LRRCC1

General Information

Gene Name       : LRRCC1
Gene ID             : ENSG00000133739.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LRRCC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LRRCC1ENSG00000133739.1510.537.549.04ENCSR000AEF
HepG2LRRCC1ENSG00000133739.153.446.284.86ENCSR985KAT
K562LRRCC1ENSG00000133739.1514.6719.0316.85ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LRRCC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LRRCC1 RNA is bound by 5 proteins.  







eCLIP assay for LRRCC1 is not avaliable on ENCORE database.





5 proteins are bound to LRRCC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr88604402686044071+3'-UTR,CDS3.963303.32022K562UCHL5
chr88602516586025239+5'-UTR,CDS,intron-Proximal3.882607.00273K562YBX3
chr88602762886027674+5'-UTR,CDS,intron-Distal5.232917.88172K562LIN28B
chr88602240086022416+5'-UTR,CDS,intron-Proximal4.364345.37961K562YBX3
chr88601946286019554+5'-UTR,CDS4.614454.66602K562DDX3X
chr88601955486019623+CDS4.000633.47325K562DDX3X
chr88604531886045380+intron-Distal4.504284.40618K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LRRCC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LRRCC1 is not available on ENCORE database.

  • 119 RBPs can affect the levels of LRRCC1.  








The Knockdown/knockout RNA-Seq assay for LRRCC1 is not available on ENCORE database.





