CTD-2576D5.4

General Information

Gene Name : CTD-2576D5.4
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTD-2576D5.4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTD-2576D5.4 is not avaliable on ENCORE database.

Proteins bound to RNA

CTD-2576D5.4 RNA is bound by 1 proteins.

eCLIP assay for CTD-2576D5.4 is not avaliable on ENCORE database.

1 proteins are bound to CTD-2576D5.4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	17231358	17231424	+	intron-Proximal	3.56759	4.30683	K562	BUD13
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTD-2576D5.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTD-2576D5.4 is not available on ENCORE database.
17 RBPs can affect the levels of CTD-2576D5.4.

The Knockdown/knockout RNA-Seq assay for CTD-2576D5.4 is not available on ENCORE database.

17 RBPs can affect the gene expression of CTD-2576D5.4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTD-2576D5.4	ENSG00000261448.1	187.76830	286.13820	-0.60780	2.73650	2.15110	K562	AQR
CTD-2576D5.4	ENSG00000261448.1	350.68800	495.93970	-0.50000	3.08200	1.52740	K562	DDX19B
CTD-2576D5.4	ENSG00000261448.1	165.11870	104.35970	0.66180	2.67950	1.84470	K562	FIP1L1
CTD-2576D5.4	ENSG00000261448.1	80.20240	200.39310	-1.32110	9.49790	8.45670	K562	FXR1
CTD-2576D5.4	ENSG00000261448.1	40.87810	109.54680	-1.42210	4.26520	3.34430	K562	G3BP2
CTD-2576D5.4	ENSG00000261448.1	276.23040	174.48970	0.66260	3.36230	2.53100	K562	GRSF1
CTD-2576D5.4	ENSG00000261448.1	88.17790	180.61480	-1.03440	4.92710	3.22940	K562	HNRNPK
CTD-2576D5.4	ENSG00000261448.1	236.97760	141.46260	0.74420	3.85000	2.91480	K562	HSPD1
CTD-2576D5.4	ENSG00000261448.1	87.01040	190.08690	-1.12740	7.12420	5.74720	K562	MAGOH
CTD-2576D5.4	ENSG00000261448.1	189.71660	118.49680	0.67890	3.06710	2.19670	K562	PPIG
CTD-2576D5.4	ENSG00000261448.1	64.54950	184.68950	-1.51660	11.39880	10.11130	K562	PTBP1
CTD-2576D5.4	ENSG00000261448.1	200.89040	290.56430	-0.53240	2.06850	1.36310	K562	PUF60
CTD-2576D5.4	ENSG00000261448.1	308.97860	436.16070	-0.49740	2.64650	2.11190	K562	PUS1
CTD-2576D5.4	ENSG00000261448.1	70.36630	177.03550	-1.33110	8.47780	6.89070	K562	RBM22
CTD-2576D5.4	ENSG00000261448.1	121.51880	186.31550	-0.61660	2.61700	1.55730	K562	NELFE
CTD-2576D5.4	ENSG00000261448.1	41.66880	105.93010	-1.34610	4.95650	3.50450	K562	SAFB
CTD-2576D5.4	ENSG00000261448.1	37.17560	119.25970	-1.68170	8.53400	7.08940	K562	SYNCRIP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTD-2576D5.4 is not available on ENCORE database.

12 RBPs can affect the splicing of CTD-2576D5.4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17231372	17231471			17228360	17228407	17232098	17232593	-0.35700	0.00007	0.00218	excluded	K562	SRSF1
SE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17231372	17231471			17228360	17228407	17232098	17232593	-0.29500	0.00037	0.05915	excluded	K562	MATR3
SE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17231372	17231471			17228360	17228407	17232098	17232593	-0.17500	0.00004	0.01475	excluded	K562	LARP4
SE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207			17228360	17228407	17232098	17232593	0.18200	0.00046	0.07930	included	K562	APOBEC3C
SE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207			17228360	17228407	17232098	17232593	0.17400	0.00017	0.08938	included	K562	PUM2
SE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207			17228360	17228407	17232098	17232593	0.20100	0.00048	0.07296	included	K562	EIF4G2
SE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17231372	17231471			17228360	17228407	17232098	17232593	-0.30700	0.00017	0.00945	excluded	K562	TARDBP
SE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17231372	17231471			17228360	17228407	17232098	17232593	-0.22600	0.00132	0.02429	excluded	K562	HNRNPC
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207	17231372	17231471	17228360	17228407	17232098	17232593	-0.08500	0.00044	0.03577	2included	K562	LARP4
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207	17231372	17231471	17228360	17228407	17232098	17232593	-0.06700	0.00355	0.07795	2included	K562	RBM15
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230026	17230207	17231372	17231471	17228360	17228407	17232098	17232593	0.13600	0.00078	0.02213	1included	K562	TARDBP
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207	17231372	17231471	17228360	17228407	17232098	17232593	0.16400	0.00128	0.03235	1included	K562	TARDBP
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207	17231372	17231471	17228360	17228407	17232098	17232593	0.15200	0.00026	0.05851	1included	K562	EIF4G2
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207	17231372	17231471	17228360	17228407	17232098	17232593	0.17400	0.00003	0.01323	1included	K562	PUM2
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207	17231372	17231471	17228360	17228407	17232098	17232593	0.17400	0.00005	0.00880	1included	K562	PUM1
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207	17231372	17231471	17228360	17228407	17232098	17232593	0.22500	0.00008	0.03268	1included	K562	APOBEC3C
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207	17231372	17231471	17228360	17228407	17232098	17232593	0.26000	0.00059	0.08042	1included	K562	HNRNPM
MXE	CTD-2576D5.4	ENSG00000261448.1	chr16	+	17230053	17230207	17231372	17231471	17228360	17228407	17232098	17232593	0.19400	0.00086	0.05157	1included	K562	HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTD-2576D5.4

General Information

Functions

Localization

Domains (AlphaFold: CTD-2576D5.4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTD-2576D5.4 is not avaliable on ENCORE database.

1 proteins are bound to CTD-2576D5.4 RNA:

eCLIP assay for CTD-2576D5.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTD-2576D5.4 is not available on ENCORE database.

17 RBPs can affect the gene expression of CTD-2576D5.4 :

The Knockdown/knockout RNA-Seq assay for CTD-2576D5.4 is not available on ENCORE database.

12 RBPs can affect the splicing of CTD-2576D5.4 :

The Knockdown/knockout RNA-Seq assay for CTD-2576D5.4 is not avaliable on ENCORE database.