PTCD1

General Information

Gene Name       : PTCD1
Gene ID             : ENSG00000106246.17
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: PTCD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PTCD1ENSG00000106246.170.491.280.89ENCSR000AEF
HepG2PTCD1ENSG00000106246.175.881.593.73ENCSR985KAT
K562PTCD1ENSG00000106246.1715.843.339.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PTCD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PTCD1 RNA is bound by 25 proteins.  







eCLIP assay for PTCD1 is not avaliable on ENCORE database.





25 proteins are bound to PTCD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79901707599017183-3'-UTR,intron-Distal4.397794.93188HepG2UPF1
chr79906373299063785-5'-UTR,CDS,intron-Distal,intron-Proximal4.4003862.31742K562DDX3X
chr79906373399063789-5'-UTR,CDS,intron-Distal,intron-Proximal3.071536.20257K562APOBEC3C
chr79906368299063757-5'-UTR,CDS,intron-Distal4.007319.61107HepG2PRPF8
chr79906368799063751-5'-UTR,CDS,intron-Distal4.549858.69247K562AQR
chr79905770799057792-CDS,intron-Distal,intron-Proximal3.254728.15779K562ZNF800
chr79902148899021546-CDS,intron-Distal4.181614.95438K562YBX3
chr79905779699057817-CDS,intron-Distal,intron-Proximal3.5312043.60750K562DDX3X
chr79905770799057764-CDS,intron-Distal,intron-Proximal4.8650113.57407HepG2LARP4
chr79905771499057726-CDS,intron-Distal3.0867916.46602K562PABPC4
chr79905772899057818-CDS,intron-Distal,intron-Proximal3.4424824.56798K562UCHL5
chr79905770699057735-CDS,intron-Distal,intron-Proximal3.4931415.19420K562APOBEC3C
chr79905770799057715-CDS,intron-Distal,intron-Proximal3.8047813.40812K562UCHL5
chr79905770399057733-CDS,intron-Distal,intron-Proximal4.4454410.49819K562GRWD1
chr79903086399030942-CDS,intron-Distal,intron-Proximal5.7348210.44569K562AQR
chr79905770899057802-CDS,intron-Distal,intron-Proximal4.0621813.81950K562RPS3
chr79905771199057814-CDS,intron-Distal3.3541118.34271K562GEMIN5
chr79902666799026776-CDS,intron-Distal,intron-Proximal3.658075.73990HepG2PRPF8
chr79905773599057793-CDS,intron-Distal3.3990516.39473K562APOBEC3C
chr79902237299022421-CDS,intron-Distal,intron-Proximal4.704035.35117HepG2PRPF8
chr79905771599057728-CDS,intron-Distal4.1933919.19286K562UCHL5
chr79905770799057727-CDS,intron-Distal,intron-Proximal3.1029511.72988K562DDX55
chr79905770999057817-CDS,intron-Distal,intron-Proximal3.435518.86044HepG2DDX55
chr79905770499057731-CDS,intron-Distal,intron-Proximal3.358344.50748HepG2GRWD1
chr79905772799057800-CDS,intron-Distal3.2222125.52637K562DDX55
chr79905780099057817-CDS,intron-Distal,intron-Proximal3.052119.55204K562DDX55
chr79905686099056886-CDS,intron-Distal3.4961611.30791K562APOBEC3C
chr79905684799056887-CDS,intron-Distal,intron-Proximal3.2033015.92709K562UCHL5
chr79905679299056857-CDS,intron-Distal,intron-Proximal3.2449514.14372K562APOBEC3C
chr79905678899056859-CDS,intron-Distal,intron-Proximal3.0408111.74223K562PABPC4
chr79905679499056853-CDS,intron-Distal,intron-Proximal4.2873315.34321HepG2LARP4
chr79905575999055820-3'-UTR,intron-Distal,intron-Proximal,polyA_site3.559383.48399HepG2CSTF2T
chr79905789499058044-intron-Distal,intron-Proximal3.620295.83959K562KHSRP
chr79905588999055979-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.799296.54919HepG2RPS3