119 RBPs can affect the gene expression of LRRCC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LRRCC1ENSG00000133739.11108.62260187.59300-0.788304.283603.34350HepG2AKAP8L
LRRCC1ENSG00000133739.11142.72140245.81780-0.784404.850203.98230HepG2AUH
LRRCC1ENSG00000133739.1178.03060196.15060-1.329903.073102.12400HepG2BCLAF1
LRRCC1ENSG00000133739.1162.87960536.55910-3.0931053.0402051.08460HepG2BOP1
LRRCC1ENSG00000133739.11119.31340186.67330-0.645803.236402.52770HepG2CKAP4
LRRCC1ENSG00000133739.11244.00150492.60350-1.013509.311408.12300HepG2CPSF6
LRRCC1ENSG00000133739.11163.65860278.85330-0.768806.161805.11760HepG2DAZAP1
LRRCC1ENSG00000133739.1194.20960144.32760-0.615401.857801.33460HepG2DDX3X
LRRCC1ENSG00000133739.11317.24880559.38320-0.818202.163401.30290HepG2DDX59
LRRCC1ENSG00000133739.11167.62610261.19100-0.639903.284402.19130HepG2DDX5
LRRCC1ENSG00000133739.1146.05780124.00580-1.428905.603604.75160HepG2DDX6
LRRCC1ENSG00000133739.1190.95740156.38360-0.781803.255902.19540HepG2DHX30
LRRCC1ENSG00000133739.11107.49100162.13510-0.593002.378201.72030HepG2DNAJC21
LRRCC1ENSG00000133739.1189.96660160.72240-0.837104.381003.59420HepG2DNAJC2
LRRCC1ENSG00000133739.1174.07480119.18460-0.686101.918401.41440HepG2EIF2S1
LRRCC1ENSG00000133739.11188.11030263.50870-0.486302.228101.49180HepG2EIF4G2
LRRCC1ENSG00000133739.11305.14650222.961600.452602.313901.30990HepG2ESF1
LRRCC1ENSG00000133739.11183.18770282.21100-0.623503.368802.71510HepG2ETF1
LRRCC1ENSG00000133739.11412.11430558.44030-0.438402.075001.51670HepG2GPKOW
LRRCC1ENSG00000133739.1159.85780182.07960-1.605009.473608.25340HepG2HNRNPC
LRRCC1ENSG00000133739.11126.93500269.70610-1.087303.497602.69870HepG2HNRNPF
LRRCC1ENSG00000133739.11148.70070254.02540-0.772605.551504.62600HepG2HNRNPL
LRRCC1ENSG00000133739.11241.88580532.92660-1.1396011.5269010.35190HepG2HNRNPLL
LRRCC1ENSG00000133739.11122.23930180.87530-0.565302.491501.91550HepG2HNRNPU
LRRCC1ENSG00000133739.11128.76730265.59170-1.044403.298802.51370HepG2IGF2BP1
LRRCC1ENSG00000133739.11117.17080170.68310-0.542702.342901.40370HepG2KIF1C
LRRCC1ENSG00000133739.11234.73570503.72900-1.101603.019202.14810HepG2LARP4
LRRCC1ENSG00000133739.11272.14580133.702201.025305.802504.91380HepG2MATR3
LRRCC1ENSG00000133739.1166.07200136.84680-1.050504.068003.30470HepG2NCBP2
LRRCC1ENSG00000133739.11202.26290276.50830-0.451102.357201.65430HepG2NOL12
LRRCC1ENSG00000133739.11165.12360116.859000.498701.912601.44170HepG2PTBP1
LRRCC1ENSG00000133739.11156.36880235.88050-0.593102.853402.32890HepG2RBM22
LRRCC1ENSG00000133739.11263.70940130.054101.019707.091106.29460HepG2NELFE
LRRCC1ENSG00000133739.11215.60020121.125300.831804.635803.86640HepG2RECQL
LRRCC1ENSG00000133739.11110.07520290.41630-1.399605.229304.32900HepG2RPLP0
LRRCC1ENSG00000133739.1184.7482039.692801.094202.987002.15780HepG2RPS3A
LRRCC1ENSG00000133739.1177.00650169.46810-1.138002.362101.62950HepG2RRP9
LRRCC1ENSG00000133739.11361.79110203.529900.829804.095102.21730HepG2RTF1
LRRCC1ENSG00000133739.11161.30900261.07240-0.694603.220302.49170HepG2SF3A3
LRRCC1ENSG00000133739.11227.77810527.51270-1.2116013.6092012.16720HepG2SF3B1
LRRCC1ENSG00000133739.11191.06510253.05320-0.405402.009401.39400HepG2SLBP
LRRCC1ENSG00000133739.11314.74650586.94300-0.899005.640904.51540HepG2SNRNP70
LRRCC1ENSG00000133739.11143.88770266.42600-0.888806.304605.63230HepG2SRFBP1
LRRCC1ENSG00000133739.11418.01570126.994001.7187024.1443023.04910HepG2SRSF1
LRRCC1ENSG00000133739.11188.32750260.58870-0.468502.497501.89830HepG2SRSF5
LRRCC1ENSG00000133739.11113.31930264.94880-1.225303.808903.01170HepG2SRSF7
LRRCC1ENSG00000133739.11299.70490231.334200.373501.975201.52370HepG2SSB
LRRCC1ENSG00000133739.1190.28080173.66500-0.943803.441902.07090HepG2STAU1
LRRCC1ENSG00000133739.1192.52570220.90140-1.255502.446101.80500HepG2SUPV3L1
LRRCC1ENSG00000133739.11173.24060114.143900.601802.510701.97330HepG2TAF15
LRRCC1ENSG00000133739.11217.50330519.34360-1.2557014.2854012.84160HepG2TARDBP
LRRCC1ENSG00000133739.1170.56750148.09010-1.069402.338601.41600HepG2TFIP11
