TSPAN13

General Information

Gene Name       : TSPAN13
Gene ID             : ENSG00000106537.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSPAN13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSPAN13ENSG00000106537.70.000.000.00ENCSR000AEF
HepG2TSPAN13ENSG00000106537.73.085.644.36ENCSR985KAT
K562TSPAN13ENSG00000106537.718.0619.6818.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSPAN13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSPAN13 RNA is bound by 8 proteins.  







eCLIP assay for TSPAN13 is not avaliable on ENCORE database.





8 proteins are bound to TSPAN13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr71682331016823380+3'-UTR4.648773.39858K562IGF2BP2
chr71682371916823775+3'-UTR4.168675.47880HepG2SUB1
chr71682338916823466+3'-UTR4.786288.00655K562YBX3
chr71679354416793613+5'-UTR,CDS3.278897.55931K562DDX3X
chr71679347916793627+5'-UTR,CDS5.190237.46114HepG2DDX3X
chr71679340316793454+5'-UTR4.107703.47325K562DDX3X
chr71679345416793543+5'-UTR4.8526711.35836K562DDX3X
chr71682302616823106+CDS,intron-Proximal3.864348.19085K562U2AF2
chr71682302816823090+CDS,intron-Proximal3.545245.04216K562U2AF1
chr71681670116816751+CDS,intron-Proximal3.266595.41344K562TIA1
chr71681653816816622+intron-Distal,intron-Proximal4.512065.41654K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSPAN13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSPAN13 is not available on ENCORE database.

  • 110 RBPs can affect the levels of TSPAN13.  








The Knockdown/knockout RNA-Seq assay for TSPAN13 is not available on ENCORE database.





