PARP1

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PARP1	ENSG00000143799.12	159.72	177.11	168.42	ENCSR000AEF
HepG2	PARP1	ENSG00000143799.12	108.21	97.50	102.85	ENCSR985KAT
K562	PARP1	ENSG00000143799.12	189.41	205.57	197.49	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
eCLIP	eCLIP: 4214	ENCSR352IFB	PARP1	HepG2	Released	ENCAB316QKO	ENCSR504UQS
knockdown followed by RNA-seq	PARP1-BGKcLV13-K562	ENCSR226HQD	PARP1	K562	Released		ENCSR712CQC	CRISPR	KD% = 97.2,98.9
knockdown followed by RNA-seq	PARP1-BGHcLV14-HepG2	ENCSR202SRN	PARP1	HepG2	Released		ENCSR750CPT	CRISPR	KD% = 64.3,82.2

RBP	Exp_UID	Cell_Line	ENCODE_ACCESSION	Control_ENCODE_ACCESSION	ENCODE_Antibody_ID	Antibody	Lot_num	Status	Project
PARP1	4214	HepG2	ENCSR352IFB	ENCSR504UQS	ENCAB316QKO	436400	TE268344	Released	ENCODE4

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	K562 Primary Validation	K562 Secondary Validation
PARP1		9532S	10	Submitted, ENCORE2	BGKcLV37-27, Submitted, ENCORE2
PARP1		5625S	1		BGKcLV37-27, Experimented, ENCORE2
PARP1	ENCAB316QKO	436400	TE268344	Released, ENCODE4
PARP1		5625S	13	Submitted, ENCORE2

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
PARP1	K562	CRISPR	ENCSR226HQD	ENCSR712CQC	PARP1-BGKcLV13-49,PARP1-BGKcLV13-50	NT-BGKcLV13-1,NT-BGKcLV13-2	97.2,98.9	Released	ENCODE4
PARP1	K562	CRISPR			PARP1-BGKcLV37-27,PARP1-BGKcLV37-28	NT-BGKcLV37-1,NT-BGKcLV37-2	77.8,73.2	Submitting	ENCORE2
PARP1	HepG2	CRISPR	ENCSR202SRN	ENCSR750CPT	PARP1-BGHcLV14-49,PARP1-BGHcLV14-50	NT-BGHcLV14-1,NT-BGHcLV14-2	64.3,82.2	Released	ENCODE4
PARP1	HepG2	CRISPR			PARP1-BGHcLV36-23,PARP1-BGHcLV36-24	NT-BGHcLV36-1,NT-BGHcLV36-2	,	Submitting	ENCORE2

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PARP1 is not avaliable on ENCORE database.

Proteins bound to RNA

PARP1 RNA is bound by 35 proteins.

eCLIP assay for PARP1 is not avaliable on ENCORE database.

