RPRD2

General Information

Gene Name       : RPRD2
Gene ID             : ENSG00000163125.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RPRD2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPRD2ENSG00000163125.1514.3615.6815.02ENCSR000AEF
HepG2RPRD2ENSG00000163125.1510.2213.2411.73ENCSR985KAT
K562RPRD2ENSG00000163125.1513.2314.3313.78ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPRD2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPRD2 RNA is bound by 22 proteins.  







eCLIP assay for RPRD2 is not avaliable on ENCORE database.





22 proteins are bound to RPRD2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1150413478150413531+3'-UTR,CDS,intron-Proximal4.616244.16174HepG2PRPF8
chr1150447481150447522+3'-UTR3.419093.62890K562FAM120A
chr1150413926150413991+3'-UTR,intron-Distal4.046344.31512K562KHSRP
chr1150448874150448903+3'-UTR4.392315.20626K562PUM2
chr1150446153150446221+3'-UTR6.0724212.56794K562FAM120A
chr1150446105150446153+3'-UTR3.516938.32448K562FAM120A
chr1150448873150448932+3'-UTR3.793823.19904K562TIA1
chr1150444500150444545+3'-UTR,CDS4.618885.85529K562RBM15
chr1150446628150446667+3'-UTR4.617054.92659K562FAM120A
chr1150413413150413602+3'-UTR,CDS,intron-Distal,intron-Proximal3.853735.85201K562PRPF8
chr1150448808150448874+3'-UTR6.0055713.73238K562PUM2
chr1150337174150337220+5'-UTR,CDS,intron-Distal4.560115.51215K562RBM15
chr1150443230150443255+CDS3.920633.11168K562ZNF622
chr1150443190150443285+CDS3.877546.36204K562IGF2BP1
chr1150443290150443380+CDS3.962637.46470K562YBX3
chr1150444942150444980+CDS5.099117.58445K562RBM15
chr1150432585150432666+CDS3.824593.66655K562YBX3
chr1150444846150444908+CDS3.653924.51666K562RBM15
chr1150443180150443233+CDS3.284143.04831K562RBM15
chr1150432606150432700+CDS3.344553.95937K562UCHL5
chr1150416663150416781+CDS,intron-Proximal4.171316.92290HepG2AQR
chr1150445221150445259+CDS3.846743.88460HepG2PCBP2
chr1150337363150337399+CDS,intron-Distal,intron-Proximal3.791043.56019HepG2GRWD1
chr1150418762150418855+CDS4.126107.27704K562ZNF622
chr1150443502150443567+CDS3.683365.08507K562ZNF622
chr1150415657150415768+CDS,intron-Proximal4.376004.27476HepG2AQR
chr1150418761150418872+CDS3.030313.47684HepG2GRWD1
chr1150443096150443168+CDS4.049093.06406HepG2IGF2BP1
chr1150444245150444310+CDS,intron-Proximal4.452255.40333K562RBM15
chr1150390091150390193+CDS3.081883.07714K562YBX3
chr1150445011150445113+CDS3.310804.06924K562IGF2BP2
chr1150337300150337362+CDS,intron-Distal4.067343.06595HepG2BCLAF1
chr1150444148150444204+CDS4.428594.70436K562RBM15
chr1150444360150444403+CDS3.544106.74337K562RBM15
chr1150337763150337802+intron-Distal4.1865812.19252HepG2HNRNPM
chr1150390412150390465+intron-Distal4.571949.78100HepG2PTBP1
chr1150337839150337927+intron-Distal5.7156514.26926K562TARDBP
chr1150367850150367908+intron-Distal4.283404.85626K562TARDBP
chr1150354391150354464+intron-Distal5.0298410.34143K562QKI
chr1150337765150337821+intron-Distal3.215015.10669K562HNRNPM
chr1150346993150347057+intron-Distal3.442673.10810K562HNRNPM
chr1150343431150343502+intron-Distal3.021714.72285HepG2HNRNPL
chr1150347112150347160+intron-Distal4.6021415.52664HepG2HNRNPM
chr1150422438150422484+intron-Distal5.054056.90462K562PTBP1
chr1150336639150336755+intron-Distal4.695464.87288HepG2NCBP2
chr1150432855150432931+intron-Distal,intron-Proximal3.577425.56048K562KHSRP
chr1150342269150342324+intron-Distal3.466145.00867HepG2HNRNPC
chr1150347112150347169+intron-Distal4.9635411.10902K562HNRNPM
chr1150353141150353196+intron-Distal4.123084.51536HepG2HNRNPC
chr1150390230150390336+intron-Distal,intron-Proximal4.416056.13339K562KHSRP
chr1150415769150415909+intron-Distal,intron-Proximal4.308433.85435K562PRPF8
chr1150390410150390471+intron-Distal5.213094.90095K562PTBP1
chr1150347070150347112+intron-Distal3.265933.63437HepG2HNRNPM
chr1150415568150415705+intron-Distal,intron-Proximal3.778043.45805K562KHSRP
chr1150422013150422094+intron-Distal4.460477.08067K562PTBP1
chr1150337607150337649+intron-Distal5.7970911.13888HepG2HNRNPM
chr1150339523150339584+intron-Distal3.795745.37814HepG2HNRNPM
chr1150337685150337810+intron-Distal3.086203.48890K562KHSRP
chr1150346929150346993+intron-Distal4.196843.29197K562HNRNPM
chr1150337610150337665+intron-Distal4.9194214.98393K562HNRNPM
chr1150347074150347109+intron-Distal3.745784.08493K562HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPRD2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPRD2 is not available on ENCORE database.

