ENCORE RBNS:APOBEC3C

APOBEC3C RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	APOBEC3C
gene_aliases
Status	Released
Status_date	2020-11-23
Project	ENCODE4
Note
ID	23

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
APOBEC3C-20	RBNS	20-20	20	APOBEC3C_20.fastq.gz
APOBEC3C-320	RBNS	20-20	320	APOBEC3C_320.fastq.gz
APOBEC3C-80	RBNS	20-20	80	APOBEC3C_80.fastq.gz
APOBEC3C-input	CN	20-20	0	APOBEC3C_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:APOBEC3C	ENCSR472KKU	experiment	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-42	Yes	Released	2020-11-23	ENCODE4			1898
chris-burge:lib-APOBEC3C-1	ENCLB385TTO	library	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-41	Yes	Released	2020-11-23	ENCODE4			1918
chris-burge:lib-APOBEC3C-2	ENCLB580CIB	library	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-42	Yes	Released	2020-11-23	ENCODE4			1919
chris-burge:lib-APOBEC3C-3	ENCLB295ONF	library	RNA Bind-n-Seq	APOBEC3C	KPNB1-BGKcLV13-45	Yes	Released	2020-11-23	ENCODE4			1920
chris-burge:APOBEC3C_20.fastq.gz	ENCFF596THB	file_fastq	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-41	Yes	Released	2020-11-23	ENCODE4			1958
chris-burge:APOBEC3C_320.fastq.gz	ENCFF336ZLG	file_fastq	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-42	Yes	Released	2020-11-23	ENCODE4			1959
chris-burge:APOBEC3C_80.fastq.gz	ENCFF288DDJ	file_fastq	RNA Bind-n-Seq	APOBEC3C	KPNB1-BGKcLV13-45	Yes	Released	2020-11-23	ENCODE4			1960
chris-burge:APOBEC3C_input.fastq.gz	ENCFF683ZRF	file_fastq	RNA Bind-n-Seq	APOBEC3C	KPNB1-BGKcLV13-46	Yes	Released	2020-11-23	ENCODE4			1961
chris-burge:APOBEC3C_5mer_logo0.PWM	ENCFF056BZQ	file_pwm	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-42	Yes	Released	2020-11-23	ENCODE4			2002
chris-burge:APOBEC3C_6mer_logo0.PWM	ENCFF991VQM	file_pwm	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-42	Yes	Released	2020-11-23	ENCODE4			2003
chris-burge:APOBEC3C_6mer_logo1.PWM	ENCFF074EJA	file_pwm	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-42	Yes	Released	2020-11-23	ENCODE4			2004
chris-burge:APOBEC3C_enrichment_R.4mers.mark_adapters.txt	ENCFF628ZQW	file_enrichment	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-42	Yes	Released	2020-11-23	ENCODE4			2053
chris-burge:APOBEC3C_enrichment_R.5mers.mark_adapters.txt	ENCFF283LHM	file_enrichment	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-42	Yes	Released	2020-11-23	ENCODE4			2054
chris-burge:APOBEC3C_enrichment_R.6mers.mark_adapters.txt	ENCFF065BGK	file_enrichment	RNA Bind-n-Seq	APOBEC3C	GSK3A-BGKcLV13-42	Yes	Released	2020-11-23	ENCODE4			2055

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
APOBEC3C_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		AKAP8L_input.fastq.gz	ENCODE4
APOBEC3C_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		AKAP8L_input.fastq.gz	ENCODE4
APOBEC3C_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		AKAP8L_input.fastq.gz	ENCODE4
APOBEC3C_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
APOBEC3C_5mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	APOBEC3C_20.fastq.gz,APOBEC3C_320.fastq.gz,APOBEC3C_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
APOBEC3C_6mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	APOBEC3C_20.fastq.gz,APOBEC3C_320.fastq.gz,APOBEC3C_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
APOBEC3C_6mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	APOBEC3C_20.fastq.gz,APOBEC3C_320.fastq.gz,APOBEC3C_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
APOBEC3C_enrichment_R.4mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	APOBEC3C_20.fastq.gz,APOBEC3C_320.fastq.gz,APOBEC3C_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
APOBEC3C_enrichment_R.5mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	APOBEC3C_20.fastq.gz,APOBEC3C_320.fastq.gz,APOBEC3C_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
APOBEC3C_enrichment_R.6mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	APOBEC3C_20.fastq.gz,APOBEC3C_320.fastq.gz,APOBEC3C_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
APOBEC3C_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
APOBEC3C_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
APOBEC3C_coomassie.pdf	pdf	document	RNA Bind-n-Seq	Burge Lab			ENCODE4