35 proteins are bound to PARP1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	226548610	226548653	-	3'-UTR,intron-Distal	3.14970	4.49644	K562	APOBEC3C
chr1	226579983	226580043	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.66263	5.34337	K562	AQR
chr1	226548599	226548650	-	3'-UTR,intron-Distal	4.82213	17.28377	K562	PABPC4
chr1	226548805	226548882	-	3'-UTR,intron-Distal	3.63150	15.53275	K562	YBX3
chr1	226579934	226580014	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.19883	3.47684	HepG2	GRWD1
chr1	226579992	226580016	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.25086	3.72202	HepG2	G3BP1
chr1	226548842	226548945	-	3'-UTR,intron-Distal,intron-Proximal	4.48243	10.48878	HepG2	LARP4
chr1	226548915	226548934	-	3'-UTR,intron-Distal,intron-Proximal	3.43868	6.99180	K562	NOLC1
chr1	226548884	226548905	-	3'-UTR,intron-Distal,intron-Proximal	3.80289	32.35249	K562	DDX6
chr1	226548994	226549019	-	3'-UTR,intron-Distal,intron-Proximal	5.40974	4.77410	HepG2	SUB1
chr1	226548767	226548805	-	3'-UTR,intron-Distal	3.55656	7.24294	K562	YBX3
chr1	226548804	226548889	-	3'-UTR,intron-Distal	4.43773	77.67524	K562	PABPC4
chr1	226548855	226548911	-	3'-UTR,intron-Distal,intron-Proximal	6.29354	23.65076	HepG2	SUB1
chr1	226548850	226548915	-	3'-UTR,intron-Distal,intron-Proximal	3.53629	6.73551	K562	NOLC1
chr1	226548927	226548994	-	3'-UTR,intron-Distal,intron-Proximal	5.88016	71.56596	HepG2	SUB1
chr1	226549035	226549101	-	3'-UTR,intron-Distal,intron-Proximal	3.92406	13.56287	K562	PUM2
chr1	226548758	226548790	-	3'-UTR,intron-Distal	3.93011	15.38759	K562	PABPC4
chr1	226548750	226548789	-	3'-UTR,intron-Distal	4.84891	5.66249	K562	TIA1
chr1	226548907	226548937	-	3'-UTR,intron-Distal,intron-Proximal	3.58049	17.74273	K562	PABPC4
chr1	226548826	226548884	-	3'-UTR,intron-Distal	3.22035	13.58884	K562	DDX6
chr1	226548845	226548888	-	3'-UTR,intron-Distal	3.90318	6.15751	K562	APOBEC3C
chr1	226548829	226548983	-	3'-UTR,intron-Distal,intron-Proximal	3.79451	8.98009	HepG2	DDX55
chr1	226548888	226548930	-	3'-UTR,intron-Distal,intron-Proximal	4.93674	5.56712	K562	APOBEC3C
chr1	226548889	226548907	-	3'-UTR,intron-Distal,intron-Proximal	4.89088	51.01577	K562	PABPC4
chr1	226579937	226580004	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.34497	19.81483	K562	UCHL5
chr1	226548864	226548935	-	3'-UTR,intron-Distal,intron-Proximal	3.31389	4.33162	K562	TIA1
chr1	226548905	226548938	-	3'-UTR,intron-Distal,intron-Proximal	3.60408	30.16082	K562	DDX6
chr1	226595702	226595756	-	5'-UTR,intron-Distal,intron-Proximal	3.68071	5.34973	K562	GEMIN5
chr1	226595608	226595677	-	5'-UTR,CDS,intron-Distal	3.36245	6.63166	HepG2	DDX3X
chr1	226595603	226595681	-	5'-UTR,CDS,intron-Distal	3.37001	13.31533	K562	UCHL5
chr1	226595613	226595695	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.45584	15.74369	K562	FXR2
chr1	226595560	226595685	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.39721	23.47786	K562	DDX3X
chr1	226595699	226595763	-	5'-UTR,intron-Distal,intron-Proximal	4.20999	16.31967	HepG2	DDX3X
chr1	226595693	226595765	-	5'-UTR,intron-Distal,intron-Proximal	3.84405	5.52031	HepG2	GRWD1
chr1	226595629	226595697	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.50903	4.29728	K562	GEMIN5
chr1	226595607	226595696	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.29603	22.55216	K562	FMR1
chr1	226595540	226595684	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.33181	5.59261	HepG2	GRWD1
chr1	226595695	226595763	-	5'-UTR,intron-Distal,intron-Proximal	4.44277	9.83130	K562	FXR2
chr1	226595594	226595676	-	5'-UTR,CDS,intron-Distal	3.97702	5.71420	K562	RBM15
chr1	226595698	226595777	-	5'-UTR,intron-Distal,intron-Proximal	4.69709	16.50789	K562	FMR1
chr1	226595685	226595769	-	5'-UTR,intron-Distal,intron-Proximal	4.15775	21.79890	K562	DDX3X
chr1	226555932	226555962	-	CDS,intron-Distal	5.00685	7.56146	K562	FXR2
chr1	226574131	226574143	-	CDS,intron-Distal	4.47540	18.30835	K562	UCHL5
chr1	226579898	226579930	-	CDS,intron-Distal,intron-Proximal	3.42029	5.39816	K562	LIN28B
chr1	226564911	226565001	-	CDS,intron-Distal	3.95385	8.77191	HepG2	G3BP1
chr1	226555225	226555310	-	CDS,intron-Distal,intron-Proximal	4.99346	22.19926	K562	FMR1
chr1	226578249	226578326	-	CDS,intron-Distal,intron-Proximal	3.98355	3.18236	K562	FXR1
chr1	226576361	226576479	-	CDS,intron-Distal,intron-Proximal	3.93309	5.89850	HepG2	AQR
chr1	226578255	226578326	-	CDS,intron-Distal,intron-Proximal	3.72171	10.83654	K562	FMR1
chr1	226556002	226556022	-	CDS,intron-Distal	4.38546	4.32914	K562	YBX3
chr1	226578162	226578236	-	CDS,intron-Distal	3.21571	9.39235	K562	DDX24
chr1	226549696	226549710	-	CDS,intron-Distal	3.36029	6.78524	K562	YBX3
chr1	226570743	226570839	-	CDS,intron-Distal	3.58459	6.58996	HepG2	GRWD1
chr1	226562046	226562054	-	CDS,intron-Distal	3.00155	3.47139	K562	GRWD1
chr1	226573369	226573378	-	CDS,intron-Distal	4.89934	4.59551	K562	FXR2
