SNRPF

General Information

Gene Name       : SNRPF
Gene ID             : ENSG00000139343.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNRPF)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNRPFENSG00000139343.1042.1952.3947.29ENCSR000AEF
HepG2SNRPFENSG00000139343.1075.1982.4278.81ENCSR985KAT
K562SNRPFENSG00000139343.1066.0562.9764.51ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNRPF is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNRPF RNA is bound by 18 proteins.  







eCLIP assay for SNRPF is not avaliable on ENCORE database.





18 proteins are bound to SNRPF RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr129625981396259890+3'-UTR,CDS,intron-Distal4.421745.75263HepG2LARP4
chr129625977996259901+3'-UTR,CDS,intron-Distal,intron-Proximal3.3060910.52628K562LARP4
chr129625978296259894+3'-UTR,CDS,intron-Distal,intron-Proximal5.0474315.00117K562APOBEC3C
chr129625977996259872+3'-UTR,CDS,intron-Distal,intron-Proximal3.150354.61701K562ZNF622
chr129625283396252855+5'-UTR,CDS,intron-Proximal4.709956.16046K562LIN28B
chr129625283596252855+5'-UTR,CDS,intron-Proximal3.269426.99831K562FTO
chr129625274296252824+5'-UTR4.1994528.93435K562RPS3
chr129625273996252821+5'-UTR3.7850533.72157K562GEMIN5
chr129625281896252833+5'-UTR4.251184.72426K562LIN28B
chr129625274596252823+5'-UTR5.5981715.10927K562EIF3G
chr129625274496252816+5'-UTR3.960079.00657K562XRCC6
chr129625274296252840+5'-UTR4.26734400.00000K562DDX3X
chr129625282196252855+5'-UTR,CDS,intron-Proximal3.6417110.94974K562GEMIN5
chr129625274396252855+5'-UTR,CDS,intron-Proximal5.7886119.88200K562DROSHA
chr129625284096252855+5'-UTR,CDS,intron-Proximal3.8382650.48321K562DDX3X
chr129625274396252855+5'-UTR,CDS,intron-Proximal4.0824525.37610HepG2DDX3X
chr129625910096259152+CDS,intron-Distal,intron-Proximal3.295325.22473K562APOBEC3C
chr129625493996255056+CDS,intron-Proximal4.391545.42420K562NOLC1
chr129625499096255071+CDS3.600716.01570HepG2LARP4
chr129625500296255066+CDS6.5608014.42024HepG2SUB1
chr129625500596255056+CDS4.775277.70257K562RPS3
chr129625502196255097+CDS,intron-Proximal3.123453.01994K562BUD13
chr129625501296255118+CDS,intron-Proximal3.932395.43815HepG2PRPF8
chr129625494496254990+CDS,intron-Proximal3.265816.46594HepG2LARP4
chr129625494596254969+CDS,intron-Proximal3.5251149.97749K562DDX3X
chr129625908896259230+CDS,intron-Distal,intron-Proximal3.164156.13643K562AQR
chr129625915296259166+CDS,intron-Distal4.250763.34382K562APOBEC3C
chr129625498196255072+CDS,intron-Proximal3.1294220.58826K562PABPC4
chr129625494496254989+CDS,intron-Proximal4.518286.16046K562LIN28B
chr129625494596254999+CDS,intron-Proximal3.324755.07384K562DROSHA
chr129625580296255871+intron-Distal3.002323.22526HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNRPF is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNRPF is not available on ENCORE database.

  • 117 RBPs can affect the levels of SNRPF.  








The Knockdown/knockout RNA-Seq assay for SNRPF is not available on ENCORE database.





