CDKN3

General Information

Gene Name       : CDKN3
Gene ID             : ENSG00000100526.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDKN3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDKN3ENSG00000100526.1974.2875.7475.01ENCSR000AEF
HepG2CDKN3ENSG00000100526.1964.8294.5179.66ENCSR985KAT
K562CDKN3ENSG00000100526.1949.7056.2152.95ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDKN3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDKN3 RNA is bound by 4 proteins.  







eCLIP assay for CDKN3 is not avaliable on ENCORE database.





4 proteins are bound to CDKN3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr145488672054886804+3'-UTR,CDS3.431675.76576K562PABPC4
chr145488459954884616+3'-UTR,CDS3.088076.43544K562YBX3
chr145488457954884599+3'-UTR,CDS3.317456.18351K562YBX3
chr145488681654886889+3'-UTR5.992989.80245K562PABPC4
chr145488456454884629+3'-UTR,CDS,intron-Proximal3.282973.01032HepG2LARP4
chr145486371054863796+5'-UTR,CDS,intron-Proximal4.003257.37356K562DDX3X
chr145488261554882649+CDS,intron-Distal,intron-Proximal4.709505.64683K562YBX3
chr145488456554884579+CDS,intron-Proximal4.474095.20509K562YBX3
chr145487828754878305+CDS,intron-Distal3.721645.57640K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDKN3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDKN3 is not available on ENCORE database.

  • 131 RBPs can affect the levels of CDKN3.  








The Knockdown/knockout RNA-Seq assay for CDKN3 is not available on ENCORE database.





131 RBPs can affect the gene expression of CDKN3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDKN3ENSG00000100526.15199.02310356.49870-0.841008.278807.34140HepG2ACO1
CDKN3ENSG00000100526.15177.33930317.64820-0.840904.455103.80170HepG2AKAP1
CDKN3ENSG00000100526.15191.01070307.73970-0.688103.289902.16070HepG2AKAP8
CDKN3ENSG00000100526.15277.57230358.22640-0.368002.119501.43570HepG2AKAP8L
CDKN3ENSG00000100526.15143.50720303.20480-1.079204.481502.28700HepG2APOBEC3C
CDKN3ENSG00000100526.15104.41470262.83690-1.331809.481708.08760HepG2ASCC1
CDKN3ENSG00000100526.15255.43810669.81460-1.3908027.6068025.83800HepG2AUH
CDKN3ENSG00000100526.15125.88760316.66900-1.3308010.214408.62630HepG2BCLAF1
CDKN3ENSG00000100526.1530.63070578.79230-4.2400058.2223056.20600HepG2BOP1
CDKN3ENSG00000100526.15293.83230669.84680-1.1888018.0323016.38370HepG2CALR
CDKN3ENSG00000100526.15586.01870857.09910-0.548503.427802.33160HepG2CCAR1
CDKN3ENSG00000100526.15146.55510249.71000-0.768803.835902.93340HepG2CIRBP
CDKN3ENSG00000100526.15102.37750356.48460-1.7999027.8212026.20600HepG2CKAP4
CDKN3ENSG00000100526.1576.92400324.63770-2.0773017.5489015.68400HepG2CNOT7
CDKN3ENSG00000100526.15212.27310531.34250-1.3237015.4102013.94720HepG2CPSF6
CDKN3ENSG00000100526.15311.45040569.06900-0.8696011.2399010.11700HepG2CELF1
CDKN3ENSG00000100526.15350.80490611.89500-0.8026012.2843010.90050HepG2DAZAP1
CDKN3ENSG00000100526.15148.61720292.79630-0.978307.088006.05400HepG2DDX21
CDKN3ENSG00000100526.15172.23530286.51310-0.734204.551003.36740HepG2DDX24
CDKN3ENSG00000100526.15138.59760304.30380-1.134607.976006.96350HepG2DDX3X
CDKN3ENSG00000100526.15376.97210530.86680-0.493903.173701.79180HepG2DDX47
CDKN3ENSG00000100526.15184.89540358.30460-0.954505.913804.83590HepG2DDX55