chr1	226578169	226578248	-	CDS,intron-Distal	3.33131	12.17574	K562	FXR2
chr1	226564809	226564856	-	CDS,intron-Distal	3.09112	8.32709	K562	UCHL5
chr1	226578276	226578326	-	CDS,intron-Distal,intron-Proximal	3.94012	31.28807	K562	UCHL5
chr1	226573290	226573353	-	CDS,intron-Distal	3.43377	9.24847	K562	ZNF800
chr1	226589918	226589991	-	CDS,intron-Distal	3.62027	9.77890	K562	ZNF800
chr1	226589914	226589935	-	CDS,intron-Distal,intron-Proximal	3.20157	5.29609	K562	ZNF622
chr1	226564914	226564996	-	CDS,intron-Distal	4.34212	7.82199	HepG2	BCLAF1
chr1	226574026	226574102	-	CDS,intron-Distal,intron-Proximal	3.37621	21.70342	K562	PUM1
chr1	226578241	226578276	-	CDS,intron-Distal	3.53407	19.59397	K562	UCHL5
chr1	226555138	226555186	-	CDS,intron-Distal,intron-Proximal	4.79490	4.02817	HepG2	PRPF8
chr1	226568772	226568845	-	CDS,intron-Distal	3.17194	6.20531	K562	GRWD1
chr1	226566947	226566975	-	CDS,intron-Distal	3.42960	8.83000	K562	UCHL5
chr1	226564918	226564999	-	CDS,intron-Distal	4.11669	6.26935	K562	DDX24
chr1	226568791	226568848	-	CDS,intron-Distal	4.94883	8.07346	HepG2	G3BP1
chr1	226567652	226567678	-	CDS,intron-Distal	5.01134	7.72091	K562	FMR1
chr1	226564925	226564984	-	CDS,intron-Distal	3.75922	6.79537	K562	AQR
chr1	226564818	226564873	-	CDS,intron-Distal	4.02731	5.63763	K562	AQR
chr1	226555815	226555913	-	CDS,intron-Distal,intron-Proximal	4.74776	5.01842	HepG2	PRPF8
chr1	226595512	226595560	-	CDS,intron-Distal	3.11157	7.99225	K562	ZNF622
chr1	226595510	226595543	-	CDS,intron-Distal	3.29921	6.97927	K562	DDX3X
chr1	226573302	226573380	-	CDS,intron-Distal	4.35392	15.65722	K562	FMR1
chr1	226552711	226552777	-	CDS,intron-Distal,intron-Proximal	4.83822	12.60286	K562	FXR2
chr1	226552755	226552854	-	CDS,intron-Distal,intron-Proximal	3.25773	3.90603	K562	FXR1
chr1	226576356	226576381	-	CDS,intron-Distal,intron-Proximal	3.52069	4.31813	HepG2	G3BP1
chr1	226574026	226574030	-	CDS,intron-Distal,intron-Proximal	3.19241	12.50982	K562	YBX3
chr1	226573283	226573368	-	CDS,intron-Distal	3.20035	10.80145	K562	BUD13
chr1	226573205	226573245	-	CDS,intron-Distal	5.51714	8.07480	K562	FMR1
chr1	226567622	226567732	-	CDS,intron-Distal,intron-Proximal	5.78139	12.55797	HepG2	G3BP1
chr1	226567648	226567732	-	CDS,intron-Distal	3.94796	10.79545	K562	FXR2
chr1	226574097	226574144	-	CDS,intron-Distal,intron-Proximal	3.09534	17.06447	K562	ZNF800
chr1	226568781	226568832	-	CDS,intron-Distal	4.35203	11.00894	K562	FXR2
chr1	226570738	226570806	-	CDS,intron-Distal	3.23152	4.44431	HepG2	G3BP1
chr1	226589938	226589980	-	CDS,intron-Distal	4.26763	4.70436	K562	RBM15
chr1	226574104	226574131	-	CDS,intron-Distal	4.60401	20.36431	K562	UCHL5
chr1	226574047	226574070	-	CDS,intron-Distal	3.19114	13.02019	K562	UCHL5
chr1	226574025	226574100	-	CDS,intron-Distal,intron-Proximal	3.01077	12.71008	K562	GRWD1
chr1	226578126	226578253	-	CDS,intron-Distal	3.31714	7.39995	HepG2	BCLAF1
chr1	226567678	226567734	-	CDS,intron-Distal	6.25260	17.89853	K562	FMR1
chr1	226574026	226574047	-	CDS,intron-Distal,intron-Proximal	3.12621	11.16442	K562	UCHL5
chr1	226566879	226566947	-	CDS,intron-Distal	3.53605	16.83133	K562	UCHL5
chr1	226558144	226558195	-	CDS,intron-Distal	4.25086	3.88780	HepG2	G3BP1
chr1	226551704	226551740	-	CDS,intron-Distal	4.42792	3.68241	HepG2	G3BP1
chr1	226568855	226568884	-	CDS,intron-Distal	3.36675	6.67170	K562	ZNF622
chr1	226578016	226578112	-	CDS,intron-Distal,intron-Proximal	4.04007	11.08359	K562	AQR
chr1	226576356	226576401	-	CDS,intron-Distal,intron-Proximal	4.20420	27.38319	K562	UCHL5
chr1	226576402	226576451	-	CDS,intron-Distal	3.57812	8.10056	K562	FXR2
chr1	226589956	226590032	-	CDS,intron-Distal	4.03217	17.14389	K562	FXR2
chr1	226578150	226578241	-	CDS,intron-Distal	3.60136	28.90403	K562	UCHL5
chr1	226573246	226573295	-	CDS,intron-Distal	4.07621	11.94567	K562	FMR1
chr1	226568864	226568906	-	CDS,intron-Distal	4.15634	3.39686	HepG2	G3BP1
chr1	226564946	226564998	-	CDS,intron-Distal	3.79733	14.84992	K562	FMR1
chr1	226573242	226573298	-	CDS,intron-Distal	4.62577	20.37787	K562	FXR2
chr1	226573204	226573232	-	CDS,intron-Distal,intron-Proximal	3.78346	7.13578	K562	FXR2
chr1	226590066	226590081	-	CDS,intron-Distal,intron-Proximal	3.64830	5.36344	K562	FMR1
chr1	226574061	226574141	-	CDS,intron-Distal	3.13011	5.79926	HepG2	BCLAF1
chr1	226578174	226578239	-	CDS,intron-Distal	3.75725	9.65708	K562	FMR1
chr1	226570753	226570816	-	CDS,intron-Distal	3.11153	6.38139	K562	FMR1
chr1	226552704	226552759	-	CDS,intron-Distal,intron-Proximal	4.33006	12.10714	K562	FMR1
chr1	226549710	226549728	-	CDS,intron-Distal	3.03830	4.65372	K562	YBX3
chr1	226567333	226567343	-	CDS,intron-Distal,intron-Proximal	3.73440	3.11149	HepG2	G3BP1
chr1	226558156	226558192	-	CDS,intron-Distal	3.00463	5.10436	K562	FXR2
chr1	226567580	226567660	-	CDS,intron-Distal,intron-Proximal	5.91611	12.10660	K562	AQR
chr1	226558134	226558156	-	CDS,intron-Distal,intron-Proximal	3.95699	6.49839	K562	FMR1