LRRCC1ENSG00000133739.11116.39220175.73050-0.594402.434901.96050HepG2TIAL1
LRRCC1ENSG00000133739.11121.62850177.32680-0.543902.302401.77840HepG2TRIM56
LRRCC1ENSG00000133739.11173.10540257.83920-0.574802.875001.98230HepG2TUFM
LRRCC1ENSG00000133739.11189.29770536.00690-1.501603.115502.06750HepG2U2AF2
LRRCC1ENSG00000133739.11126.51230231.52990-0.871905.990405.02580HepG2UPF1
LRRCC1ENSG00000133739.11327.12780183.960200.830404.083502.54180HepG2XRCC5
LRRCC1ENSG00000133739.11272.97980200.706600.443602.337801.71360HepG2ZC3H8
LRRCC1ENSG00000133739.1173.23690254.64050-1.7978018.0698016.97500HepG2ZNF622
LRRCC1ENSG00000133739.11532.356201555.11140-1.5466040.4835038.36220K562AGGF1
LRRCC1ENSG00000133739.11640.46160833.09350-0.379403.844802.03510K562AKAP1
LRRCC1ENSG00000133739.111364.064701708.67490-0.325002.885001.87530K562AKAP8
LRRCC1ENSG00000133739.11725.180401618.12520-1.1579017.7639015.83260K562AKAP8L
LRRCC1ENSG00000133739.11585.100701719.84060-1.5555037.6717035.71180K562AQR
LRRCC1ENSG00000133739.11731.24590881.26550-0.269202.163801.31300K562BCLAF1
LRRCC1ENSG00000133739.111225.945801975.48700-0.688308.942507.31930K562BOP1
LRRCC1ENSG00000133739.111747.445603250.66330-0.895507.517105.71520K562CNOT7
LRRCC1ENSG00000133739.111541.076802254.64690-0.5490010.405308.26780K562CPEB4
LRRCC1ENSG00000133739.111379.838502100.49920-0.606209.563108.08620K562CPSF6
LRRCC1ENSG00000133739.11513.54160844.05450-0.716908.984306.99590K562DDX3X
LRRCC1ENSG00000133739.111597.102102332.97770-0.5467011.7681010.52480K562DDX47
LRRCC1ENSG00000133739.11585.50610855.73220-0.547505.094303.14250K562DDX6
LRRCC1ENSG00000133739.11370.00950759.89830-1.0382012.7507010.61580K562EFTUD2
LRRCC1ENSG00000133739.11696.65880927.00350-0.412104.817603.20170K562EIF2S1
LRRCC1ENSG00000133739.11362.07840813.65040-1.1681013.4709011.02210K562EIF3D
LRRCC1ENSG00000133739.11596.35020856.82160-0.522805.841404.69950K562EIF3G
LRRCC1ENSG00000133739.11398.53760881.78470-1.1457018.8026016.47710K562EIF4A3
LRRCC1ENSG00000133739.11587.93520794.05310-0.433602.725701.58480K562EIF4B
LRRCC1ENSG00000133739.11554.71050769.68050-0.472504.560602.83280K562EWSR1
LRRCC1ENSG00000133739.111228.598701646.24360-0.422202.613501.78980K562FIP1L1
LRRCC1ENSG00000133739.111412.457702137.22810-0.597507.193205.78140K562FMR1
LRRCC1ENSG00000133739.111409.871601811.50220-0.361602.773201.85810K562FTO
LRRCC1ENSG00000133739.11707.55860917.01150-0.374103.300702.64820K562FXR1
LRRCC1ENSG00000133739.111419.294301011.250400.488903.260102.48150K562G3BP2
LRRCC1ENSG00000133739.111252.780202005.45160-0.6788010.272008.72520K562GPKOW
LRRCC1ENSG00000133739.111031.636101614.68940-0.646309.201307.80150K562GRSF1
LRRCC1ENSG00000133739.111067.344702421.96640-1.182206.573204.41060K562HNRNPA2B1
LRRCC1ENSG00000133739.11414.09900940.22120-1.1830020.3974018.85690K562HNRNPC
LRRCC1ENSG00000133739.111436.985802108.38480-0.553107.669805.82080K562HNRNPL
LRRCC1ENSG00000133739.11803.768501152.36130-0.519706.796705.39330K562HNRNPU
LRRCC1ENSG00000133739.11682.474901139.11790-0.739106.856304.95480K562IGF2BP2
LRRCC1ENSG00000133739.11685.26060500.468400.453302.892201.36110K562ILF3
LRRCC1ENSG00000133739.111431.238101717.37100-0.262902.341001.59120K562KIF1C
LRRCC1ENSG00000133739.11736.408301197.30740-0.701209.858508.20930K562MAGOH
LRRCC1ENSG00000133739.111209.056001643.83650-0.443205.012103.42460K562MAK16
LRRCC1ENSG00000133739.111253.461701957.54800-0.643109.576707.88020K562METAP2
LRRCC1ENSG00000133739.111754.904302475.03240-0.496105.343103.78080K562MSI2
LRRCC1ENSG00000133739.111050.373101480.22920-0.494908.602107.24930K562MTPAP
LRRCC1ENSG00000133739.11907.835101348.48190-0.570804.209103.05460K562NAA15
LRRCC1ENSG00000133739.11469.15110880.57490-0.908409.330607.13220K562NCBP2
LRRCC1ENSG00000133739.111305.671601644.77120-0.333105.148304.17500K562NSUN2
LRRCC1ENSG00000133739.11750.586201069.68590-0.511103.834501.68740K562PABPC4
LRRCC1ENSG00000133739.11783.138202119.67200-1.436507.833805.87280K562PABPN1