117 RBPs can affect the gene expression of SNRPF :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNRPFENSG00000139343.6728.40310860.14430-0.239801.994401.46230HepG2ACO1
SNRPFENSG00000139343.6439.27990606.23370-0.464702.433001.45280HepG2AKAP8
SNRPFENSG00000139343.6701.80600864.13210-0.300202.623801.87400HepG2AKAP8L
SNRPFENSG00000139343.6670.947901057.80190-0.656806.148705.00010HepG2ASCC1
SNRPFENSG00000139343.6970.990101605.86200-0.7258017.1148015.67290HepG2AUH
SNRPFENSG00000139343.6502.00550896.49260-0.836608.533007.06800HepG2BCLAF1
SNRPFENSG00000139343.6665.272501482.86250-1.1564022.3573020.91440HepG2BOP1
SNRPFENSG00000139343.6661.02300859.89310-0.379504.380803.58090HepG2CKAP4
SNRPFENSG00000139343.6797.066601361.34550-0.772309.724108.51120HepG2CPSF6
SNRPFENSG00000139343.61049.790901458.05150-0.473906.962206.03060HepG2CELF1
SNRPFENSG00000139343.6646.314701224.67690-0.9221011.4079010.21840HepG2DDX3X
SNRPFENSG00000139343.6750.836401014.37210-0.434002.548201.80180HepG2DDX55
SNRPFENSG00000139343.6916.724601545.90890-0.753904.765203.49360HepG2DDX59
SNRPFENSG00000139343.6625.891901051.88020-0.749006.845405.90850HepG2DDX6
SNRPFENSG00000139343.6590.40130770.99660-0.385002.701801.72910HepG2DHX30
SNRPFENSG00000139343.6624.07280799.35460-0.357102.525701.84940HepG2DNAJC21
SNRPFENSG00000139343.6592.71680792.38000-0.418805.034104.19570HepG2DNAJC2
SNRPFENSG00000139343.6511.28940733.00730-0.519703.172401.97910HepG2AGO1
SNRPFENSG00000139343.6752.482201011.33950-0.426502.886502.28110HepG2EIF2S1
SNRPFENSG00000139343.6818.505201088.12420-0.410802.071301.47200HepG2EIF4B
SNRPFENSG00000139343.6990.031001481.63670-0.581604.490603.46860HepG2EIF4G2
SNRPFENSG00000139343.61072.534701843.82070-0.7817019.8144018.45260HepG2ETF1
SNRPFENSG00000139343.6439.93870598.89710-0.445003.446102.12350HepG2FAM120A
SNRPFENSG00000139343.6611.54760822.93860-0.428303.498902.61840HepG2FUBP3
SNRPFENSG00000139343.6589.545001046.05180-0.827308.716207.57030HepG2G3BP1
SNRPFENSG00000139343.6354.86380596.65850-0.749605.973704.65390HepG2GEMIN5
SNRPFENSG00000139343.6598.18920871.21990-0.542403.908302.69450HepG2GNB2L1
SNRPFENSG00000139343.6858.729001543.18300-0.8456010.091608.92290HepG2GPKOW
SNRPFENSG00000139343.6650.35280821.15260-0.336403.247702.19160HepG2HDGF
SNRPFENSG00000139343.6582.36950807.01350-0.470703.710102.97790HepG2HNRNPA1
SNRPFENSG00000139343.61063.729101440.82270-0.437806.389005.07040HepG2HNRNPA2B1
SNRPFENSG00000139343.6866.446701273.14770-0.555204.453603.56830HepG2HNRNPF
SNRPFENSG00000139343.6675.986801472.68870-1.1234018.0948016.69120HepG2HNRNPLL
SNRPFENSG00000139343.6743.197001253.69400-0.754405.666504.66870HepG2IGF2BP1
SNRPFENSG00000139343.6654.052001063.32750-0.701106.843605.82690HepG2IGF2BP2
SNRPFENSG00000139343.6761.12420910.88250-0.259102.033801.39390HepG2ILF2
SNRPFENSG00000139343.6728.102101069.45340-0.554703.548302.39490HepG2KHSRP
SNRPFENSG00000139343.6603.23810786.23980-0.382204.269803.01430HepG2KIF1C
SNRPFENSG00000139343.6842.407501127.91570-0.421102.956802.27950HepG2MAGOH
SNRPFENSG00000139343.6893.484801501.96910-0.749305.822604.38920HepG2MTPAP
SNRPFENSG00000139343.6638.684901161.00780-0.862209.657208.51450HepG2NCBP2
SNRPFENSG00000139343.61038.116101554.59790-0.582609.167207.80730HepG2NOL12
SNRPFENSG00000139343.6535.748001034.07890-0.9487011.439809.99860HepG2PABPC4
SNRPFENSG00000139343.6617.12500893.88220-0.534503.004501.92280HepG2PCBP2
SNRPFENSG00000139343.6584.16860782.56340-0.421802.481001.71430HepG2PRPF8
