LIN9

General Information

Gene Name       : LIN9
Gene ID             : ENSG00000183814.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: LIN9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LIN9ENSG00000183814.158.826.357.58ENCSR000AEF
HepG2LIN9ENSG00000183814.152.917.135.02ENCSR985KAT
K562LIN9ENSG00000183814.1515.5816.9916.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LIN9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LIN9 RNA is bound by 9 proteins.  







eCLIP assay for LIN9 is not avaliable on ENCORE database.





9 proteins are bound to LIN9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1226418940226418996-3'-UTR,intron-Distal3.022283.51794K562ZC3H11A
chr1226418957226419051-3'-UTR,intron-Distal4.703785.84664K562PUM2
chr1226496728226496785-5'-UTR,intron-Distal,intron-Proximal3.256034.93246K562RBM22
chr1226496737226496784-5'-UTR,intron-Distal,intron-Proximal4.6834610.15996HepG2RBM22
chr1226496544226496654-5'-UTR,intron-Distal3.051144.72953K562PRPF8
chr1226496729226496810-5'-UTR,intron-Distal,intron-Proximal5.9881525.05606K562AQR
chr1226496718226496785-5'-UTR,intron-Distal,intron-Proximal3.678888.23659K562EFTUD2
chr1226496705226496810-5'-UTR,intron-Distal,intron-Proximal3.091953.44473K562PRPF8
chr1226475376226475476-CDS,intron-Distal,intron-Proximal3.022404.03389K562ZNF622
chr1226489120226489260-intron-Distal3.960803.47525K562MATR3
chr1226485289226485395-intron-Distal,intron-Proximal3.334663.18246K562PRPF8
chr1226496307226496397-intron-Distal4.712106.08021K562PRPF8
chr1226452947226453052-intron-Distal4.004293.96304K562CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LIN9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LIN9 is not available on ENCORE database.

  • 88 RBPs can affect the levels of LIN9.  








The Knockdown/knockout RNA-Seq assay for LIN9 is not available on ENCORE database.





88 RBPs can affect the gene expression of LIN9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LIN9ENSG00000183814.11104.31630161.33720-0.629102.123201.43890HepG2AKAP8L
LIN9ENSG00000183814.11131.52610258.40700-0.974307.274206.24770HepG2AUH
LIN9ENSG00000183814.11119.58570198.01940-0.727602.584401.68100HepG2BCCIP
LIN9ENSG00000183814.1183.40670172.06970-1.044804.351503.24720HepG2BCLAF1
LIN9ENSG00000183814.1179.52550253.96520-1.6751014.0123012.81290HepG2BOP1
LIN9ENSG00000183814.11121.57500243.09330-0.999706.443305.32900HepG2CALR
LIN9ENSG00000183814.1182.72820160.55660-0.956604.767503.93950HepG2CKAP4
LIN9ENSG00000183814.11108.78420233.14840-1.099806.452105.43600HepG2CPSF6
LIN9ENSG00000183814.11116.84800192.20940-0.718003.057301.89790HepG2CPSF7
LIN9ENSG00000183814.11128.21520252.91740-0.980107.307606.35680HepG2CELF1
LIN9ENSG00000183814.11115.20490271.97430-1.2393012.3050010.92040HepG2DAZAP1
LIN9ENSG00000183814.1184.02530155.73500-0.890203.776502.99630HepG2DDX21
LIN9ENSG00000183814.1168.69310176.91270-1.364803.236902.56700HepG2DDX3X
LIN9ENSG00000183814.1194.49520194.69090-1.042904.501303.54030HepG2DDX55
LIN9ENSG00000183814.11155.60730264.75890-0.766803.062202.03530HepG2DDX59
LIN9ENSG00000183814.11123.89780215.77060-0.800302.622801.63490HepG2DDX5