chr1	226568768	226568831	-	CDS,intron-Distal,intron-Proximal	4.89189	6.13315	HepG2	BCLAF1
chr1	226578185	226578276	-	CDS,intron-Distal	3.32089	11.22685	K562	ZNF800
chr1	226576357	226576427	-	CDS,intron-Distal,intron-Proximal	4.73860	4.98895	HepG2	FXR2
chr1	226595513	226595551	-	CDS,intron-Distal	3.19921	6.96313	K562	FXR2
chr1	226578148	226578275	-	CDS,intron-Distal	4.72268	11.52853	HepG2	GRWD1
chr1	226568772	226568839	-	CDS,intron-Distal	3.25365	11.45886	K562	UCHL5
chr1	226570760	226570821	-	CDS,intron-Distal	3.53853	10.30572	K562	FXR2
chr1	226566846	226566927	-	CDS,intron-Distal	4.25806	7.38794	HepG2	G3BP1
chr1	226578248	226578325	-	CDS,intron-Distal	3.82754	14.75781	K562	FXR2
chr1	226551710	226551763	-	CDS,intron-Distal	3.72108	5.59577	K562	SND1
chr1	226576361	226576432	-	CDS,intron-Distal,intron-Proximal	3.37064	7.27679	K562	MTPAP
chr1	226576355	226576381	-	CDS,intron-Distal,intron-Proximal	3.18869	11.24782	K562	ZNF622
chr1	226567837	226567866	-	CDS,intron-Distal,intron-Proximal	3.26278	5.59104	K562	BUD13
chr1	226579899	226579937	-	CDS,intron-Distal,intron-Proximal	4.05891	24.10579	K562	UCHL5
chr1	226589916	226589987	-	CDS,intron-Distal	4.14126	5.31167	HepG2	GRWD1
chr1	226595509	226595554	-	CDS,intron-Distal	3.77696	9.61928	K562	FMR1
chr1	226574099	226574145	-	CDS,intron-Distal,intron-Proximal	3.65228	3.80299	HepG2	GRWD1
chr1	226566847	226566869	-	CDS,intron-Distal	3.45030	8.11704	K562	UCHL5
chr1	226568788	226568829	-	CDS,intron-Distal	3.25295	6.07803	K562	FMR1
chr1	226595554	226595602	-	CDS,intron-Distal	4.00702	8.73194	K562	FMR1
chr1	226562040	226562055	-	CDS,intron-Distal	3.38674	5.59104	K562	BUD13
chr1	226573373	226573381	-	CDS,intron-Distal	3.11925	11.97106	K562	YBX3
chr1	226578277	226578326	-	CDS,intron-Distal,intron-Proximal	3.42724	7.15714	K562	ZNF800
chr1	226558154	226558178	-	CDS,intron-Distal	5.18831	9.06345	K562	UCHL5
chr1	226555206	226555303	-	CDS,intron-Distal	4.52222	18.06888	K562	FXR2
chr1	226573353	226573382	-	CDS,intron-Distal,intron-Proximal	3.04900	12.71736	K562	PUM1
chr1	226595551	226595601	-	CDS,intron-Distal	3.63419	7.53312	K562	FXR2
chr1	226579899	226579929	-	CDS,intron-Distal,intron-Proximal	3.21375	6.36905	K562	FXR2
chr1	226578205	226578327	-	CDS,intron-Distal,intron-Proximal	3.27380	6.23402	HepG2	FXR2
chr1	226595564	226595603	-	CDS,intron-Distal	3.87521	10.82249	K562	UCHL5
chr1	226576385	226576444	-	CDS,intron-Distal,intron-Proximal	3.01366	9.63281	K562	ZNF800
chr1	226589943	226590043	-	CDS,intron-Distal	4.35377	16.84128	K562	FMR1
chr1	226558134	226558161	-	CDS,intron-Distal,intron-Proximal	4.83386	6.97425	K562	YBX3
chr1	226574087	226574145	-	CDS,intron-Distal,intron-Proximal	4.39735	3.29312	HepG2	FXR2
chr1	226564930	226564998	-	CDS,intron-Distal	4.29675	16.62115	K562	FXR2
chr1	226578121	226578150	-	CDS,intron-Distal	3.77832	7.10975	K562	UCHL5
chr1	226573298	226573338	-	CDS,intron-Distal	4.00463	8.38301	K562	FXR2
chr1	226574070	226574104	-	CDS,intron-Distal	3.82675	13.66720	K562	UCHL5
chr1	226552808	226552851	-	CDS,intron-Distal	3.31648	4.04629	HepG2	G3BP1
chr1	226574113	226574143	-	CDS,intron-Distal	3.52069	4.31813	HepG2	G3BP1
chr1	226576389	226576457	-	CDS,intron-Distal,intron-Proximal	3.04515	5.62228	HepG2	G3BP1
chr1	226576443	226576455	-	CDS,intron-Distal	4.43706	7.16955	K562	UCHL5
chr1	226555197	226555300	-	CDS,intron-Distal	3.82145	3.55391	K562	FXR1
chr1	226574050	226574098	-	CDS,intron-Distal	3.27877	4.21377	K562	METAP2
chr1	226567649	226567777	-	CDS,intron-Distal	4.14126	7.03378	HepG2	GRWD1
chr1	226568775	226568855	-	CDS,intron-Distal	3.91239	19.99452	K562	ZNF622
chr1	226576356	226576436	-	CDS,intron-Distal,intron-Proximal	4.17807	7.09561	HepG2	BCLAF1
chr1	226576356	226576453	-	CDS,intron-Distal,intron-Proximal	4.41624	3.75533	K562	TRA2A
chr1	226570581	226570712	-	intron-Distal,intron-Proximal	4.99304	6.08021	K562	PRPF8
chr1	226570640	226570697	-	intron-Distal,intron-Proximal	4.75472	5.11689	HepG2	RBM22
chr1	226561843	226561911	-	intron-Distal,intron-Proximal	4.98607	6.04760	K562	AQR
chr1	226555852	226555899	-	intron-Distal,intron-Proximal	3.60331	5.83621	K562	AQR
chr1	226568726	226568767	-	intron-Distal,intron-Proximal	5.08504	6.22530	K562	AQR
chr1	226551518	226551565	-	intron-Distal,intron-Proximal	3.08710	3.59391	K562	AQR
chr1	226587259	226587374	-	intron-Distal	3.68285	3.14791	K562	HNRNPL
chr1	226570613	226570736	-	intron-Distal,intron-Proximal	6.59031	15.31585	K562	AQR
chr1	226551589	226551643	-	intron-Distal,intron-Proximal	5.19963	5.65342	K562	AQR
chr1	226558060	226558134	-	intron-Distal,intron-Proximal	3.88889	7.30031	K562	AQR
chr1	226550753	226550800	-	intron-Distal,intron-Proximal	4.57707	8.01338	K562	AQR
chr1	226584150	226584261	-	intron-Distal	3.38509	4.09242	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for PARP1 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for PARP1 is not available on ENCORE database.
128 RBPs can affect the levels of PARP1.