  • 70 RBPs can affect the levels of RPRD2.  








The Knockdown/knockout RNA-Seq assay for RPRD2 is not available on ENCORE database.





70 RBPs can affect the gene expression of RPRD2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPRD2ENSG00000163125.11806.137001010.99220-0.326703.596902.92000HepG2ACO1
RPRD2ENSG00000163125.111297.877001006.121100.367202.733801.74140HepG2ADAR
RPRD2ENSG00000163125.111308.142401009.566900.373702.597701.83590HepG2ASCC1
RPRD2ENSG00000163125.111218.031101547.16860-0.345104.571503.72710HepG2AUH
RPRD2ENSG00000163125.11690.95310944.72110-0.451302.617301.70790HepG2BCCIP
RPRD2ENSG00000163125.111297.281101587.13140-0.290902.112401.58430HepG2BOP1
RPRD2ENSG00000163125.111001.358601420.89080-0.504806.234505.13770HepG2CALR
RPRD2ENSG00000163125.111211.83080959.157000.337202.178701.48770HepG2CIRBP
RPRD2ENSG00000163125.11757.943301010.64030-0.415105.682404.79140HepG2CKAP4
RPRD2ENSG00000163125.11931.018201108.18690-0.251301.853601.30750HepG2CELF1
RPRD2ENSG00000163125.111114.33800934.962200.253102.700701.87660HepG2DDX19B
RPRD2ENSG00000163125.111195.21700932.179100.358503.109702.13990HepG2DDX24
RPRD2ENSG00000163125.11665.23460928.84810-0.481602.937502.14410HepG2DDX55
RPRD2ENSG00000163125.11610.802201004.01410-0.717006.202805.30740HepG2DDX6
RPRD2ENSG00000163125.111206.86770967.211400.319303.420502.67800HepG2DKC1
RPRD2ENSG00000163125.11815.123501004.20000-0.301003.139102.45170HepG2DNAJC2
RPRD2ENSG00000163125.111415.35220985.809600.521704.695303.52170HepG2EEF2
RPRD2ENSG00000163125.111342.936101066.668000.332201.928501.39060HepG2EIF4A3
RPRD2ENSG00000163125.111373.447901059.853800.373802.701601.82310HepG2G3BP2
RPRD2ENSG00000163125.112137.464501651.729600.371802.665102.03490HepG2GPKOW
RPRD2ENSG00000163125.11695.863101010.88380-0.538704.728403.83710HepG2HNRNPK
RPRD2ENSG00000163125.11798.615601085.18290-0.442406.192905.22060HepG2HNRNPL
RPRD2ENSG00000163125.11975.508701130.16840-0.212301.874101.36580HepG2HNRNPU
RPRD2ENSG00000163125.11918.436701154.42650-0.329904.516403.59850HepG2ILF2
RPRD2ENSG00000163125.111335.919601076.573900.311301.884301.33820HepG2MAGOH
RPRD2ENSG00000163125.11831.68920661.766400.329602.519301.35080HepG2PKM
RPRD2ENSG00000163125.111258.498601501.36010-0.254602.706401.93980HepG2PRPF4
RPRD2ENSG00000163125.111476.187401197.251500.302004.847804.10760HepG2PUM1
RPRD2ENSG00000163125.11984.132901484.74640-0.593309.770708.93240HepG2RBM22
RPRD2ENSG00000163125.11813.451101006.45420-0.307203.232302.54660HepG2SAFB2
RPRD2ENSG00000163125.111098.449201560.21010-0.506305.097604.16200HepG2SF3B1
RPRD2ENSG00000163125.11952.879401173.67770-0.300703.792403.05940HepG2SMN1
RPRD2ENSG00000163125.111484.522601676.94230-0.175801.822901.39050HepG2SRFBP1
RPRD2ENSG00000163125.111742.610801131.331400.6231013.0798012.21620HepG2SRSF1
RPRD2ENSG00000163125.11679.80100924.66850-0.443802.569801.91520HepG2SUPV3L1
RPRD2ENSG00000163125.111217.425501016.765500.259702.027801.53480HepG2TAF15