LIN9ENSG00000183814.1176.06580151.88380-0.997602.278801.71280HepG2DDX6
LIN9ENSG00000183814.1186.88110173.00130-0.993705.476704.51790HepG2DNAJC21
LIN9ENSG00000183814.1172.32980171.44380-1.245108.549507.47920HepG2DNAJC2
LIN9ENSG00000183814.1122.33570146.09680-2.709507.098806.18100HepG2EIF2S1
LIN9ENSG00000183814.1171.23960147.61900-1.051103.814502.76310HepG2EIF3D
LIN9ENSG00000183814.1165.29010161.49630-1.306602.906102.25120HepG2EIF4A3
LIN9ENSG00000183814.11132.45630257.01530-0.956306.063304.87820HepG2EIF4G2
LIN9ENSG00000183814.11159.55150296.65540-0.894805.978005.15100HepG2ETF1
LIN9ENSG00000183814.1187.10090156.92200-0.849303.449802.51450HepG2EWSR1
LIN9ENSG00000183814.1188.81090148.32390-0.739902.926101.75390HepG2FASTKD2
LIN9ENSG00000183814.1181.79860151.10230-0.885401.908701.35150HepG2G3BP1
LIN9ENSG00000183814.11130.21730264.27700-1.021105.946705.03300HepG2GPKOW
LIN9ENSG00000183814.1193.45030174.65840-0.902303.892503.14560HepG2HNRNPA1
LIN9ENSG00000183814.11162.73940249.93960-0.619003.535702.49770HepG2HNRNPA2B1
LIN9ENSG00000183814.1188.24490194.26530-1.138405.961104.97040HepG2HNRNPC
LIN9ENSG00000183814.11108.79770197.22670-0.858204.897403.97720HepG2HNRNPF
LIN9ENSG00000183814.11160.62050247.75560-0.625303.787103.00580HepG2HNRNPL
LIN9ENSG00000183814.1176.85850252.20580-1.7143013.2173011.97900HepG2HNRNPLL
LIN9ENSG00000183814.11128.38910192.98160-0.587902.775402.16660HepG2HNRNPU
LIN9ENSG00000183814.11120.98110194.21330-0.682903.124502.35900HepG2IGF2BP1
LIN9ENSG00000183814.1139.91030153.61610-1.944504.788403.92180HepG2IGF2BP2
LIN9ENSG00000183814.11104.16080197.12600-0.920306.150705.09940HepG2ILF2
LIN9ENSG00000183814.11175.21850310.60740-0.825902.947702.08980HepG2LARP4
LIN9ENSG00000183814.11132.59200257.24960-0.956204.416703.17300HepG2MTPAP
LIN9ENSG00000183814.11185.90510269.68780-0.536702.977502.18640HepG2NOL12
LIN9ENSG00000183814.1169.37200149.40700-1.106802.013601.38930HepG2PABPC4
LIN9ENSG00000183814.11113.27430197.40500-0.801303.357302.21630HepG2PCBP2
LIN9ENSG00000183814.1199.70400172.12590-0.787703.953603.08890HepG2PPIL4
LIN9ENSG00000183814.1176.06310150.20640-0.981703.671802.75700HepG2PRPF8
LIN9ENSG00000183814.11150.13510257.43330-0.777904.596003.85040HepG2PUF60
LIN9ENSG00000183814.11189.38780273.26840-0.529003.346902.70790HepG2PUM1
LIN9ENSG00000183814.11164.33370273.07410-0.732704.529403.68210HepG2PUM2
LIN9ENSG00000183814.1199.68670163.52890-0.714103.232402.57890HepG2PUS1
LIN9ENSG00000183814.11102.18270154.74040-0.598702.104401.54800HepG2QKI
LIN9ENSG00000183814.11164.44950247.95530-0.592402.788802.26910HepG2RBM22
LIN9ENSG00000183814.1183.06210212.44160-1.354808.891407.77410HepG2RPLP0
LIN9ENSG00000183814.1190.41090187.10310-1.049304.734603.51080HepG2RPS10
LIN9ENSG00000183814.1176.56910143.61840-0.907403.527002.84120HepG2RPS19
LIN9ENSG00000183814.1152.9717093.44070-0.818802.148201.44310HepG2RPS3A
LIN9ENSG00000183814.1183.29270148.58700-0.835002.740001.95670HepG2RRP9
LIN9ENSG00000183814.11282.48170197.810200.513901.954101.38500HepG2SF3A3
LIN9ENSG00000183814.11141.42890249.62530-0.819704.522903.63780HepG2SF3B1
LIN9ENSG00000183814.11157.60020246.82110-0.647203.942303.12780HepG2SLBP
LIN9ENSG00000183814.11146.71510200.43290-0.450101.940701.38660HepG2SMN1
