LIN9

General Information

Gene Name : LIN9
Gene ID : ENSG00000183814.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LIN9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LIN9	ENSG00000183814.15	8.82	6.35	7.58	ENCSR000AEF
HepG2	LIN9	ENSG00000183814.15	2.91	7.13	5.02	ENCSR985KAT
K562	LIN9	ENSG00000183814.15	15.58	16.99	16.29	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LIN9 is not avaliable on ENCORE database.

Proteins bound to RNA

LIN9 RNA is bound by 9 proteins.

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eCLIP assay for LIN9 is not avaliable on ENCORE database.

9 proteins are bound to LIN9 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	226496729	226496810	-	5'-UTR,intron-Distal,intron-Proximal	5.98815	25.05606	K562	AQR
chr1	226496737	226496784	-	5'-UTR,intron-Distal,intron-Proximal	4.68346	10.15996	HepG2	RBM22
chr1	226496718	226496785	-	5'-UTR,intron-Distal,intron-Proximal	3.67888	8.23659	K562	EFTUD2
chr1	226496307	226496397	-	intron-Distal	4.71210	6.08021	K562	PRPF8
chr1	226418957	226419051	-	3'-UTR,intron-Distal	4.70378	5.84664	K562	PUM2
chr1	226496728	226496785	-	5'-UTR,intron-Distal,intron-Proximal	3.25603	4.93246	K562	RBM22
chr1	226496544	226496654	-	5'-UTR,intron-Distal	3.05114	4.72953	K562	PRPF8
chr1	226475376	226475476	-	CDS,intron-Distal,intron-Proximal	3.02240	4.03389	K562	ZNF622
chr1	226452947	226453052	-	intron-Distal	4.00429	3.96304	K562	CSTF2T
chr1	226418940	226418996	-	3'-UTR,intron-Distal	3.02228	3.51794	K562	ZC3H11A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 13 entries

eCLIP assay for LIN9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LIN9 is not available on ENCORE database.
88 RBPs can affect the levels of LIN9.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LIN9 is not available on ENCORE database.

88 RBPs can affect the gene expression of LIN9 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LIN9	ENSG00000183814.11	51.39570	192.93660	-1.90840	17.43280	16.35460	HepG2	ZNF622
LIN9	ENSG00000183814.11	79.52550	253.96520	-1.67510	14.01230	12.81290	HepG2	BOP1
LIN9	ENSG00000183814.11	76.85850	252.20580	-1.71430	13.21730	11.97900	HepG2	HNRNPLL
LIN9	ENSG00000183814.11	115.20490	271.97430	-1.23930	12.30500	10.92040	HepG2	DAZAP1
LIN9	ENSG00000183814.11	64.19580	187.55490	-1.54680	11.00110	10.11860	HepG2	TIAL1
LIN9	ENSG00000183814.11	52.96780	193.81710	-1.87150	11.29040	10.07820	HepG2	SUPV3L1
LIN9	ENSG00000183814.11	120.94700	280.06760	-1.21140	10.29830	9.49800	HepG2	SRFBP1
LIN9	ENSG00000183814.11	83.06210	212.44160	-1.35480	8.89140	7.77410	HepG2	RPLP0
LIN9	ENSG00000183814.11	102.70000	245.86200	-1.25940	8.66940	7.48590	HepG2	TARDBP
LIN9	ENSG00000183814.11	72.32980	171.44380	-1.24510	8.54950	7.47920	HepG2	DNAJC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LIN9 is not available on ENCORE database.

15 RBPs can affect the splicing of LIN9 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LIN9	ENSG00000183814.11	chr1	-	226483542	226483647			226475400	226475498	226485419	226485514	-0.24900	0.00000	0.00001	excluded	K562	AQR
A3SS	LIN9	ENSG00000183814.11	chr1	-	226453913	226454086			226453913	226454033	226455657	226455791	0.09900	0.00000	0.00000	longer	K562	AQR
A3SS	LIN9	ENSG00000183814.11	chr1	-	226485419	226485604			226485419	226485514	226488873	226488966	0.07200	0.00000	0.00000	longer	K562	AQR
A3SS	LIN9	ENSG00000183814.11	chr1	-	226465475	226465668			226465475	226465633	226474033	226474248	0.06500	0.00000	0.00001	longer	K562	AQR
MXE	LIN9	ENSG00000183814.11	chr1	-	226483542	226483647	226485419	226485533	226475400	226475498	226488873	226488906	0.27700	0.00000	0.00003	1included	K562	AQR
MXE	LIN9	ENSG00000183814.11	chr1	-	226475400	226475498	226483542	226483647	226474033	226474159	226485419	226485514	-0.27300	0.00000	0.00003	2included	K562	AQR
MXE	LIN9	ENSG00000183814.11	chr1	-	226483542	226483647	226485419	226485514	226475364	226475498	226488873	226488906	0.19900	0.00000	0.00004	1included	K562	U2AF2
MXE	LIN9	ENSG00000183814.11	chr1	-	226483542	226483647	226485419	226485604	226475400	226475498	226488873	226488906	0.25200	0.00001	0.00013	1included	K562	AQR
MXE	LIN9	ENSG00000183814.11	chr1	-	226483542	226483647	226485412	226485514	226475393	226475498	226488873	226488906	0.24300	0.00001	0.00026	1included	K562	U2AF2
MXE	LIN9	ENSG00000183814.11	chr1	-	226483542	226483647	226485419	226485514	226475364	226475498	226488873	226488906	0.20500	0.00001	0.00129	1included	K562	AKAP8L

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LIN9

General Information

Functions

Localization

Domains (AlphaFold: LIN9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LIN9 is not avaliable on ENCORE database.

9 proteins are bound to LIN9 RNA:

eCLIP assay for LIN9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LIN9 is not available on ENCORE database.

88 RBPs can affect the gene expression of LIN9 :

The Knockdown/knockout RNA-Seq assay for LIN9 is not available on ENCORE database.

15 RBPs can affect the splicing of LIN9 :

The Knockdown/knockout RNA-Seq assay for LIN9 is not avaliable on ENCORE database.