RBM48

General Information

Gene Name       : RBM48
Gene ID             : ENSG00000127993.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RBM48)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RBM48ENSG00000127993.1510.549.449.99ENCSR000AEF
HepG2RBM48ENSG00000127993.154.849.016.92ENCSR985KAT
K562RBM48ENSG00000127993.1512.0312.8112.42ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RBM48 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RBM48 RNA is bound by 7 proteins.  







eCLIP assay for RBM48 is not avaliable on ENCORE database.





7 proteins are bound to RBM48 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79216592492166025+3'-UTR,intron-Distal6.0213414.01388HepG2U2AF2
chr79216616192166211+3'-UTR,CDS,intron-Proximal3.947866.17334HepG2U2AF2
chr79216576092165823+3'-UTR,intron-Distal3.786896.17334HepG2U2AF2
chr79215882292158891+5'-UTR,CDS3.045143.55800HepG2BCLAF1
chr79215821392158317+5'-UTR,CDS,intron-Proximal4.385417.53589K562AQR
chr79215823392158309+5'-UTR,CDS,intron-Proximal3.995623.12843K562PRPF8
chr79215820992158278+5'-UTR,CDS,intron-Proximal4.033405.64484HepG2PRPF8
chr79216175692161837+CDS3.728283.14999HepG2GRWD1
chr79216377492163875+CDS4.023405.94293HepG2BCLAF1
chr79216381092163979+CDS4.852105.14565K562UCHL5
chr79216387592163958+CDS3.764124.17155HepG2BCLAF1
chr79216375092163848+CDS4.267633.48187K562RBM15
chr79216174092161814+CDS3.372824.85828HepG2BCLAF1
chr79216185892161933+CDS,intron-Proximal3.027313.93669K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RBM48 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RBM48 is not available on ENCORE database.

  • 42 RBPs can affect the levels of RBM48.  








The Knockdown/knockout RNA-Seq assay for RBM48 is not available on ENCORE database.





