UBXN1

General Information

Gene Name       : UBXN1
Gene ID             : ENSG00000162191.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBXN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBXN1ENSG00000162191.1332.8479.7556.30ENCSR000AEF
HepG2UBXN1ENSG00000162191.1378.4341.0259.73ENCSR985KAT
K562UBXN1ENSG00000162191.13105.0494.7599.90ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBXN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBXN1 RNA is bound by 10 proteins.  







eCLIP assay for UBXN1 is not avaliable on ENCORE database.





10 proteins are bound to UBXN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr116244399662444051-3'-UTR,CDS,intron-Distal,intron-Proximal3.463536.54748K562PABPC4
chr116244637162446519-5'-UTR,CDS,intron-Distal,intron-Proximal3.376664.46344HepG2DDX3X
chr116244539762445459-5'-UTR,CDS,intron-Distal,intron-Proximal3.220589.84113K562UCHL5
chr116244640262446445-5'-UTR,intron-Distal,intron-Proximal3.649574.06757K562UCHL5
chr116244646962446541-5'-UTR,intron-Distal,intron-Proximal3.648967.03354K562DDX3X
chr116244636662446417-5'-UTR,CDS,intron-Distal4.310398.16459K562DDX3X
chr116244583062445883-CDS,intron-Distal,intron-Proximal4.439615.42080K562EFTUD2
chr116244505062445106-CDS,intron-Distal,intron-Proximal4.170468.82687K562UCHL5
chr116244494662445006-CDS,intron-Distal,intron-Proximal3.933745.64484HepG2PRPF8
chr116244504962445104-CDS,intron-Distal,intron-Proximal4.291993.60623K562APOBEC3C
chr116244547562445537-CDS,intron-Distal,intron-Proximal3.407729.52223K562PABPC4
chr116244619762446215-CDS,intron-Distal3.968754.84938K562DDX3X
chr116244598562446022-CDS,intron-Distal,intron-Proximal3.442975.17903K562UCHL5
chr116244633662446366-CDS,intron-Distal,intron-Proximal4.924637.97419K562DDX3X
chr116244619862446239-CDS,intron-Distal,intron-Proximal3.478663.22327HepG2AQR
chr116244528562445305-CDS,intron-Distal,intron-Proximal3.042515.51984K562UCHL5
chr116244525362445302-CDS,intron-Distal,intron-Proximal4.374723.86870K562APOBEC3C
chr116244505962445181-CDS,intron-Distal,intron-Proximal3.465955.76899HepG2EFTUD2
chr116244525162445303-CDS,intron-Distal,intron-Proximal3.738856.95618K562PUM1
chr116244508862445175-CDS,intron-Distal,intron-Proximal3.8411813.51121K562EFTUD2
chr116244553062445591-CDS,intron-Distal,intron-Proximal3.2820114.01110K562UCHL5
chr116244509662445163-CDS,intron-Distal,intron-Proximal4.1803910.90247K562SF3B4
chr116244444562444516-CDS,intron-Distal,intron-Proximal3.259588.05533K562SF3B4
chr116244547362445530-CDS,intron-Distal,intron-Proximal4.1619013.54973K562UCHL5
chr116244623962446328-intron-Distal,intron-Proximal5.044297.45424HepG2AQR
chr116244588362445947-intron-Distal,intron-Proximal5.908918.41916K562EFTUD2
chr116244488362444950-intron-Distal,intron-Proximal5.1583110.59102K562EFTUD2
chr116244463262444683-intron-Distal3.428485.38969K562U2AF2
chr116244490762444986-intron-Distal,intron-Proximal3.707605.35619K562AQR
chr116244511762445169-intron-Distal,intron-Proximal4.251115.64238K562PRPF8
chr116244462562444696-intron-Distal4.267665.60471HepG2U2AF2
chr116244579362445810-intron-Distal,intron-Proximal4.892343.70761K562AQR
chr116244576862445793-intron-Distal,intron-Proximal4.103314.15711K562AQR
chr116244489062444967-intron-Distal,intron-Proximal4.554358.54286K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBXN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBXN1 is not available on ENCORE database.

  • 69 RBPs can affect the levels of UBXN1.  