LIN9ENSG00000183814.1193.02310194.10230-1.061205.493704.11270HepG2SMNDC1
LIN9ENSG00000183814.11134.50880277.75500-1.046105.200904.11890HepG2SNRNP70
LIN9ENSG00000183814.11120.94700280.06760-1.2114010.298309.49800HepG2SRFBP1
LIN9ENSG00000183814.11284.98290155.267800.876006.106405.47120HepG2SRSF1
LIN9ENSG00000183814.11180.63440254.16780-0.492702.570001.96220HepG2SRSF5
LIN9ENSG00000183814.1194.18540193.76410-1.040706.510905.51570HepG2SRSF7
LIN9ENSG00000183814.11205.94040289.06750-0.489202.911902.27770HepG2SUCLG1
LIN9ENSG00000183814.1192.49010159.14140-0.782903.347702.32010HepG2SUPT6H
LIN9ENSG00000183814.1152.96780193.81710-1.8715011.2904010.07820HepG2SUPV3L1
LIN9ENSG00000183814.11102.70000245.86200-1.259408.669407.48590HepG2TARDBP
LIN9ENSG00000183814.1147.89980129.91200-1.439405.952704.57810HepG2TFIP11
LIN9ENSG00000183814.1164.19580187.55490-1.5468011.0011010.11860HepG2TIAL1
LIN9ENSG00000183814.1186.13330189.19160-1.135208.042507.15970HepG2TRIM56
LIN9ENSG00000183814.11122.74360259.74650-1.081502.593901.63990HepG2U2AF2
LIN9ENSG00000183814.1148.59200114.49730-1.236504.900503.88360HepG2UCHL5
LIN9ENSG00000183814.1187.91610175.42730-0.996705.701904.75650HepG2UPF1
LIN9ENSG00000183814.11104.17770177.49090-0.768702.370501.44690HepG2UPF2
LIN9ENSG00000183814.1195.20820190.79150-1.002804.387203.47990HepG2XRN2
LIN9ENSG00000183814.1151.39570192.93660-1.9084017.4328016.35460HepG2ZNF622
LIN9ENSG00000183814.111492.613001111.892700.424703.522902.87660K562AQR
LIN9ENSG00000183814.112254.453801851.338000.284103.180502.13710K562CELF1
LIN9ENSG00000183814.11384.49250557.75120-0.536704.419903.05810K562DDX3X
LIN9ENSG00000183814.111500.958201274.702700.235602.406901.79330K562DDX47
LIN9ENSG00000183814.11415.88910586.45410-0.495802.609001.60750K562EIF3D
LIN9ENSG00000183814.111040.06860708.192700.554403.733502.88500K562G3BP2
LIN9ENSG00000183814.11669.37270924.29520-0.465502.831902.02800K562GPKOW
LIN9ENSG00000183814.11865.159201225.22570-0.502002.096801.43270K562GRSF1
LIN9ENSG00000183814.11392.32260666.38570-0.764304.559003.81100K562HNRNPC
LIN9ENSG00000183814.11910.716001151.96070-0.339002.755001.70370K562HNRNPL
LIN9ENSG00000183814.11566.30340789.13330-0.478702.641601.73160K562KRR1
LIN9ENSG00000183814.11637.98890902.19930-0.499903.499902.50960K562METAP2
LIN9ENSG00000183814.11551.57300813.20760-0.560107.364606.10020K562MTPAP
LIN9ENSG00000183814.11791.38960532.918200.570404.756903.77670K562PRPF8
LIN9ENSG00000183814.11427.69330597.44560-0.482202.271701.46010K562PSIP1
LIN9ENSG00000183814.11617.18770801.91910-0.377703.036002.34390K562PTBP1
LIN9ENSG00000183814.11749.30710542.904900.464802.063501.36300K562RPS19
LIN9ENSG00000183814.11377.32760516.57400-0.453202.676601.67410K562SRFBP1
LIN9ENSG00000183814.111004.57520786.108800.353702.896902.17650K562SRSF1
LIN9ENSG00000183814.11503.72620795.67810-0.659504.603803.68510K562TARDBP
LIN9ENSG00000183814.11939.13920686.434300.452102.999101.85230K562U2AF1
LIN9ENSG00000183814.111043.05360708.948600.557006.739905.49390K562U2AF2
LIN9ENSG00000183814.11806.78780958.07350-0.247902.225601.57690K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LIN9 is not available on ENCORE database.





