3654ENSG00000255508.3chr11-62346032623465026234885762349173623446536234476362356502623566930.137000.000950.008701includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MIR3654 is not avaliable on ENCORE database.