CDKN3ENSG00000100526.15260.58730603.38520-1.211308.621606.95250HepG2DDX59
CDKN3ENSG00000100526.15475.00130638.30410-0.426302.786901.77150HepG2DDX5
CDKN3ENSG00000100526.15125.27460261.35420-1.060906.110105.22050HepG2DDX6
CDKN3ENSG00000100526.15212.87360368.20510-0.790503.390402.61760HepG2DNAJC21
CDKN3ENSG00000100526.15235.70190339.19520-0.525202.664301.57290HepG2EFTUD2
CDKN3ENSG00000100526.15126.88000269.61360-1.087406.706305.00830HepG2AGO1
CDKN3ENSG00000100526.1535.98710251.29480-2.8038026.0326024.34520HepG2EIF2S1
CDKN3ENSG00000100526.15152.97520330.28850-1.110407.560906.13220HepG2EIF3D
CDKN3ENSG00000100526.15185.21970277.73390-0.584502.571501.95470HepG2EIF4A3
CDKN3ENSG00000100526.15436.08890603.66670-0.469104.295403.29550HepG2EIF4G1
CDKN3ENSG00000100526.15277.84050578.27500-1.0575011.8744010.26240HepG2EIF4G2
CDKN3ENSG00000100526.15289.39630769.00420-1.4099030.9952029.36590HepG2ETF1
CDKN3ENSG00000100526.15179.93020279.01890-0.632903.519002.25360HepG2FASTKD2
CDKN3ENSG00000100526.15187.17050298.24070-0.672103.362101.96940HepG2FKBP4
CDKN3ENSG00000100526.15185.40450532.29560-1.521608.414406.65850HepG2FTO
CDKN3ENSG00000100526.15510.79480280.150600.866407.160306.08330HepG2FXR1
CDKN3ENSG00000100526.15149.86270259.91820-0.794404.171703.36450HepG2G3BP1
CDKN3ENSG00000100526.15232.45110602.26240-1.3735015.8603014.44870HepG2GPKOW
CDKN3ENSG00000100526.15119.70670300.55990-1.328109.128607.12400HepG2GRSF1
CDKN3ENSG00000100526.15237.00580371.73360-0.649302.694802.05600HepG2HNRNPA1
CDKN3ENSG00000100526.15440.93180562.34610-0.350902.467701.57810HepG2HNRNPA2B1
CDKN3ENSG00000100526.15225.87870413.51480-0.872404.630003.74820HepG2HNRNPC
CDKN3ENSG00000100526.15380.07820599.61020-0.657705.287004.33540HepG2HNRNPF
CDKN3ENSG00000100526.15357.95030557.39140-0.638907.483206.42370HepG2HNRNPL
CDKN3ENSG00000100526.15292.25540574.75520-0.975709.539908.45120HepG2HNRNPLL
CDKN3ENSG00000100526.15365.94020590.45450-0.690204.193503.31800HepG2IGF2BP1
CDKN3ENSG00000100526.1581.42110264.21450-1.6982013.6222012.25190HepG2IGF2BP2
CDKN3ENSG00000100526.15434.25090309.547200.488302.416701.31940HepG2KHDRBS1
CDKN3ENSG00000100526.15591.98950905.20790-0.612704.250203.21570HepG2LARP4
CDKN3ENSG00000100526.15216.14310345.68510-0.677502.669201.63530HepG2METAP2
CDKN3ENSG00000100526.15372.11810586.29740-0.655902.909401.91230HepG2MTPAP
CDKN3ENSG00000100526.15469.93190606.75350-0.368702.678101.92740HepG2NOL12
CDKN3ENSG00000100526.15165.35130328.99380-0.992504.507103.09000HepG2NONO
CDKN3ENSG00000100526.15322.26690509.67090-0.661304.748603.77840HepG2NSUN2
CDKN3ENSG00000100526.15211.94120318.06490-0.585703.327001.57380HepG2NUP35
CDKN3ENSG00000100526.15121.23170296.78570-1.291707.660706.13330HepG2PABPC1
CDKN3ENSG00000100526.15116.95600256.95020-1.135507.430406.25860HepG2PABPC4
CDKN3ENSG00000100526.15120.91430327.28570-1.4366011.093409.22390HepG2PCBP2
CDKN3ENSG00000100526.15351.21300449.93940-0.357402.414701.68610HepG2PRPF4
CDKN3ENSG00000100526.1588.56280276.42850-1.6421013.0262011.45580HepG2PRPF8
CDKN3ENSG00000100526.15260.05960579.19760-1.1552014.8095013.57740HepG2PUF60
CDKN3ENSG00000100526.15353.87290614.84180-0.7970011.8424010.79590HepG2PUM1
CDKN3ENSG00000100526.15389.04370614.39400-0.659206.507805.49500HepG2PUM2
CDKN3ENSG00000100526.15145.71080312.23160-1.099506.220105.33560HepG2QKI