110 RBPs can affect the gene expression of TSPAN13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSPAN13ENSG00000106537.7517.93730229.858501.1719010.042209.09540HepG2AKAP1
TSPAN13ENSG00000106537.7196.2229094.478001.054303.546401.66230HepG2APOBEC3C
TSPAN13ENSG00000106537.7853.14540450.000200.9228017.6028016.14710HepG2AUH
TSPAN13ENSG00000106537.7596.53800201.103701.5686020.2690018.19210HepG2BCLAF1
TSPAN13ENSG00000106537.7283.62940121.595901.2218010.420509.06880HepG2CALR
TSPAN13ENSG00000106537.7337.80820261.782700.367702.133401.53820HepG2CKAP4
TSPAN13ENSG00000106537.7239.59230101.177601.243606.460105.28920HepG2CNOT7
TSPAN13ENSG00000106537.7456.76300265.167300.784408.186907.19220HepG2CELF1
TSPAN13ENSG00000106537.7195.63130123.608700.662302.714402.04180HepG2DDX21
TSPAN13ENSG00000106537.71248.69520220.178602.5036061.1064058.50920HepG2DDX3X
TSPAN13ENSG00000106537.7375.99450227.489000.724804.534603.57040HepG2DDX55
TSPAN13ENSG00000106537.7360.05620230.880300.641002.513001.58240HepG2DDX59
TSPAN13ENSG00000106537.7285.91240189.157900.595902.575301.97890HepG2DDX6
TSPAN13ENSG00000106537.7225.30390134.399000.745204.908304.07920HepG2DNAJC2
TSPAN13ENSG00000106537.7226.7831084.716101.420507.756306.29430HepG2EEF2
TSPAN13ENSG00000106537.7150.0646070.643101.086904.859403.39220HepG2EFTUD2
TSPAN13ENSG00000106537.7822.85230181.822302.1780038.6329036.59640HepG2EIF2S1
TSPAN13ENSG00000106537.7640.36380195.647301.7105018.8859017.20230HepG2EIF4B
TSPAN13ENSG00000106537.7341.26300516.62550-0.598205.123504.35120HepG2ETF1
TSPAN13ENSG00000106537.7108.4953061.451100.820002.856301.66810HepG2FAM120A
TSPAN13ENSG00000106537.730.5874085.66090-1.485705.104504.04830HepG2FUBP3
TSPAN13ENSG00000106537.7240.83400155.908500.627202.484701.42480HepG2FUS
TSPAN13ENSG00000106537.7128.84750230.51140-0.839202.796002.15190HepG2GPKOW
TSPAN13ENSG00000106537.7236.00470136.916200.785403.907103.15860HepG2HNRNPA1
TSPAN13ENSG00000106537.7472.35130262.037700.850009.386807.85850HepG2HNRNPA2B1
TSPAN13ENSG00000106537.758.53930219.97830-1.909907.614506.62910HepG2HNRNPLL
TSPAN13ENSG00000106537.7253.03020156.441600.693603.851302.74830HepG2HNRNPM
TSPAN13ENSG00000106537.7231.86110151.280800.615902.602202.01520HepG2HNRNPU
TSPAN13ENSG00000106537.7364.64590140.935001.371404.444902.85420HepG2KRR1
TSPAN13ENSG00000106537.7308.53200199.037000.632302.816701.98020HepG2LARP4
TSPAN13ENSG00000106537.7237.5824071.995301.722405.081203.68240HepG2METAP2
TSPAN13ENSG00000106537.7672.53110183.518401.8736034.2161031.92700HepG2MSI2
TSPAN13ENSG00000106537.7512.00510208.756101.2942013.3363012.00780HepG2NCBP2
TSPAN13ENSG00000106537.7222.84380133.659600.737403.082901.57390HepG2NKRF
TSPAN13ENSG00000106537.7174.75320282.73350-0.694104.534103.55980HepG2NOL12
TSPAN13ENSG00000106537.757.63760208.79080-1.857009.489007.43250HepG2NONO
TSPAN13ENSG00000106537.7163.3392092.458700.820902.732301.85080HepG2PABPC1
TSPAN13ENSG00000106537.7308.75610149.750601.043809.691008.26500HepG2PARN
TSPAN13ENSG00000106537.7282.97810157.389500.846306.413105.54850HepG2PCBP1
TSPAN13ENSG00000106537.765.05340134.93150-1.052505.043404.07630HepG2PPIL4
TSPAN13ENSG00000106537.7285.56860175.600400.701404.019303.06790HepG2PRPF8
TSPAN13ENSG00000106537.7496.85550160.140901.6334018.0635016.89630HepG2PTBP1
TSPAN13ENSG00000106537.7359.20870269.891100.412302.019101.49840HepG2PUF60
TSPAN13ENSG00000106537.7163.13740286.49820-0.812406.606805.77250HepG2PUM1
TSPAN13ENSG00000106537.7537.93540286.290900.9099010.212108.96650HepG2PUM2
