FAM20B

General Information

Gene Name       : FAM20B
Gene ID             : ENSG00000116199.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM20B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM20BENSG00000116199.1114.6211.8313.22ENCSR000AEF
HepG2FAM20BENSG00000116199.1112.5518.4815.52ENCSR985KAT
K562FAM20BENSG00000116199.1127.2628.8628.06ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM20B is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM20B RNA is bound by 32 proteins.  







eCLIP assay for FAM20B is not avaliable on ENCORE database.





32 proteins are bound to FAM20B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1179012846179012875+3'-UTR,5'-UTR,intron-Proximal3.356786.46262K562DDX3X
chr1179012975179012984+3'-UTR,5'-UTR,CDS3.6018111.18253K562YBX3
chr1179041851179041951+3'-UTR4.0221029.11558K562UPF1
chr1179012844179012908+3'-UTR,5'-UTR,intron-Proximal3.039303.11583K562UCHL5
chr1179044814179044892+3'-UTR5.414295.78061HepG2LIN28B
chr1179012892179012950+3'-UTR,5'-UTR5.8531117.12321K562YBX3
chr1179044806179044889+3'-UTR6.8478429.75574K562LIN28B
chr1179043534179043559+3'-UTR3.219597.98960K562YBX3
chr1179045361179045440+3'-UTR4.831945.76838K562IGF2BP1
chr1179041882179041952+3'-UTR5.262618.76639K562LIN28B
chr1179012950179012971+3'-UTR,5'-UTR3.439333.87559K562YBX3
chr1179042735179042803+3'-UTR4.8768517.24752K562UPF1
chr1179043762179043807+3'-UTR3.240593.78871K562IGF2BP1
chr1179012849179012946+3'-UTR,5'-UTR,intron-Proximal3.560024.34695HepG2BCLAF1
chr1179041879179041959+3'-UTR3.4420413.16140K562FAM120A
chr1179044024179044121+3'-UTR3.086244.66189HepG2UPF1
chr1179044624179044674+3'-UTR3.671146.84689K562UPF1
chr1179043028179043088+3'-UTR3.4672910.75033K562YBX3
chr1179045090179045159+3'-UTR5.3102827.32572K562PUM2
chr1179045249179045323+3'-UTR3.200734.05694K562IGF2BP1
chr1179043559179043576+3'-UTR3.596248.91050K562YBX3
chr1179042846179042888+3'-UTR3.979583.06194K562ILF3
chr1179041713179041769+3'-UTR4.026653.19904K562TIA1
chr1179012902179013003+3'-UTR,5'-UTR,CDS3.4760810.65333K562DDX3X
chr1179041521179041594+3'-UTR4.058203.76686K562IGF2BP1
chr1179042587179042769+3'-UTR5.0074216.56087HepG2UPF1
chr1179044910179045049+3'-UTR3.2206210.52243K562FAM120A
chr1179042014179042081+3'-UTR3.9826115.92201K562UPF1
chr1179042123179042195+3'-UTR3.6639812.16237K562FAM120A
chr1179042027179042095+3'-UTR4.0524118.42346K562FAM120A
chr1178995137178995197+5'-UTR,intron-Distal3.8099612.71489HepG2DDX3X
chr1178995033178995137+5'-UTR,intron-Distal,intron-Proximal4.5697620.87189HepG2DDX3X
chr1178995197178995235+5'-UTR,intron-Distal,intron-Proximal4.725008.90399HepG2DDX3X
chr1178995061178995136+5'-UTR,intron-Distal,intron-Proximal3.862888.71628K562AATF
chr1178995063178995147+5'-UTR,intron-Distal,intron-Proximal3.039267.22779K562NCBP2
chr1178995063178995235+5'-UTR,intron-Distal,intron-Proximal5.2881826.25545K562DDX3X
chr1178995146178995223+5'-UTR,intron-Distal4.197074.12172HepG2GRSF1
chr1178995156178995225+5'-UTR,intron-Distal4.026213.33639K562METAP2