RPRD2ENSG00000163125.11891.816201107.99100-0.313103.414602.80270HepG2TRIM56
RPRD2ENSG00000163125.112477.481201551.963300.674709.505308.32650HepG2U2AF1
RPRD2ENSG00000163125.11778.089801166.41410-0.584104.401903.32900HepG2UBE2L3
RPRD2ENSG00000163125.11390.92150546.24010-0.482702.934302.15530HepG2UCHL5
RPRD2ENSG00000163125.111261.261701678.61120-0.412406.860605.84170HepG2UPF1
RPRD2ENSG00000163125.111270.642001846.15080-0.5390013.7198012.73430HepG2ZNF622
RPRD2ENSG00000163125.111063.283702000.11700-0.9116028.2375026.51880K562AGGF1
RPRD2ENSG00000163125.111685.566102197.68970-0.382803.910202.69790K562AKAP8
RPRD2ENSG00000163125.111047.625702081.17880-0.9903020.0659017.98170K562AKAP8L
RPRD2ENSG00000163125.112335.297801367.533800.7719011.7751010.68790K562AQR
RPRD2ENSG00000163125.111730.021702183.59410-0.335904.337003.16530K562ATP5C1
RPRD2ENSG00000163125.111115.96890879.445900.343502.446401.46520K562CCAR1
RPRD2ENSG00000163125.111989.114502390.35880-0.265102.720201.55740K562CCDC124
RPRD2ENSG00000163125.111814.737102239.70830-0.303602.888501.99220K562DKC1
RPRD2ENSG00000163125.111275.30340894.530100.511502.615801.64060K562EIF3A
RPRD2ENSG00000163125.111338.38100786.704100.7665010.757209.11810K562EIF4A3
RPRD2ENSG00000163125.112440.758902099.211200.217402.517901.61820K562EIF4G2
RPRD2ENSG00000163125.111334.317302050.07970-0.619603.707302.71550K562FIP1L1
RPRD2ENSG00000163125.111072.57520818.132900.390604.090603.37620K562FXR1
RPRD2ENSG00000163125.111023.86160738.087600.472102.863402.14160K562G3BP2
RPRD2ENSG00000163125.111185.888401829.00670-0.625108.989407.60480K562GRSF1
RPRD2ENSG00000163125.11712.874301056.64220-0.567804.951303.24620K562HNRNPK
RPRD2ENSG00000163125.111091.705001686.05830-0.627103.661102.57660K562HNRNPM
RPRD2ENSG00000163125.111870.044002779.69920-0.571903.204102.35160K562HSPD1
RPRD2ENSG00000163125.11803.149701057.75320-0.397302.328701.41010K562IGF2BP2
RPRD2ENSG00000163125.111461.427602208.76870-0.595904.509503.41680K562KIF1C
RPRD2ENSG00000163125.111491.783702114.23960-0.503103.560202.29220K562MAK16
RPRD2ENSG00000163125.111123.400401734.33850-0.626505.209903.86640K562NAA15
RPRD2ENSG00000163125.111045.82220785.620400.412603.824902.36010K562NCBP2
RPRD2ENSG00000163125.11755.49430989.27680-0.389002.976501.96290K562PCBP2
RPRD2ENSG00000163125.111350.582302327.01310-0.784905.063503.89840K562PPIG
RPRD2ENSG00000163125.11778.407802064.19890-1.4070033.8371031.90350K562PUS1
RPRD2ENSG00000163125.111154.680802011.05150-0.8005018.4088016.84450K562RBM15
RPRD2ENSG00000163125.111538.148201222.586300.331202.815401.72330K562SAFB
RPRD2ENSG00000163125.112128.042701358.703800.647202.580801.34110K562SFPQ
RPRD2ENSG00000163125.111645.497901950.60080-0.245403.005202.03620K562SRPK2
RPRD2ENSG00000163125.111347.351201058.930500.347403.087202.34380K562SRSF1
RPRD2ENSG00000163125.111156.98320942.570500.295602.680501.42770K562SSB
RPRD2ENSG00000163125.111715.780201376.206400.318102.000901.30310K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPRD2 is not available on ENCORE database.