CDKN3ENSG00000100526.15100.50720642.75200-2.6770064.0034062.16020HepG2RBM22
CDKN3ENSG00000100526.15161.95050283.34730-0.807005.388404.47580HepG2RBM25
CDKN3ENSG00000100526.15301.24050400.83880-0.412102.305901.40870HepG2RBM27
CDKN3ENSG00000100526.15498.43820313.613900.668303.806902.01510HepG2RBM47
CDKN3ENSG00000100526.15503.52940320.806900.650305.585304.85910HepG2NELFE
CDKN3ENSG00000100526.15493.23510298.745000.723306.951306.03910HepG2RECQL
CDKN3ENSG00000100526.15181.23050645.78210-1.8332024.4071022.80460HepG2RPLP0
CDKN3ENSG00000100526.15190.93160310.25580-0.700403.207302.19170HepG2RPS10
CDKN3ENSG00000100526.15102.85070321.37500-1.6437017.6974016.34280HepG2RPS19
CDKN3ENSG00000100526.15212.67650369.64900-0.797505.945304.79690HepG2RPS2
CDKN3ENSG00000100526.15109.72340326.19020-1.5718013.0206011.34130HepG2RPS3A
CDKN3ENSG00000100526.1545.80890273.44750-2.5776023.8928022.02710HepG2RRP9
CDKN3ENSG00000100526.15211.02420322.56610-0.612203.184702.17370HepG2SERBP1
CDKN3ENSG00000100526.15287.33570568.86190-0.985308.079306.93260HepG2SF3B1
CDKN3ENSG00000100526.15198.36310300.14600-0.597503.334502.69270HepG2SF3B4
CDKN3ENSG00000100526.15359.68310555.35610-0.626707.077206.03810HepG2SLBP
CDKN3ENSG00000100526.15257.99930651.80560-1.337102.607901.34950HepG2SNRNP200
CDKN3ENSG00000100526.15251.46040632.97010-1.3318011.6240010.03600HepG2SNRNP70
CDKN3ENSG00000100526.15247.30770725.97680-1.5536035.4885034.22510HepG2SRFBP1
CDKN3ENSG00000100526.15493.59460313.266500.655805.770205.14950HepG2SRSF1
CDKN3ENSG00000100526.15419.79560612.18890-0.544303.142702.06660HepG2SRSF3
CDKN3ENSG00000100526.15278.86180571.87080-1.0361015.4839014.17070HepG2SRSF5
CDKN3ENSG00000100526.15250.10880589.06370-1.2359010.002008.82160HepG2SRSF7
CDKN3ENSG00000100526.15151.96690254.84100-0.745805.056304.35130HepG2SRSF9
CDKN3ENSG00000100526.15350.44500630.34070-0.846905.913905.21800HepG2SSB
CDKN3ENSG00000100526.15497.81430333.833200.576403.593002.14490HepG2SSRP1
CDKN3ENSG00000100526.15539.79560650.37680-0.268902.050401.49950HepG2SUCLG1
CDKN3ENSG00000100526.15221.64570338.12210-0.609302.664801.36500HepG2SUGP2
CDKN3ENSG00000100526.1592.23080356.69410-1.9514018.9034017.40790HepG2SUPV3L1
CDKN3ENSG00000100526.15223.09570560.35620-1.3287014.2068012.76920HepG2TARDBP
CDKN3ENSG00000100526.1575.05970239.08400-1.6714011.9821010.20690HepG2TFIP11
CDKN3ENSG00000100526.15153.70270399.03600-1.376408.233607.45450HepG2TIAL1
CDKN3ENSG00000100526.15208.94610402.72360-0.946704.094903.43640HepG2TRIM56
CDKN3ENSG00000100526.15255.24180565.10060-1.146606.792605.81960HepG2U2AF1
CDKN3ENSG00000100526.15146.73370760.01260-2.372804.629203.33150HepG2U2AF2
CDKN3ENSG00000100526.15344.64100598.93930-0.797305.582104.36680HepG2UBE2L3
CDKN3ENSG00000100526.15117.28470210.71520-0.845304.282903.33780HepG2UCHL5
CDKN3ENSG00000100526.1596.23460337.03790-1.8083022.9973021.37010HepG2UPF1
CDKN3ENSG00000100526.15216.59970346.44390-0.677605.246503.84570HepG2UTP18
CDKN3ENSG00000100526.15235.96100325.40010-0.463702.169201.62530HepG2UTP3
CDKN3ENSG00000100526.15186.17380370.68020-0.9935010.740109.83810HepG2ZNF622
CDKN3ENSG00000100526.15956.85920789.454000.277402.437801.89960K562AGGF1
CDKN3ENSG00000100526.151049.92240821.463600.353902.719702.07220K562AKAP8L
CDKN3ENSG00000100526.15593.06600810.57480-0.450803.381402.74590K562AQR