chr79905583999055866-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.276634.48159HepG2LARP4
chr79905614099056207-intron-Distal3.267723.48391K562SMNDC1
chr79902138899021398-intron-Distal,intron-Proximal4.234825.97994K562AQR
chr79905827399058406-intron-Distal4.745696.87697K562NONO
chr79902129999021388-intron-Distal,intron-Proximal4.219398.29266K562AQR
chr79905581699055860-3'-UTR,5'-UTR,intron-Distal,intron-Proximal,polyA_site5.0702654.24944K562PABPC4
chr79905588399055932-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.1197013.65277K562YBX3
chr79905672399056792-CDS,intron-Distal,intron-Proximal3.280035.76569HepG2PRPF8
chr79905677399056855-CDS,intron-Distal,intron-Proximal3.7960035.25839K562RPS3
chr79902080099020959-intron-Distal4.378414.64592HepG2HNRNPM
chr79905593899055978-3'-UTR,5'-UTR,CDS,intron-Distal4.0468518.22619HepG2LARP4
chr79905676999056787-CDS,intron-Distal,intron-Proximal3.008476.06384K562APOBEC3C
chr79905610499056195-intron-Distal4.848086.66303HepG2SF3B4
chr79905586099055921-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.7150033.06350K562PABPC4
chr79905596799055979-CDS,intron-Distal,intron-Proximal3.4312613.14443K562IGF2BP2
chr79905678899056851-CDS,intron-Distal,intron-Proximal3.449075.15615HepG2RPS3
chr79905571799055826-3'-UTR,5'-UTR,intron-Distal,intron-Proximal,polyA_site3.523354.25110K562CSTF2T
chr79903064399030750-intron-Distal,intron-Proximal4.992115.65342K562AQR
chr79905588299055914-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.4034817.71572HepG2LARP4
chr79905686499056887-CDS,intron-Distal,intron-Proximal3.183545.07870K562GRWD1
chr79905677399056787-CDS,intron-Distal,intron-Proximal3.562229.59989HepG2LARP4
chr79905589199055985-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.1086124.04206K562RPS3
chr79905676999056779-CDS,intron-Distal,intron-Proximal3.009257.77399K562IGF2BP2
chr79905590299055941-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.5607482.00183K562IGF2BP2
chr79905686199056887-CDS,intron-Distal,intron-Proximal3.2173716.78587K562ZNF622
chr79903079599030901-intron-Distal,intron-Proximal4.119066.23016HepG2PRPF8
chr79905591499055938-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.1482410.48878HepG2LARP4
chr79905586699055929-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.515033.84718K562METAP2
chr79905586799055902-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.8418566.01882K562IGF2BP2
chr79905681099056887-CDS,intron-Distal,intron-Proximal3.8003010.40982K562ZNF800
chr79905676999056773-CDS,intron-Distal,intron-Proximal4.1049012.76766HepG2LARP4
chr79905613899056216-intron-Distal3.664684.51027K562BUD13
chr79905844799058493-intron-Distal3.597665.62040K562TIA1
chr79905582399055858-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.349733.37451K562APOBEC3C
chr79905594199055967-3'-UTR,5'-UTR,CDS,intron-Distal4.0926922.18168K562IGF2BP2
chr79905586699055882-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.334979.64287HepG2LARP4
chr79905685399056886-CDS,intron-Distal,intron-Proximal5.335149.06009HepG2LARP4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PTCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PTCD1 is not available on ENCORE database.