The Knockdown/knockout RNA-Seq assay for UBXN1 is not available on ENCORE database.





69 RBPs can affect the gene expression of UBXN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBXN1ENSG00000162191.9957.92330687.604400.478206.610205.75250HepG2ACO1
UBXN1ENSG00000162191.91630.899801074.818900.601505.071104.37800HepG2AKAP1
UBXN1ENSG00000162191.9983.025001156.87300-0.234902.091501.47910HepG2AUH
UBXN1ENSG00000162191.9873.54830566.979300.623504.102502.96360HepG2BCCIP
UBXN1ENSG00000162191.91109.31530800.682200.470302.294901.60220HepG2CNOT7
UBXN1ENSG00000162191.91159.683901479.48160-0.351402.676001.99810HepG2CPSF6
UBXN1ENSG00000162191.9994.49020821.227000.276102.399501.79320HepG2CELF1
UBXN1ENSG00000162191.91383.116101029.503300.425903.106702.44830HepG2DDX3X
UBXN1ENSG00000162191.9756.13450557.480200.439602.151001.46080HepG2DDX55
UBXN1ENSG00000162191.91160.444401680.06880-0.533802.745701.77140HepG2DDX59
UBXN1ENSG00000162191.91231.05760884.581200.476703.270802.60490HepG2DDX6
UBXN1ENSG00000162191.9665.16650491.575300.436202.195501.56170HepG2DNAJC21
UBXN1ENSG00000162191.9626.87110487.356200.363101.953001.38730HepG2DNAJC2
UBXN1ENSG00000162191.9764.28260548.414000.478702.284601.72840HepG2HNRNPU
UBXN1ENSG00000162191.9975.93160560.179800.8008011.084009.72360HepG2ILF2
UBXN1ENSG00000162191.9761.70620628.501400.277202.470401.50660HepG2KIF1C
UBXN1ENSG00000162191.91148.002201476.73780-0.363302.088501.37450HepG2LARP4
UBXN1ENSG00000162191.9790.250501143.25200-0.532805.423004.32260HepG2MSI2
UBXN1ENSG00000162191.91197.17010875.375400.451603.698502.81520HepG2NOL12
UBXN1ENSG00000162191.9955.36430542.785400.815605.815704.65380HepG2PARN
UBXN1ENSG00000162191.9677.67940868.06650-0.357203.422102.57110HepG2PRPF4
UBXN1ENSG00000162191.91129.75440887.199300.348603.750303.08260HepG2PUM1
UBXN1ENSG00000162191.91668.926201184.633000.494406.472505.22910HepG2RBM15
UBXN1ENSG00000162191.91632.892301110.226200.556508.935908.12640HepG2RBM22
UBXN1ENSG00000162191.9690.07160888.60970-0.364802.715902.04680HepG2RBM25
UBXN1ENSG00000162191.9921.51560600.201700.618506.623305.71800HepG2RPS19
UBXN1ENSG00000162191.9813.43040613.278200.407402.280201.30990HepG2RPS5
UBXN1ENSG00000162191.9290.59920425.28290-0.549403.004502.18960HepG2RRP9
UBXN1ENSG00000162191.9811.72730488.363100.732904.481303.69450HepG2SAFB2
UBXN1ENSG00000162191.91049.326201584.07040-0.594207.003705.92320HepG2SF3B1
UBXN1ENSG00000162191.9816.91280569.473800.520503.524202.81240HepG2SMN1
UBXN1ENSG00000162191.9823.62650527.768600.642003.895802.74210HepG2SMNDC1
UBXN1ENSG00000162191.9703.74610982.45330-0.481305.760605.14020HepG2SRSF1
UBXN1ENSG00000162191.91014.28490825.215100.297502.560501.95370HepG2SRSF5
UBXN1ENSG00000162191.9655.327201088.64300-0.7322014.2064013.22530HepG2SSB
UBXN1ENSG00000162191.91322.27110938.416700.494605.173804.36880HepG2SUCLG1
UBXN1ENSG00000162191.9753.49490537.660100.486803.148202.55570HepG2TRIM56
UBXN1ENSG00000162191.91139.95670816.560700.481203.601302.59170HepG2TUFM