CDKN3ENSG00000100526.151158.98160861.915100.427105.020703.74990K562ATP5C1
CDKN3ENSG00000100526.15691.853801001.83820-0.534102.680101.64050K562CNOT7
CDKN3ENSG00000100526.15722.70560953.51560-0.399804.192002.80730K562CPEB4
CDKN3ENSG00000100526.15511.79060651.31560-0.347802.180101.47580K562CPSF6
CDKN3ENSG00000100526.15517.01790986.54640-0.9322019.2272017.66090K562DDX47
CDKN3ENSG00000100526.151060.82170883.947300.263002.225301.45100K562DKC1
CDKN3ENSG00000100526.15166.80730306.68940-0.878605.687304.34900K562EFTUD2
CDKN3ENSG00000100526.15118.73160328.40710-1.4678012.3720010.01080K562EIF3D
CDKN3ENSG00000100526.15300.87450405.95430-0.432202.706301.91800K562EIF3G
CDKN3ENSG00000100526.15274.29240401.18900-0.548603.468302.55330K562EIF4A3
CDKN3ENSG00000100526.15783.797501030.22950-0.394404.326003.16040K562EIF4G2
CDKN3ENSG00000100526.15383.65470519.02430-0.436002.997001.67930K562EXOSC5
CDKN3ENSG00000100526.15982.26780645.416100.605806.107004.81530K562FIP1L1
CDKN3ENSG00000100526.15423.05790561.64460-0.408802.239201.42140K562FTO
CDKN3ENSG00000100526.15674.85740470.873400.519102.979802.24250K562G3BP2
CDKN3ENSG00000100526.15472.27830621.86290-0.397002.549401.78540K562GPKOW
CDKN3ENSG00000100526.15340.77000559.58070-0.715506.425305.55270K562HNRNPC
CDKN3ENSG00000100526.15612.75890891.59900-0.541105.410803.87650K562HNRNPL
CDKN3ENSG00000100526.15748.72770530.830400.496103.220702.21140K562HNRNPM
CDKN3ENSG00000100526.15435.45490564.73080-0.375002.640301.76730K562HNRNPU
CDKN3ENSG00000100526.151130.89210875.094200.369902.579901.80950K562HSPD1
CDKN3ENSG00000100526.151119.84540871.774600.361202.879702.03600K562KIF1C
CDKN3ENSG00000100526.15386.12110530.94950-0.459502.118601.31350K562KRR1
CDKN3ENSG00000100526.15418.26680555.30020-0.408802.699701.87030K562MAGOH
CDKN3ENSG00000100526.151067.77980834.505800.355502.335201.37530K562MAK16
CDKN3ENSG00000100526.151229.10340976.608300.331702.631401.74820K562MBNL1
CDKN3ENSG00000100526.15503.92530702.76930-0.479803.403402.51130K562MTPAP
CDKN3ENSG00000100526.15586.97430780.89390-0.411804.913003.95830K562NSUN2
CDKN3ENSG00000100526.15775.60600542.688800.515104.986703.11310K562PCBP1
CDKN3ENSG00000100526.15221.84970494.12440-1.1553012.6053010.42500K562PCBP2
CDKN3ENSG00000100526.15931.91590732.626500.347002.247001.50900K562PPIG
CDKN3ENSG00000100526.151101.11380814.659200.434603.328302.74140K562PUS1
CDKN3ENSG00000100526.151029.98290793.768700.375703.656602.98840K562RBM15
CDKN3ENSG00000100526.15351.71640517.44090-0.557004.011102.98230K562RBM22
CDKN3ENSG00000100526.15331.76940457.86440-0.464703.033701.99230K562RCC2
CDKN3ENSG00000100526.15501.73940305.173800.717204.345002.67310K562RRP9
CDKN3ENSG00000100526.15407.05000770.46260-0.9205015.4332013.61960K562SF3A3
CDKN3ENSG00000100526.15251.93120489.70060-0.9589011.421909.61390K562SF3B4
CDKN3ENSG00000100526.15649.41060789.34830-0.281502.480701.58910K562SRPK2
CDKN3ENSG00000100526.15380.05420528.85320-0.476703.363902.58930K562SRSF1
CDKN3ENSG00000100526.15360.01460482.58040-0.422702.213201.38540K562TIAL1
CDKN3ENSG00000100526.15323.09380456.51380-0.498702.676901.60490K562U2AF1
CDKN3ENSG00000100526.15311.76060471.45180-0.596704.917003.84780K562U2AF2
CDKN3ENSG00000100526.15663.64300827.99400-0.319203.045702.29280K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDKN3 is not available on ENCORE database.