15 RBPs can affect the splicing of LIN9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELIN9ENSG00000183814.11chr1-226485419226485514226475364226475498226488873226488906-0.194000.000080.00252excludedK562SRSF1
SELIN9ENSG00000183814.11chr1-226483542226483647226475393226475498226485419226485514-0.236000.002110.05558excludedK562AKAP8L
SELIN9ENSG00000183814.11chr1-2264854122264855332264835422264836472264888732264889060.413000.001400.01618includedK562AQR
SELIN9ENSG00000183814.11chr1-226453233226453335226438539226438620226453913226454059-0.096000.002770.02872excludedK562AQR
SELIN9ENSG00000183814.11chr1-226455657226455791226453913226454033226465475226465633-0.070000.001320.01543excludedK562AQR
SELIN9ENSG00000183814.11chr1-226483542226483647226475400226475498226485419226485514-0.249000.000000.00001excludedK562AQR
SELIN9ENSG00000183814.11chr1-2264835422264836472264753932264754982264854192264855140.217000.000440.02064includedK562FXR1
SELIN9ENSG00000183814.11chr1-226455657226455791226453913226454033226465475226465633-0.071000.000580.01095excludedK562PUS1
SELIN9ENSG00000183814.11chr1-226483542226483647226475393226475498226485419226485514-0.248000.002550.03659excludedK562PUS1
SELIN9ENSG00000183814.11chr1-2264835422264836472264753932264754982264854192264855140.157000.000150.03692includedK562APOBEC3C
SELIN9ENSG00000183814.11chr1-226483542226483647226475393226475498226485419226485514-0.259000.000060.00228excludedK562U2AF1
SELIN9ENSG00000183814.11chr1-2264854192264855142264835422264836472264888732264889060.125000.000440.03699includedK562HNRNPUL1
SELIN9ENSG00000183814.11chr1-226453233226453335226438539226438620226453913226454033-0.085000.000210.04111excludedK562EIF4G2
SELIN9ENSG00000183814.11chr1-226485419226485514226483542226483647226488873226488906-0.123000.000080.02225excludedK562EIF4G2
SELIN9ENSG00000183814.11chr1-2264854192264855142264753642264754982264888732264889060.132000.000800.01656includedK562U2AF2
SELIN9ENSG00000183814.11chr1-226483542226483647226475393226475498226485419226485514-0.286000.000030.00108excludedK562U2AF2
SELIN9ENSG00000183814.11chr1-226483542226483647226475393226475498226485419226485514-0.224000.003540.07040excludedK562RBM15
SELIN9ENSG00000183814.11chr1-226483542226483647226475393226475498226485419226485514-0.317000.000030.00177excludedK562AGGF1
A3SSLIN9ENSG00000183814.11chr1-2264539132264540862264539132264540332264556572264557910.099000.000000.00000longerK562AQR
A3SSLIN9ENSG00000183814.11chr1-2264854192264856042264854192264855142264888732264889660.072000.000000.00000longerK562AQR
A3SSLIN9ENSG00000183814.11chr1-2264654752264656682264654752264656332264740332264742480.065000.000000.00001longerK562AQR
MXELIN9ENSG00000183814.11chr1-226483542226483647226485412226485514226475393226475498226488873226488906-0.196000.000100.005652includedK562PTBP1
MXELIN9ENSG00000183814.11chr1-226483542226483647226485419226485514226475364226475498226488873226488906-0.184000.000040.002612includedK562PTBP1
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854122264855332264753932264754982264888732264889060.238000.000030.002411includedK562RBM15
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855332264753642264754982264888732264889060.308000.000420.017241includedK562RBM15
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855142264753642264754982264888732264889060.170000.001940.051991includedK562RBM15
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854122264855142264753932264754982264888732264889060.209000.000080.002761includedK562U2AF1
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855142264753642264754982264888732264889060.179000.000020.000871includedK562U2AF1