The Knockdown/knockout RNA-Seq assay for PARP1 is not available on ENCORE database.

128 RBPs can affect the gene expression of PARP1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PARP1	ENSG00000143799.8	2336.23130	3246.76800	-0.47480	10.54480	9.51780	HepG2	ACO1
PARP1	ENSG00000143799.8	2208.27890	2765.40080	-0.32460	2.59100	1.62460	HepG2	ADAR
PARP1	ENSG00000143799.8	2503.89210	3262.33360	-0.38170	6.15580	5.05340	HepG2	AKAP8L
PARP1	ENSG00000143799.8	2259.30320	2768.80010	-0.29340	2.01510	1.34080	HepG2	ASCC1
PARP1	ENSG00000143799.8	3447.60420	4953.11230	-0.52270	14.28440	12.93800	HepG2	AUH
PARP1	ENSG00000143799.8	1701.18450	2836.85000	-0.73780	9.52140	7.98410	HepG2	BCLAF1
PARP1	ENSG00000143799.8	1252.93220	3279.63300	-1.38820	52.21440	49.73540	HepG2	CALR
PARP1	ENSG00000143799.8	2309.31070	3246.84670	-0.49160	5.74220	4.78470	HepG2	CPSF6
PARP1	ENSG00000143799.8	2626.95600	3396.77290	-0.37080	3.82230	2.52750	HepG2	CPSF7
PARP1	ENSG00000143799.8	3669.39270	4570.80820	-0.31690	4.98700	4.17010	HepG2	CELF1
PARP1	ENSG00000143799.8	3903.06160	4914.45300	-0.33240	8.34470	7.16390	HepG2	DAZAP1
PARP1	ENSG00000143799.8	2412.38000	2839.81650	-0.23530	2.51790	1.41750	HepG2	DDX1
PARP1	ENSG00000143799.8	2279.74590	3205.51250	-0.49170	4.76470	3.96130	HepG2	DDX3X
PARP1	ENSG00000143799.8	2104.75040	3210.15290	-0.60900	6.41820	5.29870	HepG2	DDX55
PARP1	ENSG00000143799.8	2494.05550	3687.05580	-0.56400	3.09710	2.06410	HepG2	DDX59
PARP1	ENSG00000143799.8	2595.64170	3302.45780	-0.34740	3.12220	2.05580	HepG2	DDX5
PARP1	ENSG00000143799.8	1133.30310	2753.65450	-1.28080	22.45200	20.91930	HepG2	DDX6
PARP1	ENSG00000143799.8	1868.67100	2685.74940	-0.52330	6.83290	5.34600	HepG2	DHX30
PARP1	ENSG00000143799.8	2377.15200	3106.37400	-0.38600	6.56490	5.60630	HepG2	DKC1
PARP1	ENSG00000143799.8	2180.34510	2784.58030	-0.35290	5.22320	4.28620	HepG2	DNAJC21
PARP1	ENSG00000143799.8	1981.98950	2760.09310	-0.47780	13.22690	11.90800	HepG2	DNAJC2
PARP1	ENSG00000143799.8	1517.90830	2647.10230	-0.80230	11.29320	10.14310	HepG2	EIF2S1
PARP1	ENSG00000143799.8	2170.08450	2629.86430	-0.27720	2.74230	1.66450	HepG2	EIF3G
PARP1	ENSG00000143799.8	2316.24500	2925.33380	-0.33680	2.19310	1.62060	HepG2	EIF4A3
PARP1	ENSG00000143799.8	4194.18510	4848.65760	-0.20920	2.77650	1.93810	HepG2	EIF4G1
PARP1	ENSG00000143799.8	3582.97680	4644.65920	-0.37440	3.67540	2.74480	HepG2	EIF4G2
PARP1	ENSG00000143799.8	4350.10630	5686.88630	-0.38660	8.97730	7.99810	HepG2	ETF1
PARP1	ENSG00000143799.8	2336.44480	4163.99610	-0.83370	10.72390	9.34850	HepG2	FIP1L1
PARP1	ENSG00000143799.8	3867.41630	2951.61620	0.38980	3.38440	2.62360	HepG2	FXR1
PARP1	ENSG00000143799.8	1853.53270	2738.01630	-0.56290	5.56420	4.63410	HepG2	G3BP1
PARP1	ENSG00000143799.8	1372.39030	2123.79450	-0.63000	7.52470	6.07250	HepG2	GEMIN5
PARP1	ENSG00000143799.8	1492.45950	3680.36490	-1.30220	26.78430	25.02990	HepG2	GPKOW
PARP1	ENSG00000143799.8	2548.13860	3099.96110	-0.28280	4.16400	2.98050	HepG2	HDGF
PARP1	ENSG00000143799.8	2042.18100	2811.25840	-0.46110	5.77450	4.88770	HepG2	HNRNPA1
PARP1	ENSG00000143799.8	3257.11190	4516.66200	-0.47170	11.15280	9.50910	HepG2	HNRNPA2B1
PARP1	ENSG00000143799.8	3052.20340	4323.28900	-0.50230	12.55140	11.17320	HepG2	HNRNPF
PARP1	ENSG00000143799.8	1660.38930	2772.58410	-0.73970	11.44540	10.11700	HepG2	HNRNPK
PARP1	ENSG00000143799.8	3303.25230	4476.60310	-0.43850	13.82480	12.42760	HepG2	HNRNPL
PARP1	ENSG00000143799.8	2288.72930	3512.25710	-0.61790	8.12410	7.10890	HepG2	HNRNPLL
PARP1	ENSG00000143799.8	3287.02270	2499.85830	0.39480	2.64480	1.44770	HepG2	HSPD1
PARP1	ENSG00000143799.8	3023.05770	4257.22400	-0.49390	7.91130	6.74550	HepG2	IGF2BP1
