TP73-AS1

General Information

Gene Name : TP73-AS1
Gene ID : ENSG00000227372.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TP73-AS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TP73-AS1	ENSG00000227372.12	2.97	4.55	3.76	ENCSR000AEF
HepG2	TP73-AS1	ENSG00000227372.12	15.97	7.92	11.95	ENCSR985KAT
K562	TP73-AS1	ENSG00000227372.12	17.99	13.16	15.57	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TP73-AS1 is not avaliable on ENCORE database.

Proteins bound to RNA

TP73-AS1 RNA is bound by 20 proteins.

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eCLIP assay for TP73-AS1 is not avaliable on ENCORE database.

20 proteins are bound to TP73-AS1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	3656757	3656769	-	intron-Distal,intron-Proximal	5.44475	13.75908	K562	AQR
chr1	3655744	3655906	-	intron-Distal	4.11533	12.76501	K562	FUS
chr1	3656769	3656796	-	intron-Distal,intron-Proximal	4.76014	11.83800	K562	AQR
chr1	3652898	3653005	-	intron-Distal	5.93887	11.78880	HepG2	XPO5
chr1	3662308	3662389	-	intron-Distal	4.53721	9.04978	K562	RBM15
chr1	3655702	3655893	-	intron-Distal	3.37889	8.89344	K562	SAFB
chr1	3656783	3656953	-	intron-Distal,intron-Proximal	3.64364	8.62339	HepG2	GRWD1
chr1	3663816	3663884	-	intron-Distal	5.11645	8.17272	HepG2	DDX3X
chr1	3656693	3656747	-	intron-Distal,intron-Proximal	3.10780	7.61554	K562	AQR
chr1	3654387	3654448	-	intron-Distal,intron-Proximal	4.16263	7.30031	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 34 entries

eCLIP assay for TP73-AS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TP73-AS1 is not available on ENCORE database.
74 RBPs can affect the levels of TP73-AS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TP73-AS1 is not available on ENCORE database.

74 RBPs can affect the gene expression of TP73-AS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TP73-AS1	ENSG00000227372.6	553.63350	1044.18370	-0.91540	15.81180	13.85940	K562	U2AF2
TP73-AS1	ENSG00000227372.6	499.55900	881.99230	-0.82010	10.51540	9.45370	HepG2	PUF60
TP73-AS1	ENSG00000227372.6	2090.52140	3334.27630	-0.67350	10.49850	8.89490	K562	PUF60
TP73-AS1	ENSG00000227372.6	506.08590	765.64360	-0.59730	8.96820	8.12810	HepG2	ZNF622
TP73-AS1	ENSG00000227372.6	906.30730	1413.40840	-0.64110	9.20670	7.92650	K562	SRSF1
TP73-AS1	ENSG00000227372.6	777.69700	1282.24120	-0.72140	8.39020	7.08070	K562	PRPF8
TP73-AS1	ENSG00000227372.6	1386.54430	1966.55560	-0.50420	7.68890	6.73040	K562	RBM15
TP73-AS1	ENSG00000227372.6	664.29240	936.27510	-0.49510	7.22290	6.35810	HepG2	PUM1
TP73-AS1	ENSG00000227372.6	522.37640	758.67090	-0.53840	7.27120	6.28780	HepG2	CKAP4
TP73-AS1	ENSG00000227372.6	1663.50150	2500.33740	-0.58790	6.88250	6.02420	K562	AQR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 87 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TP73-AS1 is not available on ENCORE database.

8 RBPs can affect the splicing of TP73-AS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TP73-AS1	ENSG00000227372.6	chr1	-	3658993	3659081	3656796	3656951	3659367	3659422	0.18600	0.00000	0.00098	included	K562	APOBEC3C
A3SS	TP73-AS1	ENSG00000227372.6	chr1	-	3659367	3659521	3659367	3659475	3659624	3659754	-0.33100	0.00004	0.01033	shorter	K562	PRPF8
SE	TP73-AS1	ENSG00000227372.6	chr1	-	3658993	3659081	3656796	3656951	3659367	3659422	-0.11900	0.00054	0.07315	excluded	K562	LARP4
A3SS	TP73-AS1	ENSG00000227372.6	chr1	-	3659367	3659547	3659367	3659475	3659624	3659754	0.30300	0.00076	0.08106	longer	K562	RBM15
A3SS	TP73-AS1	ENSG00000227372.6	chr1	-	3659367	3659521	3659367	3659475	3659624	3659754	0.27300	0.00079	0.09679	longer	K562	UTP18
A3SS	TP73-AS1	ENSG00000227372.6	chr1	-	3659624	3659864	3659624	3659754	3662170	3663886	0.05200	0.00167	0.01098	longer	K562	AQR
A3SS	TP73-AS1	ENSG00000227372.6	chr1	-	3659367	3659547	3659367	3659475	3659624	3659754	0.30300	0.00182	0.07699	longer	K562	PUS1
RI	TP73-AS1	ENSG00000227372.6	chr1	-	3652547	3656951	3652547	3654418	3656796	3656951	-0.32600	0.00294	0.05797	excluded	K562	HNRNPC

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TP73-AS1

General Information

Functions

Localization

Domains (AlphaFold: TP73-AS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TP73-AS1 is not avaliable on ENCORE database.

20 proteins are bound to TP73-AS1 RNA:

eCLIP assay for TP73-AS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TP73-AS1 is not available on ENCORE database.

74 RBPs can affect the gene expression of TP73-AS1 :

The Knockdown/knockout RNA-Seq assay for TP73-AS1 is not available on ENCORE database.

8 RBPs can affect the splicing of TP73-AS1 :

The Knockdown/knockout RNA-Seq assay for TP73-AS1 is not avaliable on ENCORE database.