MXELIN9ENSG00000183814.11chr1-2264740332264741592264753642264754982264654752264656332264854192264855140.104000.002830.045111includedK562PUS1
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854122264855142264753932264754982264888732264889060.197000.000690.015191includedK562PUS1
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855332264753642264754982264888732264889060.338000.000320.008191includedK562PUS1
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855142264753642264754982264888732264889060.196000.000060.001961includedK562PUS1
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855332264753642264754982264888732264889060.328000.000020.001681includedK562AGGF1
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855142264753642264754982264888732264889060.174000.000460.021151includedK562AGGF1
MXELIN9ENSG00000183814.11chr1-226483542226483647226485412226485514226475393226475498226488873226488906-0.170000.000430.010002includedK562SRSF1
MXELIN9ENSG00000183814.11chr1-226483542226483647226485419226485514226475364226475498226488873226488906-0.138000.001030.019642includedK562SRSF1
MXELIN9ENSG00000183814.11chr1-2264854192264855142264888732264889662264835422264836472264968092264971980.151000.016390.093951includedK562AQR
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855332264754002264754982264888732264889060.277000.000000.000031includedK562AQR
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264856042264754002264754982264888732264889060.252000.000010.000131includedK562AQR
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855142264753642264754982264888732264889060.109000.003270.025181includedK562AQR
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854122264855332264753642264754982264888732264889060.147000.002670.021191includedK562AQR
MXELIN9ENSG00000183814.11chr1-226475364226475498226483542226483647226474033226474159226485419226485514-0.160000.000030.000382includedK562AQR
MXELIN9ENSG00000183814.11chr1-226475400226475498226483542226483647226474033226474159226485419226485514-0.273000.000000.000032includedK562AQR
MXELIN9ENSG00000183814.11chr1-226453913226454033226455657226455791226426671226426797226465475226465633-0.069000.001040.009422includedK562AQR
MXELIN9ENSG00000183814.11chr1-226475364226475530226483542226483647226474033226474159226485419226485514-0.168000.001420.012342includedK562AQR
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854122264855142264753932264754982264888732264889060.243000.000010.000261includedK562U2AF2
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855142264753642264754982264888732264889060.199000.000000.000041includedK562U2AF2
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855142264753642264754982264888732264889060.171000.001770.079261includedK562LARP7
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854122264855142264753932264754982264888732264889060.252000.000810.027511includedK562PPIL4
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855142264753642264754982264888732264889060.249000.003010.061991includedK562PPIL4
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854122264855142264753932264754982264888732264889060.217000.000040.003711includedK562AKAP8L
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855332264753642264754982264888732264889060.335000.000020.001671includedK562AKAP8L
MXELIN9ENSG00000183814.11chr1-2264835422264836472264854192264855142264753642264754982264888732264889060.205000.000010.001291includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LIN9 is not avaliable on ENCORE database.