chr1178995029178995146+5'-UTR,intron-Distal,intron-Proximal3.538234.71645HepG2GRSF1
chr1178995062178995172+5'-UTR,intron-Distal,intron-Proximal4.3685010.51564K562GEMIN5
chr1178995032178995178+5'-UTR,intron-Distal,intron-Proximal3.240603.80339HepG2PRPF4
chr1178995105178995207+5'-UTR,intron-Distal3.058033.76473K562DROSHA
chr1179041033179041088+CDS,intron-Proximal3.699875.55508K562BUD13
chr1179012984179013033+CDS3.9393314.53335K562YBX3
chr1179023706179023719+CDS4.347755.64683K562YBX3
chr1179033395179033445+CDS,intron-Proximal5.211775.43043K562EFTUD2
chr1179019396179019466+CDS,intron-Proximal3.502464.25142K562BUD13
chr1179023672179023697+CDS3.005873.07714K562YBX3
chr1179033381179033456+CDS,intron-Proximal5.089945.90023K562SF3B4
chr1179033379179033509+CDS,intron-Proximal3.335204.63145K562BUD13
chr1179041157179041206+CDS3.730296.42513K562YBX3
chr1179013173179013239+CDS3.681733.04831K562RBM15
chr1179023719179023744+CDS3.716245.37252K562YBX3
chr1178998408178998534+intron-Distal4.294803.55640HepG2QKI
chr1178995658178995760+intron-Distal4.249614.28571K562HNRNPM
chr1179008297179008403+intron-Distal4.553454.78128K562HNRNPM
chr1178996870178996951+intron-Distal3.305933.92720K562TARDBP
chr1179019504179019601+intron-Distal,intron-Proximal4.300456.99120K562AQR
chr1179022116179022255+intron-Distal4.254884.14103K562KHSRP
chr1179000036179000102+intron-Distal3.715654.82429K562TARDBP
chr1179036074179036126+intron-Distal,intron-Proximal3.995623.12843K562PRPF8
chr1178995354178995496+intron-Distal3.589253.73797K562CSTF2T
chr1178995773178995826+intron-Distal4.306925.19780K562NONO
chr1179010823179010955+intron-Distal3.433823.22046K562AKAP8L
chr1179010869179010997+intron-Distal5.041234.38825K562DROSHA
chr1178995674178995756+intron-Distal5.030928.79830K562NONO
chr1178995343178995508+intron-Distal3.378994.21158HepG2CSTF2T
chr1179010847179010974+intron-Distal4.457734.04290K562CSTF2T
chr1178995451178995615+intron-Distal3.889469.97692K562NONO
chr1178995328178995451+intron-Distal,intron-Proximal5.175807.09445K562NONO
chr1178995248178995354+intron-Distal,intron-Proximal3.533733.73797K562CSTF2T
chr1179019788179019869+intron-Distal3.689603.06150K562KHSRP
chr1178995828178995912+intron-Distal5.2135810.03902K562NONO
chr1178995946178995997+intron-Distal4.283674.48497K562NONO
chr1178995771178995850+intron-Distal3.124023.01436K562CSTF2T
chr1179004925179005012+intron-Distal4.594556.25975K562TARDBP
chr1178995341178995491+intron-Distal4.977597.15444K562XRN2
chr1178995245178995474+intron-Distal,intron-Proximal4.9039821.41618K562AATF
chr1179033233179033236+intron-Proximal5.077074.65563K562AQR
chr1179033236179033276+intron-Proximal4.547075.97994K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM20B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM20B is not available on ENCORE database.

  • 117 RBPs can affect the levels of FAM20B.  








The Knockdown/knockout RNA-Seq assay for FAM20B is not available on ENCORE database.