SNRPFENSG00000139343.6639.795001024.95260-0.6799010.770109.82630HepG2PTBP1
SNRPFENSG00000139343.61049.928101483.99760-0.499202.527201.95430HepG2PUF60
SNRPFENSG00000139343.61388.587301575.32650-0.182001.970101.45240HepG2PUM1
SNRPFENSG00000139343.61145.656101574.17740-0.458405.664504.71770HepG2PUM2
SNRPFENSG00000139343.6512.46060876.10340-0.7737014.3040013.09390HepG2PUS1
SNRPFENSG00000139343.6781.725301109.90980-0.505705.746404.89410HepG2QKI
SNRPFENSG00000139343.6579.29360862.57710-0.574402.626401.93830HepG2RAVER1
SNRPFENSG00000139343.61272.445101541.07700-0.276302.913802.38570HepG2RBM22
SNRPFENSG00000139343.6603.925501007.36700-0.738109.489908.29690HepG2RBM25
SNRPFENSG00000139343.6860.297601140.61950-0.406903.614103.01240HepG2NELFE
SNRPFENSG00000139343.6829.979901062.43050-0.356203.042702.40040HepG2RECQL
SNRPFENSG00000139343.6705.904801371.38790-0.9581015.5498014.18400HepG2RPLP0
SNRPFENSG00000139343.6503.89440847.38660-0.749905.053603.79860HepG2RPS10
SNRPFENSG00000139343.6505.99460652.04700-0.365902.406201.82820HepG2RPS19
SNRPFENSG00000139343.6538.56360774.12280-0.523403.263502.41880HepG2RRP9
SNRPFENSG00000139343.61114.595301457.66610-0.387103.272002.51060HepG2SF3B1
SNRPFENSG00000139343.61126.054601422.91730-0.337604.023503.20110HepG2SLBP
SNRPFENSG00000139343.6602.05700879.71650-0.547103.411602.33540HepG2SMNDC1
SNRPFENSG00000139343.6833.332301621.91090-0.960708.809107.42150HepG2SNRNP70
SNRPFENSG00000139343.61017.132701740.56170-0.7750021.3361020.28600HepG2SRFBP1
SNRPFENSG00000139343.61523.226101113.755200.451607.321806.63800HepG2SRSF1
SNRPFENSG00000139343.61024.096701465.22850-0.516808.885107.84710HepG2SRSF5
SNRPFENSG00000139343.6749.806501250.80150-0.7383014.6750013.29300HepG2SRSF7
SNRPFENSG00000139343.6566.36240906.14030-0.6780011.0372010.06400HepG2SRSF9
SNRPFENSG00000139343.61070.068801511.17050-0.498008.995408.17330HepG2SSB
SNRPFENSG00000139343.6931.17930657.672900.501603.437502.02520HepG2SSRP1
SNRPFENSG00000139343.6558.63040890.27300-0.672403.281602.26330HepG2SUPT6H
SNRPFENSG00000139343.6522.599801009.80840-0.950309.917508.76840HepG2SUPV3L1
SNRPFENSG00000139343.6793.896601001.21920-0.334702.813202.24840HepG2TAF15
SNRPFENSG00000139343.6840.447901435.43740-0.7723010.413809.14270HepG2TARDBP
SNRPFENSG00000139343.6630.46260919.84340-0.545002.910702.05540HepG2TIA1
SNRPFENSG00000139343.61132.070401449.79880-0.356902.388801.58100HepG2TUFM
SNRPFENSG00000139343.6876.874601534.58650-0.807408.695007.17990HepG2UBE2L3
SNRPFENSG00000139343.6727.93660978.60730-0.426905.397604.47320HepG2UPF1
SNRPFENSG00000139343.61261.03920944.811700.416405.542204.74280HepG2UTP3
SNRPFENSG00000139343.6876.508901076.28520-0.296203.491502.89710HepG2ZNF622
SNRPFENSG00000139343.62610.627203625.61190-0.473804.257202.71840K562ABCF1
SNRPFENSG00000139343.63065.200501681.134300.8664032.1318030.28420K562AGGF1
SNRPFENSG00000139343.62324.496901847.303100.331403.018501.97960K562AKAP8
SNRPFENSG00000139343.62519.687901749.294100.526406.801205.74080K562AKAP8L
SNRPFENSG00000139343.62514.810501835.426300.454207.555605.93290K562ATP5C1
SNRPFENSG00000139343.61347.006801887.23890-0.486507.507305.90070K562BCLAF1
SNRPFENSG00000139343.61032.114502476.51370-1.262706.571905.21290K562BOP1
SNRPFENSG00000139343.61437.649502525.23560-0.812703.118001.59240K562BUD13
SNRPFENSG00000139343.62225.465503886.03130-0.804206.169904.52850K562CNOT7
SNRPFENSG00000139343.61329.367302633.45120-0.986204.996403.94830K562CPSF6
SNRPFENSG00000139343.61099.506701431.75240-0.380904.275802.92300K562CSTF2