21 RBPs can affect the splicing of RPRD2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.494000.000180.02237includedHepG2G3BP1
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.658000.000000.00000includedK562SRSF1
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.295000.000500.03561includedHepG2RBM22
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.350000.000010.01141includedK562TIA1
SERPRD2ENSG00000163125.11chr1+150414356150414434150413398150413499150415706150415759-0.420000.000070.00393excludedK562AKAP8L
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.283000.000000.00166includedK562PUM1
SERPRD2ENSG00000163125.11chr1+150437002150437203150432535150432793150443036150444218-0.101000.000030.01782excludedK562PUM1
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.347000.000030.00246includedK562FXR1
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.436000.000000.00079includedHepG2SFPQ
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.364000.000000.00063includedK562APOBEC3C
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.348000.000130.02137includedHepG2LARP4
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.491000.000000.00000includedHepG2SRSF1
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.230000.000080.05328includedK562PUM2
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.219000.000400.06405includedK562EIF4G2
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.302000.000290.01416includedK562TARDBP
SERPRD2ENSG00000163125.11chr1+150414356150414434150413398150413499150415706150415759-0.390000.000020.00125excludedK562RBM15
SERPRD2ENSG00000163125.11chr1+150414356150414434150413398150413499150415706150415759-0.483000.000000.00000excludedK562AGGF1
SERPRD2ENSG00000163125.11chr1+150437002150437203150432535150432793150443036150446032-0.173000.003070.09893excludedHepG2HNRNPU
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.460000.000150.00842includedHepG2HNRNPC
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.539000.000000.00032includedK562SAFB
SERPRD2ENSG00000163125.11chr1+150414356150414434150413398150413499150415706150415759-0.458000.000020.00946excludedHepG2PRPF4
SERPRD2ENSG00000163125.11chr1+1504143561504144341504133981504134991504157061504157590.357000.000000.00009includedK562PTBP1
MXERPRD2ENSG00000163125.11chr1+150432535150432793150437002150437203150429763150430046150443036150446032-0.197000.004510.028052includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPRD2 is not avaliable on ENCORE database.