117 RBPs can affect the gene expression of FAM20B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM20BENSG00000116199.71174.544901659.09580-0.498304.371803.20790HepG2ABCF1
FAM20BENSG00000116199.71174.041401599.81720-0.446408.010507.08480HepG2ACO1
FAM20BENSG00000116199.71831.827402959.18280-0.691904.538303.87920HepG2AKAP1
FAM20BENSG00000116199.71334.843002003.00160-0.585504.734603.38760HepG2AKAP8
FAM20BENSG00000116199.7863.320901607.38390-0.8967024.7317022.78970HepG2AKAP8L
FAM20BENSG00000116199.7890.783401640.94490-0.881404.349502.21220HepG2APOBEC3C
FAM20BENSG00000116199.71744.648502448.58430-0.489003.139802.30270HepG2ASCC1
FAM20BENSG00000116199.71794.580202379.19160-0.406807.188206.16580HepG2AUH
FAM20BENSG00000116199.7823.941901335.63530-0.696905.606004.25370HepG2BCCIP
FAM20BENSG00000116199.71249.003401550.34530-0.311802.998502.19760HepG2CALR
FAM20BENSG00000116199.71624.967802326.28850-0.517603.222802.39110HepG2CIRBP
FAM20BENSG00000116199.71005.102401757.28680-0.806006.195005.05070HepG2CNOT7
FAM20BENSG00000116199.7588.18080825.18910-0.488503.491402.29570HepG2CSTF2
FAM20BENSG00000116199.7901.350001479.62950-0.7151018.9786017.25540HepG2DDX19B
FAM20BENSG00000116199.7816.543501361.23070-0.7373013.7230011.48480HepG2DDX1
FAM20BENSG00000116199.7438.432501357.32520-1.6303041.3253039.17400HepG2DDX21
FAM20BENSG00000116199.71550.905402834.90720-0.870207.202106.23790HepG2DDX3X
FAM20BENSG00000116199.7879.680101193.48700-0.440103.467801.95110HepG2DDX52
FAM20BENSG00000116199.7962.003701313.14270-0.448902.535101.79090HepG2DDX55
FAM20BENSG00000116199.7740.599902434.69320-1.7170019.9670018.51110HepG2DDX6
FAM20BENSG00000116199.71294.850501530.60720-0.241302.407101.76790HepG2DKC1
FAM20BENSG00000116199.7719.212601334.75210-0.8921019.7975018.09750HepG2DNAJC21
FAM20BENSG00000116199.71113.560001323.02300-0.248702.901202.23560HepG2DNAJC2
FAM20BENSG00000116199.71003.820801424.12330-0.504603.078002.10850HepG2EEF2
FAM20BENSG00000116199.7719.976602341.07620-1.7012018.0000016.57790HepG2EIF2S1
FAM20BENSG00000116199.7867.010401156.15470-0.415202.748001.84820HepG2EIF3D
FAM20BENSG00000116199.71011.147601281.56890-0.341903.053001.92430HepG2EIF3G
FAM20BENSG00000116199.71928.341702587.42880-0.424202.433601.83240HepG2EIF4A3
FAM20BENSG00000116199.7851.764602518.72040-1.5642015.3417013.80120HepG2EIF4B
FAM20BENSG00000116199.72245.529002731.64800-0.282703.744803.06280HepG2ETF1
FAM20BENSG00000116199.7708.746201093.07350-0.625004.962603.30000HepG2FKBP4
FAM20BENSG00000116199.71551.287902609.80720-0.750506.291905.27480HepG2FXR1
FAM20BENSG00000116199.71593.610002421.39970-0.603504.209103.39720HepG2G3BP1
FAM20BENSG00000116199.7636.315801029.43140-0.694006.745305.34970HepG2GEMIN5
FAM20BENSG00000116199.71050.145901415.73080-0.431003.191602.09480HepG2GNB2L1
FAM20BENSG00000116199.7406.324601322.41290-1.7025032.5661030.65700HepG2GPKOW
FAM20BENSG00000116199.7861.994701485.11000-0.784806.832504.61990HepG2HNRNPA0
FAM20BENSG00000116199.71032.291801347.54000-0.384503.340102.63840HepG2HNRNPA1
FAM20BENSG00000116199.7991.878301522.09610-0.617803.904702.09420HepG2HNRNPD
FAM20BENSG00000116199.72020.375701779.351000.183202.014101.42710HepG2HNRNPL
FAM20BENSG00000116199.7922.635201155.83840-0.325102.648101.71560HepG2HNRNPM
FAM20BENSG00000116199.71073.154401488.99680-0.472508.046707.05320HepG2HNRNPU
FAM20BENSG00000116199.71796.463102461.44960-0.454302.580501.92670HepG2IGF2BP2
FAM20BENSG00000116199.71472.900102309.36120-0.648802.638001.67960HepG2IGF2BP3