  • 80 RBPs can affect the levels of PTCD1.  








The Knockdown/knockout RNA-Seq assay for PTCD1 is not available on ENCORE database.





80 RBPs can affect the gene expression of PTCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PTCD1ENSG00000106246.13417.38110215.185700.955703.437602.85340HepG2AKAP1
PTCD1ENSG00000106246.13324.58170247.087000.393502.298301.68340HepG2CKAP4
PTCD1ENSG00000106246.13141.10370222.53700-0.657302.654501.97930HepG2CPSF6
PTCD1ENSG00000106246.13273.62300186.347900.554103.383702.68760HepG2CELF1
PTCD1ENSG00000106246.13354.84270206.073900.783903.116802.45730HepG2DDX3X
PTCD1ENSG00000106246.13147.94730252.71120-0.772402.921001.91750HepG2DDX59
PTCD1ENSG00000106246.13179.93310110.825100.699103.765003.02630HepG2DNAJC2
PTCD1ENSG00000106246.13324.80710187.993800.788803.035402.36660HepG2EIF4A3
PTCD1ENSG00000106246.13317.30950183.162900.792703.261702.51760HepG2EIF4B
PTCD1ENSG00000106246.13324.91830241.499200.428002.144501.40980HepG2EWSR1
PTCD1ENSG00000106246.13377.03740246.272600.614403.203902.38140HepG2FIP1L1
PTCD1ENSG00000106246.13360.12280189.875300.923303.258602.51010HepG2FXR1
PTCD1ENSG00000106246.13186.58950123.583100.594302.288601.48090HepG2GEMIN5
PTCD1ENSG00000106246.13165.45580112.893400.551401.887501.34260HepG2HNRNPA1
PTCD1ENSG00000106246.13186.95430125.569900.574101.947701.35460HepG2HNRNPC
PTCD1ENSG00000106246.13284.45090178.492200.672202.364301.71580HepG2HNRNPK
PTCD1ENSG00000106246.13273.38830169.938200.685804.025702.89840HepG2HNRNPM
PTCD1ENSG00000106246.13219.07080124.739900.812405.143504.33760HepG2HNRNPU
PTCD1ENSG00000106246.13311.91770178.897000.801903.973903.17920HepG2IGF2BP2
PTCD1ENSG00000106246.13386.74010265.581700.542102.493601.70650HepG2LARP4
PTCD1ENSG00000106246.13209.22030133.577400.647202.771101.63500HepG2LARP7
PTCD1ENSG00000106246.13389.42650189.942501.035705.474104.56000HepG2MAGOH
PTCD1ENSG00000106246.13423.32420190.973401.148309.049007.96210HepG2MATR3
PTCD1ENSG00000106246.13386.93110195.445800.985206.066105.14470HepG2NCBP2
PTCD1ENSG00000106246.13297.42370198.653800.582203.737502.84890HepG2NOL12
PTCD1ENSG00000106246.13296.07570221.260000.420102.261101.70210HepG2PCBP1
PTCD1ENSG00000106246.13164.75260111.258600.566302.304301.62460HepG2PPIL4
PTCD1ENSG00000106246.13319.92680225.144300.506802.767402.21990HepG2PTBP1
PTCD1ENSG00000106246.13270.34620189.642000.511402.566501.99010HepG2PUF60
PTCD1ENSG00000106246.13343.06680201.324600.768907.581306.70020HepG2PUM1
PTCD1ENSG00000106246.13339.56980201.170600.755205.567804.62970HepG2PUM2
PTCD1ENSG00000106246.13364.86070251.715300.535504.012703.29620HepG2PUS1
PTCD1ENSG00000106246.13329.76100161.074401.033607.135905.53560HepG2RBM27
PTCD1ENSG00000106246.13238.27150130.799600.865104.333603.00500HepG2RCC2
PTCD1ENSG00000106246.13368.96130250.560600.558203.647803.04350HepG2NELFE
PTCD1ENSG00000106246.13330.67680233.369200.502702.712202.10110HepG2RECQL
PTCD1ENSG00000106246.13220.14340135.097200.704303.349102.68100HepG2RPS19
PTCD1ENSG00000106246.13245.32820148.550400.723703.387402.50290HepG2RPS2
PTCD1ENSG00000106246.13275.70720151.640800.862404.930803.48420HepG2RPS5
PTCD1ENSG00000106246.13157.52380111.088300.503801.876101.32850HepG2SAFB2
PTCD1ENSG00000106246.13374.29290264.000800.503502.134301.54090HepG2SF3A3
PTCD1ENSG00000106246.13239.47680181.860200.397001.945201.33830HepG2SLBP
PTCD1ENSG00000106246.13208.70480129.550900.687803.756803.02690HepG2SMN1
PTCD1ENSG00000106246.13226.17820144.404900.647202.495001.58970HepG2SMNDC1
PTCD1ENSG00000106246.13139.02410265.08580-0.931104.268803.29120HepG2SNRNP70
PTCD1ENSG00000106246.13287.08340461.57030-0.685106.230205.56160HepG2SRFBP1
PTCD1ENSG00000106246.13337.34720244.662700.463302.616202.15270HepG2SRSF1
PTCD1ENSG00000106246.13338.95810187.257300.856004.323803.57220HepG2SRSF5