UBXN1ENSG00000162191.9887.607001208.25560-0.444903.569002.85990HepG2U2AF1
UBXN1ENSG00000162191.9439.30840327.790700.422402.049301.39630HepG2UCHL5
UBXN1ENSG00000162191.9839.15640568.283000.562203.381002.20680HepG2XRCC6
UBXN1ENSG00000162191.91249.238301051.127200.249002.863602.30980HepG2ZNF622
UBXN1ENSG00000162191.94077.826003289.051000.310004.568103.87070K562AGGF1
UBXN1ENSG00000162191.91625.188801337.149000.281303.083001.48170K562AKAP1
UBXN1ENSG00000162191.94699.784203614.394900.378704.497803.17040K562AKAP8
UBXN1ENSG00000162191.94428.388803422.462000.371604.344003.52020K562AKAP8L
UBXN1ENSG00000162191.93719.096702412.202000.624509.864908.86150K562AQR
UBXN1ENSG00000162191.94824.434703682.467100.389607.683706.09300K562DKC1
UBXN1ENSG00000162191.91619.187901283.516400.335102.667601.35070K562DNAJC21
UBXN1ENSG00000162191.9948.047801215.64720-0.358702.287101.35740K562EIF3D
UBXN1ENSG00000162191.9201.18790706.23750-1.8116011.318909.69080K562G3BP2
UBXN1ENSG00000162191.92266.959902801.88170-0.305603.838802.50220K562GLRX3
UBXN1ENSG00000162191.92670.097902229.884400.259802.842901.93750K562HNRNPU
UBXN1ENSG00000162191.91586.654201078.443300.556902.628501.63760K562IGF2BP2
UBXN1ENSG00000162191.91416.055901096.641000.368702.703501.52920K562IGF2BP3
UBXN1ENSG00000162191.94654.711703631.893500.357902.983402.12500K562KIF1C
UBXN1ENSG00000162191.94337.493103476.773200.319003.546402.28160K562MAK16
UBXN1ENSG00000162191.92089.092402945.81540-0.4958012.2462010.68390K562MTPAP
UBXN1ENSG00000162191.93930.255602851.856700.462603.570702.53830K562NAA15
UBXN1ENSG00000162191.92229.476201734.082800.362403.276001.67640K562NUSAP1
UBXN1ENSG00000162191.91539.165901107.544100.474705.312003.37320K562PCBP1
UBXN1ENSG00000162191.91610.418601937.06680-0.266402.533001.76960K562POLR2G
UBXN1ENSG00000162191.91883.195101579.277400.253802.177701.38410K562PSIP1
UBXN1ENSG00000162191.96261.870103393.747500.8836016.2455014.96960K562PUS1
UBXN1ENSG00000162191.94474.088403307.023600.436002.624002.04480K562RBM15
UBXN1ENSG00000162191.91362.597001054.910600.369103.045302.15870K562RBM22
UBXN1ENSG00000162191.91375.883401839.65990-0.419103.559102.40990K562RPS3
UBXN1ENSG00000162191.91040.49670733.661100.504003.835502.82350K562SF3B4
UBXN1ENSG00000162191.9508.25490752.36760-0.565904.627002.41830K562SND1
UBXN1ENSG00000162191.92221.391103308.88490-0.5749019.2220017.09230K562SRPK2
UBXN1ENSG00000162191.91437.780701078.979500.414102.065901.44440K562SRSF1
UBXN1ENSG00000162191.91503.651801019.208600.560903.353802.17890K562SRSF5
UBXN1ENSG00000162191.92024.742201091.829000.890908.160306.86440K562TARDBP
UBXN1ENSG00000162191.91606.071401053.236700.608607.765806.28890K562TIA1
UBXN1ENSG00000162191.91672.305601033.937700.693606.799404.89500K562TRA2A
UBXN1ENSG00000162191.9479.51780706.45880-0.559002.503801.73900K562U2AF2
UBXN1ENSG00000162191.92515.529303088.03570-0.295805.323804.18690K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBXN1 is not available on ENCORE database.