FAM20BENSG00000116199.71081.824501713.00790-0.663104.994403.19390HepG2ILF3
FAM20BENSG00000116199.71264.746001673.58780-0.404102.550501.41740HepG2KHDRBS1
FAM20BENSG00000116199.71705.213502475.51770-0.537803.655602.48410HepG2KHSRP
FAM20BENSG00000116199.71656.542602184.42380-0.399102.338201.57930HepG2LARP4
FAM20BENSG00000116199.71112.590101456.38850-0.388503.056801.78050HepG2LIN28B
FAM20BENSG00000116199.71266.543502610.71470-1.0435010.196508.96100HepG2MAGOH
FAM20BENSG00000116199.71698.579202625.45670-0.628204.684203.88040HepG2MATR3
FAM20BENSG00000116199.7769.009201210.07970-0.654003.086501.97310HepG2METAP2
FAM20BENSG00000116199.7812.225901355.81060-0.7392010.850109.35830HepG2MSI2
FAM20BENSG00000116199.71432.438601138.491000.331302.670101.47630HepG2NAA15
FAM20BENSG00000116199.71285.169402687.40670-1.064308.152407.09190HepG2NCBP2
FAM20BENSG00000116199.71649.995402393.79700-0.536803.405502.60970HepG2PABPC4
FAM20BENSG00000116199.71121.406901473.82820-0.394305.506904.36930HepG2PARN
FAM20BENSG00000116199.71613.673902192.20720-0.442008.458907.49240HepG2PCBP1
FAM20BENSG00000116199.7334.435001013.33220-1.5993022.2207020.26350HepG2PRPF8
FAM20BENSG00000116199.71791.844502230.61770-0.316004.821404.14230HepG2PTBP1
FAM20BENSG00000116199.71400.518201848.89570-0.400704.200103.48310HepG2PUF60
FAM20BENSG00000116199.71583.021301961.23560-0.309103.241002.51460HepG2PUM2
FAM20BENSG00000116199.71857.448201629.526400.188801.995601.45370HepG2PUS1
FAM20BENSG00000116199.7653.127202283.14860-1.8056083.0021080.94720HepG2RBM22
FAM20BENSG00000116199.71731.742702192.54620-0.340403.481002.73160HepG2RBM25
FAM20BENSG00000116199.71129.683901672.29010-0.565905.417304.01540HepG2RBM27
FAM20BENSG00000116199.7959.744301357.97080-0.500703.419502.23950HepG2RCC2
FAM20BENSG00000116199.71545.417502482.49250-0.6838018.3510017.19580HepG2NELFE
FAM20BENSG00000116199.71849.570802312.05140-0.322004.900204.11030HepG2RECQL
FAM20BENSG00000116199.7611.938701124.91190-0.878409.821908.75080HepG2RPS19
FAM20BENSG00000116199.71108.915401542.34020-0.476004.181403.20610HepG2RPS2
FAM20BENSG00000116199.71182.561401763.75780-0.576704.279503.28550HepG2RPS3A
FAM20BENSG00000116199.7825.751201574.34550-0.9310013.6934011.33430HepG2RPS5
FAM20BENSG00000116199.72610.267301724.747400.597703.992902.14360HepG2RTF1
FAM20BENSG00000116199.7779.804101129.14700-0.534004.382703.21130HepG2SERBP1
FAM20BENSG00000116199.71569.426901249.102200.329202.520501.84520HepG2SF3B1
FAM20BENSG00000116199.71783.137002322.42400-0.381206.525905.68040HepG2SF3B4
FAM20BENSG00000116199.71188.934601546.32860-0.379206.598405.67060HepG2SMN1
FAM20BENSG00000116199.72239.785702578.72580-0.203302.672002.17630HepG2SRFBP1
FAM20BENSG00000116199.72031.877102424.08210-0.254603.114002.62020HepG2SRSF1
FAM20BENSG00000116199.71432.449101825.46700-0.349805.235104.41640HepG2SRSF5
FAM20BENSG00000116199.71849.194602238.93320-0.275903.897803.31230HepG2SSB
FAM20BENSG00000116199.7981.952601533.99310-0.643605.328603.75640HepG2STIP1
FAM20BENSG00000116199.71613.873502076.10010-0.363306.704905.81050HepG2SUCLG1
FAM20BENSG00000116199.7915.732001307.31440-0.513603.243502.51850HepG2SUPV3L1
FAM20BENSG00000116199.71629.949202178.78810-0.418706.472805.67750HepG2TAF15
FAM20BENSG00000116199.71187.231102134.28370-0.846204.476103.14280HepG2TBRG4
FAM20BENSG00000116199.7838.605601446.76740-0.7868014.5866013.59770HepG2TIAL1
FAM20BENSG00000116199.71099.879901459.77690-0.408406.205805.42220HepG2TRIM56
FAM20BENSG00000116199.71445.650701911.81970-0.403202.948802.08700HepG2UBE2L3