PARP1	ENSG00000143799.8	2230.60990	2783.11930	-0.31930	2.27400	1.65540	HepG2	IGF2BP2
PARP1	ENSG00000143799.8	2557.50840	3173.04060	-0.31110	6.71870	5.62630	HepG2	ILF2
PARP1	ENSG00000143799.8	2236.94000	2968.18600	-0.40810	7.70300	6.06400	HepG2	KIF1C
PARP1	ENSG00000143799.8	3330.08260	2497.76170	0.41480	2.65070	1.43610	HepG2	KRR1
PARP1	ENSG00000143799.8	3563.80990	5535.71500	-0.63530	6.19440	4.94240	HepG2	LARP4
PARP1	ENSG00000143799.8	2109.27350	2952.64700	-0.48530	4.57760	3.73960	HepG2	MAGOH
PARP1	ENSG00000143799.8	3722.60140	2969.16000	0.32620	2.20850	1.64180	HepG2	MATR3
PARP1	ENSG00000143799.8	2798.80090	3370.90580	-0.26830	2.13480	1.41960	HepG2	MSI2
PARP1	ENSG00000143799.8	2398.08490	3582.45850	-0.57910	4.10680	2.91630	HepG2	MTPAP
PARP1	ENSG00000143799.8	2046.22790	2830.36150	-0.46800	5.46980	3.77390	HepG2	NAA15
PARP1	ENSG00000143799.8	1955.60470	2505.69340	-0.35760	3.33270	1.78290	HepG2	NIP7
PARP1	ENSG00000143799.8	753.50450	1447.34110	-0.94170	6.29840	4.92120	HepG2	PABPC1
PARP1	ENSG00000143799.8	938.41960	2706.46130	-1.52810	35.21390	32.71110	HepG2	PABPC4
PARP1	ENSG00000143799.8	2692.68880	3074.72470	-0.19140	2.19660	1.43360	HepG2	PARN
PARP1	ENSG00000143799.8	2234.49200	3257.68350	-0.54390	3.67110	2.48330	HepG2	PCBP2
PARP1	ENSG00000143799.8	1964.23450	2770.62120	-0.49620	9.30220	7.99340	HepG2	PPIL4
PARP1	ENSG00000143799.8	1888.93420	2476.06840	-0.39050	3.31400	2.43770	HepG2	PRPF8
PARP1	ENSG00000143799.8	2562.02670	4651.95350	-0.86060	19.80500	18.40450	HepG2	PUF60
PARP1	ENSG00000143799.8	3677.56820	4938.34730	-0.42530	14.02620	12.90660	HepG2	PUM1
PARP1	ENSG00000143799.8	2253.47950	3307.09860	-0.55340	12.63710	11.48300	HepG2	PUS1
PARP1	ENSG00000143799.8	2229.98890	2975.25380	-0.41600	6.35170	5.46030	HepG2	QKI
PARP1	ENSG00000143799.8	1574.60410	3143.72590	-0.99750	8.51410	7.32020	HepG2	RAVER1
PARP1	ENSG00000143799.8	3222.13490	4449.05510	-0.46550	7.74940	6.41730	HepG2	RBM15
PARP1	ENSG00000143799.8	3282.83430	4753.17410	-0.53390	12.58530	11.64250	HepG2	RBM22
PARP1	ENSG00000143799.8	2244.30880	2700.24480	-0.26680	2.40210	1.76950	HepG2	RBM25
PARP1	ENSG00000143799.8	2652.21630	3341.64960	-0.33340	2.87520	1.86390	HepG2	RBM27
PARP1	ENSG00000143799.8	2194.97640	2713.56950	-0.30600	2.28770	1.32540	HepG2	RCC2
PARP1	ENSG00000143799.8	3565.42770	3057.35540	0.22170	2.87770	2.32830	HepG2	NELFE
PARP1	ENSG00000143799.8	3286.86570	2847.53100	0.20690	2.60930	2.00850	HepG2	RECQL
PARP1	ENSG00000143799.8	2496.04130	4656.96510	-0.89970	19.56590	18.08160	HepG2	RPLP0
PARP1	ENSG00000143799.8	1956.31500	3088.12310	-0.65860	4.94400	3.69980	HepG2	RPS10
PARP1	ENSG00000143799.8	1923.18880	2320.91370	-0.27120	2.28840	1.72410	HepG2	RPS19
PARP1	ENSG00000143799.8	1394.88130	2449.31420	-0.81220	10.54110	9.15520	HepG2	RRP9
PARP1	ENSG00000143799.8	2289.07650	4271.07110	-0.89980	10.17350	8.81580	HepG2	SF3A3
PARP1	ENSG00000143799.8	2477.77990	3476.33170	-0.48850	6.11430	5.10020	HepG2	SF3B1
PARP1	ENSG00000143799.8	3432.78490	4460.68970	-0.37790	10.04850	8.84200	HepG2	SLBP
PARP1	ENSG00000143799.8	2411.68260	3225.97850	-0.41970	12.00650	10.81290	HepG2	SMN1
PARP1	ENSG00000143799.8	2296.70160	3868.06770	-0.75200	6.36200	5.16510	HepG2	SNRNP70
PARP1	ENSG00000143799.8	2994.23500	5368.51660	-0.84230	42.41690	41.06560	HepG2	SRFBP1
PARP1	ENSG00000143799.8	5280.40670	2985.40050	0.82260	38.59660	37.27940	HepG2	SRSF1
PARP1	ENSG00000143799.8	2436.63560	3740.85490	-0.61850	5.87200	4.37140	HepG2	SRSF3
PARP1	ENSG00000143799.8	3669.06340	4593.23820	-0.32410	5.93290	5.06680	HepG2	SRSF5
PARP1	ENSG00000143799.8	2924.46190	4247.42480	-0.53840	14.46630	13.09450	HepG2	SRSF7
PARP1	ENSG00000143799.8	1720.84280	2428.79070	-0.49710	11.47180	10.48320	HepG2	SRSF9