24 RBPs can affect the splicing of UBXN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBXN1ENSG00000162191.9chr11-624442846244447762443975624441116244498962445106-0.117000.003480.05438excludedK562U2AF2
A3SSUBXN1ENSG00000162191.9chr11-6244397562444200624439756244411162444284624445180.120000.000000.00000longerK562AQR
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.200000.000160.02477includedHepG2DDX59
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.097000.007210.08434includedK562SF3B4
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.107000.002550.04692includedHepG2PCBP2
RIUBXN1ENSG00000162191.9chr11-6244498962445304624449896244510662445252624453040.083000.000000.00000includedK562PUS1
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.175000.000000.00000includedK562PUS1
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.151000.000000.00000includedK562PUS1
RIUBXN1ENSG00000162191.9chr11-6244616162446537624461616244621562446336624465370.095000.000190.00355includedHepG2SF3A3
RIUBXN1ENSG00000162191.9chr11-6244498962445304624449896244510662445252624453040.095000.000000.00013includedHepG2SF3A3
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.125000.005670.05533includedHepG2SF3A3
RIUBXN1ENSG00000162191.9chr11-624442846244530462444284624444776244498962445304-0.071000.000270.00972excludedK562HNRNPC
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.267000.000500.04608includedK562TAF15
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.310000.000070.00096includedHepG2U2AF2
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.069000.005570.09393includedHepG2UCHL5
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.069000.001680.02108includedK562AGGF1
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.086000.000000.00000includedK562AGGF1
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.059000.009820.09336includedK562PRPF8
RIUBXN1ENSG00000162191.9chr11-6244616162446537624461616244621562446336624465370.071000.000940.02416includedHepG2SRSF1
RIUBXN1ENSG00000162191.9chr11-6244498962445304624449896244510662445252624453040.072000.000000.00023includedK562RBM22
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.068000.003610.06470includedK562RBM22
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.073000.000650.00762includedK562AKAP8L
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.099000.000000.00000includedK562AKAP8L
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.063000.000120.00214includedHepG2TAF15
RIUBXN1ENSG00000162191.9chr11-6244616162446537624461616244621562446336624465370.089000.000010.00018includedHepG2U2AF1
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.173000.000000.00001includedHepG2U2AF1
RIUBXN1ENSG00000162191.9chr11-6244498962445304624449896244510662445252624453040.061000.000000.00000includedK562RBM15
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.070000.001150.01434includedK562RBM15
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.065000.000000.00003includedK562RBM15
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.256000.000580.01417includedK562U2AF1
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.136000.004710.06965includedK562U2AF1
RIUBXN1ENSG00000162191.9chr11-624449896244530462444989624450356244525262445304-0.084000.005670.07857excludedK562U2AF1
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.425000.000230.00476includedK562U2AF2
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.314000.000000.00000includedK562U2AF2
RIUBXN1ENSG00000162191.9chr11-6244498962445304624449896244510662445252624453040.063000.000350.00903includedHepG2TIAL1
RIUBXN1ENSG00000162191.9chr11-624442846244530462444284624444776244498962445304-0.110000.000030.00884excludedK562HNRNPL
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.140000.000000.00000includedHepG2SF3B4
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.080000.000650.01484includedHepG2FUBP3
RIUBXN1ENSG00000162191.9chr11-6244498962445304624449896244510662445252624453040.052000.000570.00789includedHepG2RBM22
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.107000.000010.00033includedHepG2SRSF9
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.056000.000280.01033includedHepG2PTBP1
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.086000.001520.02075includedK562UTP18
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.069000.000000.00002includedK562UTP18
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.114000.001720.09114includedK562SAFB
RIUBXN1ENSG00000162191.9chr11-6244616162446537624461616244621562446336624465370.157000.000000.00000includedK562AQR
RIUBXN1ENSG00000162191.9chr11-6244498962445304624449896244510662445252624453040.070000.000000.00001includedK562AQR
RIUBXN1ENSG00000162191.9chr11-6244428462445304624442846244447762444989624453040.060000.000000.00001includedK562AQR
RIUBXN1ENSG00000162191.9chr11-6244396962444477624439696244411162444284624444770.169000.000000.00000includedK562AQR
RIUBXN1ENSG00000162191.9chr11-624439696244447762443969624441326244428462444477-0.230000.003760.02215excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBXN1 is not avaliable on ENCORE database.