19 RBPs can affect the splicing of CDKN3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDKN3ENSG00000100526.15chr14+548666165486669454863720548637955486824154868297-0.244000.003490.05619excludedK562SF3B4
SECDKN3ENSG00000100526.15chr14+548826165488264854878201548784245488456554884669-0.236000.000000.00000excludedK562SF3B4
SECDKN3ENSG00000100526.15chr14+548666115486669454863696548637955486824154868297-0.188000.001680.08763excludedHepG2RBM22
SECDKN3ENSG00000100526.15chr14+548666115486669454863672548637955486824154868297-0.409000.000160.00290excludedHepG2U2AF2
SECDKN3ENSG00000100526.15chr14+548826165488264854878201548784245488456554884669-0.099000.000000.00001excludedK562AQR
SECDKN3ENSG00000100526.15chr14+548826165488264854878201548784245488456554884669-0.114000.000180.02017excludedK562SUPV3L1
SECDKN3ENSG00000100526.15chr14+548666115486669454863672548637955486824154868297-0.211000.000030.00079excludedK562PUS1
SECDKN3ENSG00000100526.15chr14+548826165488264854878201548784245488456554884669-0.060000.000300.06364excludedK562GPKOW
SECDKN3ENSG00000100526.15chr14+5486661154866694548636725486379554868241548682970.184000.001680.06153includedHepG2MATR3
SECDKN3ENSG00000100526.15chr14+548666115486669454863672548637955486824154868297-0.282000.000490.01271excludedK562U2AF1
SECDKN3ENSG00000100526.15chr14+548826165488264854878201548784245488456554884669-0.195000.000000.00007excludedK562U2AF1
SECDKN3ENSG00000100526.15chr14+5486661154866694548636725486379554868241548682970.168000.001320.08052includedHepG2HNRNPL
SECDKN3ENSG00000100526.15chr14+548826165488264854878201548784245488456554884669-0.100000.000000.00001excludedHepG2SF3A3
SECDKN3ENSG00000100526.15chr14+5486661154866694548636725486379554868241548682970.229000.000460.03805includedHepG2IGF2BP3
SECDKN3ENSG00000100526.15chr14+548826165488264854878201548784245488456554884669-0.096000.000090.02067excludedK562RBM22
SECDKN3ENSG00000100526.15chr14+548666115486669454863672548637955486824154868297-0.360000.000000.00018excludedK562U2AF2
SECDKN3ENSG00000100526.15chr14+548826165488264854878201548784245488456554884669-0.166000.000000.00007excludedK562U2AF2
SECDKN3ENSG00000100526.15chr14+548826165488264854878201548784245488456554884669-0.099000.000000.00002excludedK562SF3B1
SECDKN3ENSG00000100526.15chr14+5488493154885024548845655488466954886709548869360.056000.000080.09584includedK562DDX55
SECDKN3ENSG00000100526.15chr14+548666115486669454863672548637955486824154868297-0.329000.000000.00054excludedK562HNRNPK
SECDKN3ENSG00000100526.15chr14+548826165488264854878250548784245488456554884669-0.099000.000050.00407excludedK562HNRNPK
SECDKN3ENSG00000100526.15chr14+5486661154866694548636725486379554868241548682970.243000.000080.01948includedHepG2KHSRP
MXECDKN3ENSG00000100526.15chr14+5487546254875507548782015487842454868241548682975488456554884669-0.274000.000000.000002includedK562SF3B1
MXECDKN3ENSG00000100526.15chr14+54878201548784245488261654882648548754625487550754884565548846690.128000.005290.037701includedK562AQR
MXECDKN3ENSG00000100526.15chr14+54878250548784245488261654882648548754625487550754884565548846690.147000.000000.000011includedK562AQR
MXECDKN3ENSG00000100526.15chr14+5486661154866694548754625487550754863672548637955487820154878424-0.139000.004220.031192includedK562AQR
MXECDKN3ENSG00000100526.15chr14+5486824154868297548782015487842454866611548666945488456554884669-0.174000.000010.000112includedK562AQR
MXECDKN3ENSG00000100526.15chr14+54878250548784245488261654882648548754625487550754884565548846690.073000.001390.065571includedK562UTP18
MXECDKN3ENSG00000100526.15chr14+54878250548784245488261654882648548754625487550754884565548846690.158000.002920.070161includedK562EFTUD2
MXECDKN3ENSG00000100526.15chr14+54878250548784245488261654882648548754625487550754884565548846690.073000.000510.086981includedK562EXOSC5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDKN3 is not avaliable on ENCORE database.