PARP1	ENSG00000143799.8	3138.79990	4661.11090	-0.57050	18.44810	17.37430	HepG2	SSB
PARP1	ENSG00000143799.8	1943.96590	2937.89110	-0.59580	4.13900	2.65230	HepG2	SUB1
PARP1	ENSG00000143799.8	1477.86700	3195.56920	-1.11260	19.91060	18.38830	HepG2	SUPV3L1
PARP1	ENSG00000143799.8	3514.13560	2683.42130	0.38900	6.38230	5.59070	HepG2	TAF15
PARP1	ENSG00000143799.8	1779.82960	3423.86400	-0.94390	19.23700	17.64470	HepG2	TARDBP
PARP1	ENSG00000143799.8	1387.91090	2141.82410	-0.62590	6.93960	5.48610	HepG2	TFIP11
PARP1	ENSG00000143799.8	2275.53050	3045.40210	-0.42040	9.00030	8.07400	HepG2	TRIM56
PARP1	ENSG00000143799.8	3898.22620	4810.81990	-0.30350	2.07120	1.35280	HepG2	UBE2L3
PARP1	ENSG00000143799.8	1259.83600	1887.66060	-0.58340	6.33230	5.17660	HepG2	UCHL5
PARP1	ENSG00000143799.8	3177.25480	3787.78800	-0.25360	4.04540	3.22480	HepG2	UPF1
PARP1	ENSG00000143799.8	2007.75750	2925.92970	-0.54330	3.99280	2.77750	HepG2	UPF2
PARP1	ENSG00000143799.8	2237.43840	3145.69020	-0.49150	5.26820	4.27510	HepG2	XRN2
PARP1	ENSG00000143799.8	2594.18400	3128.10230	-0.27000	4.82110	3.97520	HepG2	ZC3H8
PARP1	ENSG00000143799.8	2139.30930	4165.84040	-0.96150	60.15180	58.47630	HepG2	ZNF622
PARP1	ENSG00000143799.8	7552.27200	9211.43220	-0.28650	2.95690	1.72970	K562	AARS
PARP1	ENSG00000143799.8	12832.25010	9485.55630	0.43590	11.64900	10.57870	K562	AGGF1
PARP1	ENSG00000143799.8	13469.16800	9870.14820	0.44840	6.26820	5.25680	K562	AKAP8L
PARP1	ENSG00000143799.8	6631.32830	14840.79100	-1.16220	34.84990	32.97190	K562	AQR
PARP1	ENSG00000143799.8	13935.46870	10356.15570	0.42820	9.16700	7.38150	K562	ATP5C1
PARP1	ENSG00000143799.8	8968.63120	10395.88450	-0.21310	3.78500	2.65300	K562	BCLAF1
PARP1	ENSG00000143799.8	6129.93750	8295.57980	-0.43650	4.94930	3.76840	K562	BOP1
PARP1	ENSG00000143799.8	7117.05430	8820.69100	-0.30960	3.74640	2.83430	K562	CPSF6
PARP1	ENSG00000143799.8	14778.10050	10621.00560	0.47640	12.24600	10.13170	K562	DKC1
PARP1	ENSG00000143799.8	6837.63810	9368.28350	-0.45430	5.34320	4.05070	K562	EFTUD2
PARP1	ENSG00000143799.8	7811.13580	8990.71770	-0.20290	2.84100	1.61430	K562	EIF2S1
PARP1	ENSG00000143799.8	10626.90630	13704.81620	-0.36700	7.60280	6.49830	K562	EIF2S2
PARP1	ENSG00000143799.8	4987.45890	8551.53190	-0.77790	16.17170	14.05790	K562	EIF4A3
PARP1	ENSG00000143799.8	6124.26200	7454.25080	-0.28350	2.96520	1.31470	K562	FASTKD2
PARP1	ENSG00000143799.8	6540.32870	12123.66120	-0.89040	20.58980	18.06440	K562	FIP1L1
PARP1	ENSG00000143799.8	6613.44920	8750.17320	-0.40390	3.79860	2.44900	K562	FKBP4
PARP1	ENSG00000143799.8	7079.19180	8974.63170	-0.34230	3.48230	2.51980	K562	FMR1
PARP1	ENSG00000143799.8	5418.05570	7606.71780	-0.48950	5.46190	4.12890	K562	FTO
PARP1	ENSG00000143799.8	9978.66570	8893.22940	0.16600	1.97960	1.45110	K562	FXR1
PARP1	ENSG00000143799.8	5599.38520	7531.81230	-0.42770	3.04710	2.29900	K562	G3BP2
PARP1	ENSG00000143799.8	6165.63460	9392.32530	-0.60720	7.96550	5.56940	K562	GEMIN5
PARP1	ENSG00000143799.8	10803.23590	12468.87570	-0.20690	2.50490	1.42430	K562	GLRX3
PARP1	ENSG00000143799.8	4657.13930	8421.67680	-0.85470	20.28960	18.02090	K562	GPKOW
PARP1	ENSG00000143799.8	12326.76630	18263.48600	-0.56720	11.22880	9.68080	K562	GRSF1
PARP1	ENSG00000143799.8	6512.03930	10079.69560	-0.63030	13.21520	11.99110	K562	HNRNPC
PARP1	ENSG00000143799.8	7437.54360	9000.94360	-0.27530	2.71610	1.58540	K562	HNRNPF
PARP1	ENSG00000143799.8	12427.10330	16437.09330	-0.40350	4.82950	3.78730	K562	HSPD1
PARP1	ENSG00000143799.8	13619.70660	10474.70480	0.37870	3.69380	2.72170	K562	KIF1C
PARP1	ENSG00000143799.8	4980.98930	7190.83200	-0.52970	4.51010	3.28440	K562	KRR1
PARP1	ENSG00000143799.8	7299.93610	9762.41140	-0.41940	5.67400	4.45930	K562	MAGOH