TSPAN13ENSG00000106537.7452.12010266.677600.761508.386207.41290HepG2PUS1
TSPAN13ENSG00000106537.7244.04070173.455300.492502.072201.52020HepG2QKI
TSPAN13ENSG00000106537.7186.98020266.73910-0.512502.922002.04190HepG2RBM15
TSPAN13ENSG00000106537.7882.17410431.810601.0306012.9136011.95930HepG2RBM22
TSPAN13ENSG00000106537.789.30690182.68710-1.032504.147002.84380HepG2RCC2
TSPAN13ENSG00000106537.7247.17520178.228700.471701.988901.51390HepG2NELFE
TSPAN13ENSG00000106537.7188.79210280.27830-0.570103.136802.41590HepG2RPLP0
TSPAN13ENSG00000106537.7106.0937066.917100.664801.895201.37800HepG2RPS19
TSPAN13ENSG00000106537.7256.29050173.716100.560902.601401.83710HepG2RRP9
TSPAN13ENSG00000106537.738.4099095.62240-1.315904.535702.86690HepG2SART3
TSPAN13ENSG00000106537.7109.8890067.179500.709902.184501.34470HepG2SERBP1
TSPAN13ENSG00000106537.741.11020269.34260-2.7119011.750308.76720HepG2SF1
TSPAN13ENSG00000106537.7198.27860285.63200-0.526601.909901.34710HepG2SF3A3
TSPAN13ENSG00000106537.7343.75550166.743101.043709.574208.57360HepG2SF3B4
TSPAN13ENSG00000106537.7188.83000258.77710-0.454602.349701.69510HepG2SLBP
TSPAN13ENSG00000106537.7217.61520157.120300.469802.195101.61150HepG2SMN1
TSPAN13ENSG00000106537.7960.12890487.727100.9771021.1594020.11330HepG2SRFBP1
TSPAN13ENSG00000106537.7567.66160174.037301.7055030.9822029.77600HepG2SRSF1
TSPAN13ENSG00000106537.7247.69410141.583000.806803.387102.78920HepG2SRSF9
TSPAN13ENSG00000106537.7662.77900423.485100.646107.923007.14150HepG2SSB
TSPAN13ENSG00000106537.7237.74820153.114700.634703.450502.41000HepG2SUPT6H
TSPAN13ENSG00000106537.7418.43140214.323600.965108.396107.22590HepG2TARDBP
TSPAN13ENSG00000106537.7326.42020138.023001.241706.004204.49410HepG2TBRG4
TSPAN13ENSG00000106537.7268.29960148.309900.855106.550905.74830HepG2TRIM56
TSPAN13ENSG00000106537.7361.01250193.955000.896206.078905.16480HepG2U2AF1
TSPAN13ENSG00000106537.768.48750133.81900-0.966403.512002.66080HepG2UCHL5
TSPAN13ENSG00000106537.7358.66420253.312800.501603.569902.79300HepG2UPF1
TSPAN13ENSG00000106537.7155.77160244.56220-0.650803.536802.87560HepG2UTP3
TSPAN13ENSG00000106537.7130.10330222.95760-0.777102.607301.90320HepG2XRN2
TSPAN13ENSG00000106537.7519.17660278.594300.8980013.0522012.08640HepG2ZNF622
TSPAN13ENSG00000106537.7478.14340820.68180-0.779406.518104.64500K562ABCF1
TSPAN13ENSG00000106537.72326.465901355.193500.7795013.2766011.68810K562AKAP8L
TSPAN13ENSG00000106537.7836.715901841.04500-1.1377023.0096021.49990K562AQR
TSPAN13ENSG00000106537.7656.26480880.60190-0.424204.393902.97960K562CPEB4
TSPAN13ENSG00000106537.7360.26630512.70220-0.509103.622302.72570K562CPSF6
TSPAN13ENSG00000106537.7473.71840638.24390-0.430103.038501.92780K562CSTF2
TSPAN13ENSG00000106537.71118.64440911.145600.295903.058502.37740K562DDX47
TSPAN13ENSG00000106537.71741.697001458.353800.256102.477601.65500K562DKC1
TSPAN13ENSG00000106537.7705.32760953.92330-0.435603.678402.73590K562EIF4A3
TSPAN13ENSG00000106537.7587.73760859.04800-0.547604.221102.73940K562EIF4B
TSPAN13ENSG00000106537.71165.478901507.42880-0.371204.279803.11910K562EIF4G2
TSPAN13ENSG00000106537.7578.49190832.67010-0.525403.987602.39240K562EWSR1
TSPAN13ENSG00000106537.7395.00530521.65950-0.401202.125501.37200K562FMR1
TSPAN13ENSG00000106537.7974.12030728.422300.419203.597102.04050K562FUS
TSPAN13ENSG00000106537.7700.49410992.03800-0.502006.219105.36590K562FXR1
TSPAN13ENSG00000106537.7406.48640721.57110-0.827907.798305.42420K562GEMIN5