PTCD1ENSG00000106246.13390.69920212.951700.875409.352308.32360HepG2SUCLG1
PTCD1ENSG00000106246.13140.28390219.92050-0.648603.238102.63830HepG2TAF15
PTCD1ENSG00000106246.13350.78140185.290600.920707.715206.14350HepG2TUFM
PTCD1ENSG00000106246.13424.12160210.689001.009308.393507.29860HepG2U2AF1
PTCD1ENSG00000106246.13280.98020196.139200.518502.023001.31300HepG2UBE2L3
PTCD1ENSG00000106246.13400.51090226.041500.825208.030907.09630HepG2UTP3
PTCD1ENSG00000106246.13171.90890237.22560-0.464602.343901.71880HepG2ZC3H8
PTCD1ENSG00000106246.13425.74000270.214800.655804.654803.07980K562AARS
PTCD1ENSG00000106246.131059.53480718.442300.560405.658003.79170K562APOBEC3C
PTCD1ENSG00000106246.131135.32000783.477500.535004.557503.83870K562AQR
PTCD1ENSG00000106246.131069.32040589.269300.8596017.6824016.16180K562DDX47
PTCD1ENSG00000106246.13467.23530318.657700.552003.168102.18670K562EFTUD2
PTCD1ENSG00000106246.13487.57240263.609600.887102.957201.91400K562EIF3A
PTCD1ENSG00000106246.13490.70320341.042200.524802.614701.61180K562EIF3D
PTCD1ENSG00000106246.13425.76490175.030201.2824015.8085013.84910K562EIF3G
PTCD1ENSG00000106246.13510.81750269.694900.921407.371106.03740K562EIF4A3
PTCD1ENSG00000106246.13330.08570242.876900.442502.689601.55880K562EIF4B
PTCD1ENSG00000106246.13968.60540814.186400.250502.211001.36700K562EIF4G2
PTCD1ENSG00000106246.13781.57090280.471701.4784032.8977030.94030K562FXR1
PTCD1ENSG00000106246.1347.0757085.38690-0.859002.222001.59890K562G3BP2
PTCD1ENSG00000106246.13494.65500362.496200.448402.362701.50560K562HNRNPM
PTCD1ENSG00000106246.13468.88970218.096301.1042013.2067011.25480K562MAGOH
PTCD1ENSG00000106246.13319.09170217.640700.551902.665401.76020K562MATR3
PTCD1ENSG00000106246.13501.24110314.333200.673103.448901.97590K562NONO
PTCD1ENSG00000106246.13287.51580194.035900.567202.890701.89070K562PCBP2
PTCD1ENSG00000106246.13422.67310587.57410-0.475202.762001.93190K562PCBP3
PTCD1ENSG00000106246.13509.46220310.094300.716204.735803.75710K562PRPF8
PTCD1ENSG00000106246.13604.44520211.900601.5121017.9686016.34950K562PTBP1
PTCD1ENSG00000106246.131099.00450888.355700.306902.579601.79230K562PUF60
PTCD1ENSG00000106246.13402.97260203.140400.988109.427907.72450K562RBM22
PTCD1ENSG00000106246.13345.74770213.783700.693504.583703.14040K562NELFE
PTCD1ENSG00000106246.13567.17990315.761700.844906.212304.98120K562RPS19
PTCD1ENSG00000106246.13693.21190401.588700.787508.670706.81600K562SAFB
PTCD1ENSG00000106246.13159.8018088.702100.849104.101503.05400K562SF3B4
PTCD1ENSG00000106246.13325.23440229.289100.504202.536401.56620K562SRFBP1
PTCD1ENSG00000106246.13525.08760207.742901.3377018.3267016.53480K562SRSF1
PTCD1ENSG00000106246.13257.65650168.613100.611602.770101.71830K562SRSF4
PTCD1ENSG00000106246.13297.89850196.221400.602203.364602.18730K562SRSF5
PTCD1ENSG00000106246.13424.45540300.051900.500302.367101.43060K562SUPV3L1
PTCD1ENSG00000106246.13671.49140452.055500.570805.442204.28270K562SYNCRIP
PTCD1ENSG00000106246.13436.66630210.228501.054507.753006.49560K562TARDBP
PTCD1ENSG00000106246.13360.29600202.794600.829102.701801.89420K562TIA1
PTCD1ENSG00000106246.13323.29740199.051100.699604.346502.92470K562TRA2A
PTCD1ENSG00000106246.13688.80650520.438100.404304.104003.08780K562WDR43
PTCD1ENSG00000106246.13491.42270323.615100.602603.793502.29590K562XRN2
PTCD1ENSG00000106246.13644.91100882.75240-0.452902.478301.66940K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PTCD1 is not available on ENCORE database.





1 RBPs can affect the splicing of PTCD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPTCD1ENSG00000106246.13chr7-9902672599026861990267259902682799027210990274290.090000.000000.00001longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PTCD1 is not avaliable on ENCORE database.