LRRCC1ENSG00000133739.11513.868101065.33260-1.0518017.2049014.67110K562PCBP2
LRRCC1ENSG00000133739.111787.102501336.881700.418703.285602.37930K562PCBP3
LRRCC1ENSG00000133739.111542.406301025.417300.588908.647907.26260K562POLR2G
LRRCC1ENSG00000133739.111152.136001868.64950-0.697705.704604.45480K562PPIG
LRRCC1ENSG00000133739.111091.161302521.17200-1.208205.814903.45840K562PPP1R8
LRRCC1ENSG00000133739.11394.78030739.46780-0.905409.620208.21370K562PRPF8
LRRCC1ENSG00000133739.11748.950001163.24880-0.635208.634807.50390K562PTBP1
LRRCC1ENSG00000133739.113585.551502694.645900.412006.089004.45020K562PUM1
LRRCC1ENSG00000133739.11776.936801605.01340-1.0467018.4170017.04760K562PUS1
LRRCC1ENSG00000133739.11917.325201563.61400-0.769409.714908.62980K562RBM15
LRRCC1ENSG00000133739.11582.110801115.49280-0.9383014.3682012.26820K562RBM22
LRRCC1ENSG00000133739.11488.83340959.87810-0.973509.924707.24830K562RBM25
LRRCC1ENSG00000133739.111415.827702607.91880-0.881303.831901.94610K562RBM39
LRRCC1ENSG00000133739.11548.21430753.25260-0.458402.604801.81470K562RPS19
LRRCC1ENSG00000133739.111133.42190913.723700.310802.290601.31190K562SAFB
LRRCC1ENSG00000133739.111998.364402961.06000-0.567303.395601.67350K562SBDS
LRRCC1ENSG00000133739.111236.25990944.661100.388003.150301.60420K562SDAD1
LRRCC1ENSG00000133739.11645.723201939.14910-1.586408.122505.69540K562SF1
LRRCC1ENSG00000133739.11839.325501622.81530-0.9512022.3295020.21920K562SF3A3
LRRCC1ENSG00000133739.11619.728901052.18730-0.763708.311406.78820K562SF3B4
LRRCC1ENSG00000133739.111228.535302364.99470-0.944904.157002.42820K562SFPQ
LRRCC1ENSG00000133739.11804.478902225.97560-1.468307.582205.18840K562SNRNP200
LRRCC1ENSG00000133739.111243.282501662.59540-0.419307.650206.17700K562SRPK2
LRRCC1ENSG00000133739.11618.241301140.35600-0.8832014.4215012.80340K562SRSF1
LRRCC1ENSG00000133739.11693.678801076.94160-0.634606.984105.20630K562SRSF5
LRRCC1ENSG00000133739.111514.826801167.153100.376104.068502.21550K562SRSF9
LRRCC1ENSG00000133739.111565.732302663.31260-0.766403.296201.69540K562SUPT6H
LRRCC1ENSG00000133739.11449.80280716.00290-0.670705.228603.79170K562SUPV3L1
LRRCC1ENSG00000133739.11588.871601154.14830-0.9708014.2693012.41930K562TARDBP
LRRCC1ENSG00000133739.11721.876701113.29760-0.625007.867706.37580K562TIA1
LRRCC1ENSG00000133739.11803.583401092.39620-0.443003.803702.48890K562TRA2A
LRRCC1ENSG00000133739.11685.10990861.51800-0.330502.267301.42410K562TRIM56
LRRCC1ENSG00000133739.11676.381301012.89200-0.582606.356605.14600K562U2AF2
LRRCC1ENSG00000133739.111368.241101743.97760-0.350105.329304.36700K562UPF1
LRRCC1ENSG00000133739.111101.763601551.70600-0.494009.775008.29180K562WDR43
LRRCC1ENSG00000133739.111642.936902037.73710-0.310702.802301.50090K562WRN
LRRCC1ENSG00000133739.111169.913902269.47900-0.956004.093701.95800K562XPO5
LRRCC1ENSG00000133739.111457.638001937.43650-0.410504.167603.07200K562ZC3H8
LRRCC1ENSG00000133739.111493.197901093.592500.449204.637302.29120K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LRRCC1 is not available on ENCORE database.





5 RBPs can affect the splicing of LRRCC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELRRCC1ENSG00000133739.11chr8+8602182986022035860193818601963486022349860224150.298000.005610.05111includedK562AQR
SELRRCC1ENSG00000133739.11chr8+8602654886026590860251668602533486027334860275100.095000.000080.02338includedK562APOBEC3C
SELRRCC1ENSG00000133739.11chr8+860356478603584186027609860278198603702686037174-0.091000.002190.06833excludedK562HNRNPU
A5SSLRRCC1ENSG00000133739.11chr8+8601947286019953860194728601963486022349860224150.071000.005730.08067longerK562AQR
MXELRRCC1ENSG00000133739.11chr8+8602733486027510860277368602781986025166860253348603564786035841-0.232000.000010.002402includedK562RBFOX2
MXELRRCC1ENSG00000133739.11chr8+8602733486027510860277368602781986025166860253348603564786035841-0.182000.000640.025022includedK562DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LRRCC1 is not avaliable on ENCORE database.