SNRPFENSG00000139343.61105.029201393.57110-0.334702.494301.50780K562DDX3X
SNRPFENSG00000139343.62489.624103256.12210-0.387207.188906.20690K562DDX47
SNRPFENSG00000139343.62859.803001882.380300.6033013.8765011.58950K562DKC1
SNRPFENSG00000139343.61280.941101530.78530-0.257102.695601.50880K562EIF2S1
SNRPFENSG00000139343.61779.443402309.73770-0.376305.487704.52580K562EIF2S2
SNRPFENSG00000139343.61189.762001455.96310-0.291302.131701.40730K562EIF4A3
SNRPFENSG00000139343.61220.443401582.96870-0.375203.810902.28840K562EXOSC5
SNRPFENSG00000139343.61327.837502679.07420-1.012705.224004.04170K562FMR1
SNRPFENSG00000139343.61176.101602270.58350-0.949104.887803.63680K562FTO
SNRPFENSG00000139343.61889.426701514.144700.319302.278601.72080K562FXR1
SNRPFENSG00000139343.61578.332602127.73070-0.430904.589603.12650K562GLRX3
SNRPFENSG00000139343.61185.464002514.46300-1.084805.760804.61820K562GPKOW
SNRPFENSG00000139343.62537.571503078.13880-0.278602.489501.76990K562GRSF1
SNRPFENSG00000139343.6771.868501658.98180-1.103907.687406.73920K562HNRNPC
SNRPFENSG00000139343.61928.881002351.10920-0.285603.281102.31040K562HNRNPU
SNRPFENSG00000139343.62729.103301856.446400.555806.465705.08170K562KIF1C
SNRPFENSG00000139343.61155.717102146.60470-0.893304.195603.02340K562KRR1
SNRPFENSG00000139343.63046.948702079.687700.550908.676206.87990K562MBNL1
SNRPFENSG00000139343.61299.393402454.32670-0.917504.626903.47290K562METAP2
SNRPFENSG00000139343.61489.936202237.01260-0.5863014.5077012.82960K562MTPAP
SNRPFENSG00000139343.62551.134601457.709800.807303.026602.09640K562NAA15
SNRPFENSG00000139343.61687.314202485.62700-0.5589018.8429017.13470K562NSUN2
SNRPFENSG00000139343.62145.457303733.33820-0.799206.573204.67950K562PABPC1
SNRPFENSG00000139343.61430.160702013.52280-0.493504.408303.35950K562PCBP3
SNRPFENSG00000139343.61969.321801351.306000.543206.045104.93610K562PRPF8
SNRPFENSG00000139343.62796.640801734.836400.688809.436808.48370K562PUS1
SNRPFENSG00000139343.62602.737501690.322900.6226012.9283011.64540K562RBM15
SNRPFENSG00000139343.6997.894401376.55740-0.464103.060002.19990K562RPS19
SNRPFENSG00000139343.6898.079701154.23960-0.362002.374901.45620K562RPS3
SNRPFENSG00000139343.61811.505902452.52320-0.437107.700006.39310K562SF3A3
SNRPFENSG00000139343.62149.819902512.64880-0.225003.044102.06820K562SRPK2
SNRPFENSG00000139343.61338.758501631.10310-0.285003.041601.81080K562SRSF7
SNRPFENSG00000139343.62406.114403127.60400-0.378402.948201.65210K562STAU1
SNRPFENSG00000139343.6760.436701308.53530-0.783108.439606.62590K562SUPV3L1
SNRPFENSG00000139343.62037.038101549.141100.394904.744303.66350K562SYNCRIP
SNRPFENSG00000139343.61395.611101872.72500-0.424203.819802.98240K562TARDBP
SNRPFENSG00000139343.62279.115003049.18950-0.420003.451401.87070K562TRIP6
SNRPFENSG00000139343.6966.923301384.83390-0.518204.643603.28960K562UCHL5
SNRPFENSG00000139343.61538.171702635.55470-0.7769023.1306021.29570K562UPF1
SNRPFENSG00000139343.61501.525802255.17450-0.586809.111807.48350K562WDR3
SNRPFENSG00000139343.63062.914703840.46390-0.326403.471702.01730K562WRN
SNRPFENSG00000139343.62542.214203651.47950-0.522407.179405.67640K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNRPF is not available on ENCORE database.





1 RBPs can affect the splicing of SNRPF :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXESNRPFENSG00000139343.6chr12+96254945962550719625910196259166962527059625285496259782962608310.094000.000320.009451includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNRPF is not avaliable on ENCORE database.