PARP1	ENSG00000143799.8	6770.82610	8220.45930	-0.27990	2.89340	1.99670	K562	METAP2
PARP1	ENSG00000143799.8	15925.28920	22124.64300	-0.47430	6.49060	4.77620	K562	MSI2
PARP1	ENSG00000143799.8	11320.53340	13109.41650	-0.21170	3.87630	2.93380	K562	MTPAP
PARP1	ENSG00000143799.8	11807.54960	8224.90320	0.52150	2.34410	1.54810	K562	NAA15
PARP1	ENSG00000143799.8	7287.05760	9230.67220	-0.34110	2.89410	1.56310	K562	NONO
PARP1	ENSG00000143799.8	4326.61640	7959.52180	-0.87940	13.76260	9.88580	K562	PABPC4
PARP1	ENSG00000143799.8	8343.77450	11420.92130	-0.45290	4.72170	3.63760	K562	PCBP3
PARP1	ENSG00000143799.8	7992.76770	9840.73000	-0.30010	2.77270	1.34890	K562	PHF6
PARP1	ENSG00000143799.8	6956.84590	8760.26760	-0.33250	4.46080	3.44150	K562	POLR2G
PARP1	ENSG00000143799.8	10821.57510	13762.77140	-0.34690	3.47500	2.53890	K562	PPIG
PARP1	ENSG00000143799.8	6938.18300	9116.41700	-0.39390	4.23130	3.30470	K562	PRPF8
PARP1	ENSG00000143799.8	6865.80200	9037.43700	-0.39650	4.81680	3.57840	K562	PSIP1
PARP1	ENSG00000143799.8	8224.19720	9484.97710	-0.20580	1.88940	1.32180	K562	PTBP1
PARP1	ENSG00000143799.8	15231.68650	9788.50140	0.63780	10.88380	9.85540	K562	PUS1
PARP1	ENSG00000143799.8	4936.15340	7185.92620	-0.54180	3.42240	1.81430	K562	RAVER1
PARP1	ENSG00000143799.8	14161.05380	9537.40120	0.57020	15.40050	13.98430	K562	RBM15
PARP1	ENSG00000143799.8	7660.97280	9093.62250	-0.24730	2.06540	1.34410	K562	RBM22
PARP1	ENSG00000143799.8	6439.51910	8245.17210	-0.35660	4.96970	3.63940	K562	RCC2
PARP1	ENSG00000143799.8	6139.27070	9286.13770	-0.59700	6.71210	5.42890	K562	RPS19
PARP1	ENSG00000143799.8	7754.87340	14372.72250	-0.89020	40.56590	37.94430	K562	SF3A3
PARP1	ENSG00000143799.8	6347.69300	8008.99440	-0.33540	2.62750	1.68070	K562	SF3B1
PARP1	ENSG00000143799.8	6183.62060	7816.23570	-0.33800	3.61430	2.39530	K562	SRFBP1
PARP1	ENSG00000143799.8	12911.26020	14725.17930	-0.18970	4.01460	2.90800	K562	SRPK2
PARP1	ENSG00000143799.8	10915.39520	9298.71480	0.23120	2.34980	1.69080	K562	SRSF1
PARP1	ENSG00000143799.8	5667.15100	7108.71290	-0.32700	3.97300	2.67760	K562	SRSF4
PARP1	ENSG00000143799.8	5439.50190	8826.73510	-0.69840	9.45680	7.51780	K562	SUPV3L1
PARP1	ENSG00000143799.8	10896.94640	8786.73320	0.31040	4.20840	3.19010	K562	SYNCRIP
PARP1	ENSG00000143799.8	7856.83230	9410.31360	-0.26030	2.04790	1.43300	K562	TARDBP
PARP1	ENSG00000143799.8	15790.46240	17668.30670	-0.16210	2.58370	1.36160	K562	TROVE2
PARP1	ENSG00000143799.8	6381.93070	7538.91240	-0.24040	2.65440	1.86670	K562	U2AF2
PARP1	ENSG00000143799.8	6810.16180	9341.97560	-0.45600	5.13170	3.70210	K562	UCHL5
PARP1	ENSG00000143799.8	13415.94410	15444.25350	-0.20310	3.65440	2.83730	K562	UPF1
PARP1	ENSG00000143799.8	10699.58400	13215.14570	-0.30460	3.63030	2.62850	K562	WDR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
PARP1	Product_ID: 436400 Lot_ID: TE268344 Source: Thermo Fisher Target Name: PARP1-human
PARP1	Product_ID: 5625S Lot_ID: 1 Source: Cell Signaling Target Name: PARP1-human
PARP1	Product_ID: 9532S Lot_ID: 10 Source: Cell Signaling Technology Target Name: PARP1-human

PARP1

General Information

Functions

Localization

Domains (AlphaFold: PARP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PARP1 is not avaliable on ENCORE database.

35 proteins are bound to PARP1 RNA:

eCLIP assay for PARP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PARP1 is not available on ENCORE database.

128 RBPs can affect the gene expression of PARP1 :

The Knockdown/knockout RNA-Seq assay for PARP1 is not available on ENCORE database.

No RBPs affect the alternative splcing events of PARP1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for PARP1 is not avaliable on ENCORE database.