FAM20BENSG00000116199.7322.13310772.34000-1.2616017.0883015.23760HepG2UCHL5
FAM20BENSG00000116199.71304.975001544.53850-0.243202.774202.07300HepG2UPF1
FAM20BENSG00000116199.7824.871001197.36620-0.537602.591201.62130HepG2UPF2
FAM20BENSG00000116199.71276.965901491.19150-0.223702.228301.67790HepG2UTP3
FAM20BENSG00000116199.71110.312501579.75640-0.508703.376102.15740HepG2XPO5
FAM20BENSG00000116199.7861.286201286.90460-0.579304.585203.66060HepG2XRN2
FAM20BENSG00000116199.71760.782701362.109900.370306.434105.48020HepG2ZC3H8
FAM20BENSG00000116199.73272.188103866.05740-0.240603.552902.92340K562AGGF1
FAM20BENSG00000116199.73148.576504022.77580-0.353503.672702.91620K562AKAP8L
FAM20BENSG00000116199.73654.400304903.89090-0.424305.896903.97760K562APOBEC3C
FAM20BENSG00000116199.73086.104302250.599100.455404.693503.54610K562BOP1
FAM20BENSG00000116199.73122.367502392.996200.383704.708203.68850K562CPSF6
FAM20BENSG00000116199.710188.233606832.828100.5762013.7296011.66910K562CELF1
FAM20BENSG00000116199.73687.763704324.67180-0.229803.123102.43660K562DDX47
FAM20BENSG00000116199.7934.651301310.44060-0.487602.472201.52500K562EIF3A
FAM20BENSG00000116199.72340.894702816.88140-0.267003.270402.40780K562EIF3G
FAM20BENSG00000116199.76418.577505557.477100.207702.900901.94050K562EIF4G2
FAM20BENSG00000116199.72997.244202434.887400.299702.434401.62990K562FMR1
FAM20BENSG00000116199.72563.422102063.817400.312702.280301.45510K562FTO
FAM20BENSG00000116199.72476.728403443.03720-0.475208.727107.15120K562HNRNPU
FAM20BENSG00000116199.72635.946701950.919600.434102.945201.97860K562KRR1
FAM20BENSG00000116199.71779.605802361.33150-0.408004.669702.60650K562LSM11
FAM20BENSG00000116199.74157.375103623.376200.198203.862702.99760K562NSUN2
FAM20BENSG00000116199.72005.993702607.43240-0.378303.114501.57640K562NUSAP1
FAM20BENSG00000116199.74926.421403475.489100.503202.615801.42450K562PABPC1
FAM20BENSG00000116199.71665.144802667.39530-0.679804.222603.29710K562PRPF8
FAM20BENSG00000116199.71897.730302374.47640-0.323302.829701.91300K562PSIP1
FAM20BENSG00000116199.74285.378103551.182100.271002.379501.75600K562PTBP1
FAM20BENSG00000116199.77787.251006449.219800.271903.546702.32840K562PUM1
FAM20BENSG00000116199.73300.297903887.19030-0.236102.668102.08430K562RBM15
FAM20BENSG00000116199.71604.208302166.32590-0.433405.273403.89810K562RCC2
FAM20BENSG00000116199.72515.560003334.10970-0.406404.659102.34590K562RECQL
FAM20BENSG00000116199.71506.054002717.54930-0.851505.291204.15830K562RPS19
FAM20BENSG00000116199.74774.028803575.240800.417108.407507.04550K562SF3A3
FAM20BENSG00000116199.72867.498602172.930600.400103.095402.06470K562SF3B1
FAM20BENSG00000116199.71612.200202053.62700-0.349103.136202.02780K562SRFBP1
FAM20BENSG00000116199.72664.643403287.28290-0.303002.306801.36320K562SRSF5
FAM20BENSG00000116199.71830.247902426.21930-0.406704.154602.94730K562TRIM56
FAM20BENSG00000116199.74156.111203286.328000.338704.402603.39430K562U2AF2
FAM20BENSG00000116199.76313.382905159.993200.290903.019401.66750K562WRN
FAM20BENSG00000116199.76377.296604905.338400.378504.370303.24480K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM20B is not available on ENCORE database.





1 RBPs can affect the splicing of FAM20B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSFAM20BENSG00000116199.7chr1+1790331661790333531790331661790332331790334391790336310.073000.000400.04089longerK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM20B is not avaliable on ENCORE database.