42 RBPs can affect the gene expression of RBM48 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RBM48ENSG00000127993.10216.50080303.46190-0.487102.895802.19560HepG2AUH
RBM48ENSG00000127993.10711.00690385.728400.882207.153905.57200HepG2CCAR1
RBM48ENSG00000127993.10563.73470297.712700.921005.891404.77390HepG2CNOT7
RBM48ENSG00000127993.10165.88400235.84290-0.507702.026501.42820HepG2CPSF6
RBM48ENSG00000127993.10285.62490366.52280-0.359801.915301.36160HepG2CELF1
RBM48ENSG00000127993.10351.69380200.500200.810606.045304.70010HepG2DDX24
RBM48ENSG00000127993.10532.05620348.416900.610705.712504.90050HepG2ETF1
RBM48ENSG00000127993.10245.35430166.180700.562002.606101.84250HepG2FUBP3
RBM48ENSG00000127993.10511.75310358.962100.511503.996403.19810HepG2HNRNPL
RBM48ENSG00000127993.10168.04700241.32750-0.522102.760802.15380HepG2HNRNPU
RBM48ENSG00000127993.10272.50900407.03300-0.578802.849102.00790HepG2LARP4
RBM48ENSG00000127993.10300.43870205.794400.545803.115301.82880HepG2LIN28B
RBM48ENSG00000127993.10275.26650390.76400-0.505503.282202.45350HepG2NOL12
RBM48ENSG00000127993.10268.73130373.02630-0.473102.535401.96180HepG2PUF60
RBM48ENSG00000127993.10275.08400395.99310-0.525604.165203.46980HepG2PUM1
RBM48ENSG00000127993.10263.23530395.69810-0.588003.935303.13890HepG2PUM2
RBM48ENSG00000127993.10373.54470291.211600.359101.880501.43200HepG2RBM22
RBM48ENSG00000127993.10414.22530264.918800.644804.539403.69300HepG2RBM25
RBM48ENSG00000127993.10229.14180299.94740-0.388501.830701.37100HepG2NELFE
RBM48ENSG00000127993.10398.08390270.450800.557602.824302.14260HepG2SF3A3
RBM48ENSG00000127993.10574.48230281.019701.031507.297906.02420HepG2SNRNP70
RBM48ENSG00000127993.10423.99610328.912100.366202.394801.91720HepG2SRFBP1
RBM48ENSG00000127993.10459.11430292.893400.648405.501804.89240HepG2SRSF1
RBM48ENSG00000127993.10271.93710368.32020-0.437702.633802.01960HepG2SRSF5
RBM48ENSG00000127993.10303.55720222.149600.450302.055601.44580HepG2SRSF7
RBM48ENSG00000127993.10364.82940285.572200.353301.978201.52630HepG2SSB
RBM48ENSG00000127993.10284.84990418.87210-0.556304.494103.73660HepG2SUCLG1
RBM48ENSG00000127993.10276.45940182.150500.601802.542401.89090HepG2SUPV3L1
RBM48ENSG00000127993.10317.02660231.863600.451201.944201.40710HepG2U2AF1
RBM48ENSG00000127993.10363.79230246.541800.561204.032102.79440HepG2UTP18
RBM48ENSG00000127993.10386.97890231.565300.740705.449904.65670HepG2UTP3
RBM48ENSG00000127993.101600.84760491.054001.7048042.6466040.58770K562AQR
RBM48ENSG00000127993.10213.82910136.219600.650403.035301.92410K562CCAR1
RBM48ENSG00000127993.10819.15800485.731000.7539011.8781010.63080K562DDX47
RBM48ENSG00000127993.10248.61300138.558600.843303.387902.26580K562EIF3A
RBM48ENSG00000127993.10318.54760231.148000.462602.347901.59030K562EIF4A3
RBM48ENSG00000127993.10339.36990240.384400.497403.045902.41490K562FXR1
RBM48ENSG00000127993.10388.18360261.356200.570602.839802.12060K562G3BP2
RBM48ENSG00000127993.10877.13440662.627100.404503.026401.45850K562NOL12
RBM48ENSG00000127993.10477.00460220.326301.1143010.709609.21970K562PRPF8
RBM48ENSG00000127993.10867.38200660.997800.391902.599501.80940K562PUF60
RBM48ENSG00000127993.10347.88020224.456200.632103.392302.48470K562RPS19
RBM48ENSG00000127993.10492.78270347.296700.504704.092203.11230K562SF3A3
RBM48ENSG00000127993.10554.36140309.530500.840608.849107.59280K562SRSF1
RBM48ENSG00000127993.10366.54000254.943200.523703.306602.40920K562SYNCRIP
RBM48ENSG00000127993.10381.64400253.467800.590303.282702.07130K562U2AF1
RBM48ENSG00000127993.10536.65080261.734901.0358013.6188011.82050K562U2AF2
RBM48ENSG00000127993.10466.44700332.068200.490104.212503.18320K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RBM48 is not available on ENCORE database.





7 RBPs can affect the splicing of RBM48 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERBM48ENSG00000127993.10chr7+9216574792165788921637159216428492166164921668480.292000.000390.01796includedK562PRPF8
SERBM48ENSG00000127993.10chr7+921637159216428492161717921618639216616492166848-0.268000.000900.03442excludedK562PRPF8
SERBM48ENSG00000127993.10chr7+9216574792165788921637159216428492166164921668480.234000.001460.03640includedHepG2HNRNPK
SERBM48ENSG00000127993.10chr7+9216574792165862921637159216428492166164921668480.154000.000010.00020includedK562AQR
SERBM48ENSG00000127993.10chr7+921637159216428492161717921618639216616492166848-0.085000.005700.05176excludedK562AQR
SERBM48ENSG00000127993.10chr7+9216574792165788921637159216428492166164921668480.091000.000410.07379includedK562APOBEC3C
SERBM48ENSG00000127993.10chr7+9216574792165788921637159216428492166164921668480.212000.000880.05989includedHepG2HNRNPL
SERBM48ENSG00000127993.10chr7+9216574792165862921637159216428492166164921668480.121000.000940.06053includedK562HNRNPL
SERBM48ENSG00000127993.10chr7+9216574792165788921637159216428492166164921668480.273000.000070.00462includedK562TARDBP
SERBM48ENSG00000127993.10chr7+9216574792165788921637159216428492166164921668480.158000.003330.09763includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RBM48 is not avaliable on ENCORE database.