TSPAN13ENSG00000106537.7487.33250668.58700-0.456204.091202.71270K562GLRX3
TSPAN13ENSG00000106537.7813.660301149.86990-0.499005.605704.10030K562HNRNPA1
TSPAN13ENSG00000106537.7513.05660745.71340-0.539504.729903.96980K562HNRNPC
TSPAN13ENSG00000106537.7385.89470665.98410-0.787308.398206.32520K562HNRNPF
TSPAN13ENSG00000106537.7640.52870823.44440-0.362402.345201.38040K562HNRNPL
TSPAN13ENSG00000106537.7954.26680485.151400.975906.013404.57600K562HNRNPM
TSPAN13ENSG00000106537.71301.77070799.791900.702708.251206.89080K562HSPD1
TSPAN13ENSG00000106537.71866.079901438.237300.375603.719202.74310K562KIF1C
TSPAN13ENSG00000106537.7953.08810722.309400.399903.013601.55530K562LARP7
TSPAN13ENSG00000106537.7460.79010756.45300-0.715106.450104.05790K562LIN28B
TSPAN13ENSG00000106537.71935.985801376.716000.491704.096002.70920K562MAK16
TSPAN13ENSG00000106537.7992.799901611.18370-0.698509.355907.48730K562MBNL1
TSPAN13ENSG00000106537.72041.028001606.757900.345003.074801.88060K562MSI2
TSPAN13ENSG00000106537.7548.89860702.93470-0.356903.074702.22510K562MTPAP
TSPAN13ENSG00000106537.71900.177001129.319700.750607.066905.41220K562NAA15
TSPAN13ENSG00000106537.7429.20370708.96160-0.724006.262104.16070K562NONO
TSPAN13ENSG00000106537.7656.64700781.00850-0.250202.095901.43640K562NSUN2
TSPAN13ENSG00000106537.7534.75130734.32010-0.457502.795001.36970K562NUSAP1
TSPAN13ENSG00000106537.71165.095001548.93320-0.410804.818802.99540K562PNPT1
TSPAN13ENSG00000106537.7925.37770700.380300.401802.852502.09280K562PRPF8
TSPAN13ENSG00000106537.7405.99080668.62720-0.719807.197005.61710K562PSIP1
TSPAN13ENSG00000106537.71854.043301416.691000.388003.414102.68500K562PTBP1
TSPAN13ENSG00000106537.71221.142101749.47090-0.518707.530805.69800K562PUM1
TSPAN13ENSG00000106537.71260.420501714.06950-0.443506.298404.82970K562PUM2
TSPAN13ENSG00000106537.73302.982801344.058301.2971032.0394030.17050K562PUS1
TSPAN13ENSG00000106537.71962.704601309.517500.5837010.199909.08660K562RBM15
TSPAN13ENSG00000106537.7330.19440610.11760-0.8858010.256808.34180K562RCC2
TSPAN13ENSG00000106537.71032.787501429.92920-0.469402.325901.34260K562NELFE
TSPAN13ENSG00000106537.7638.19710811.45560-0.346503.607801.80600K562RPS10
TSPAN13ENSG00000106537.7485.92060759.95050-0.645204.895502.51080K562SAFB2
TSPAN13ENSG00000106537.7488.26020872.27200-0.837103.383802.01550K562SF1
TSPAN13ENSG00000106537.7437.37060770.67850-0.8173012.1988010.58980K562SF3A3
TSPAN13ENSG00000106537.7348.10660578.36670-0.732506.455304.70650K562SRFBP1
TSPAN13ENSG00000106537.7366.98910527.62780-0.523803.585002.36410K562SRSF4
TSPAN13ENSG00000106537.7499.27970678.23050-0.441902.490501.53060K562SUPV3L1
TSPAN13ENSG00000106537.7941.070901405.69820-0.578903.314202.53830K562TARDBP
TSPAN13ENSG00000106537.7377.24460683.29940-0.857009.324107.35640K562TRIM56
TSPAN13ENSG00000106537.7471.73470730.80090-0.631505.224603.36980K562XRN2
TSPAN13ENSG00000106537.71407.755502073.99450-0.559007.241505.73050K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSPAN13 is not available on ENCORE database.





2 RBPs can affect the splicing of TSPAN13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSPAN13ENSG00000106537.7chr7+168174221681753616816666168167471681862716818701-0.062000.000270.00760excludedK562U2AF1
A3SSTSPAN13ENSG00000106537.7chr7+168166661681674716816702168167471681583516816003-0.058000.009790.05196shorterK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSPAN13 is not avaliable on ENCORE database.