CHIC2

General Information

Gene Name       : CHIC2
Gene ID             : ENSG00000109220.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHIC2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHIC2ENSG00000109220.106.165.545.85ENCSR000AEF
HepG2CHIC2ENSG00000109220.105.846.436.13ENCSR985KAT
K562CHIC2ENSG00000109220.106.607.186.89ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHIC2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHIC2 RNA is bound by 8 proteins.  







eCLIP assay for CHIC2 is not avaliable on ENCORE database.





8 proteins are bound to CHIC2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr45487600254876051-3'-UTR,intron-Distal,intron-Proximal5.492989.39648K562PABPC4
chr45493069854930772-5'-UTR,intron-Distal3.313174.63906HepG2NCBP2
chr45493072654930772-5'-UTR,intron-Distal3.632153.95805K562DDX3X
chr45493068454930726-5'-UTR,intron-Distal4.769116.71767K562DDX3X
chr45493069354930771-5'-UTR,intron-Distal5.424798.17272HepG2DDX3X
chr45491515254915253-CDS,intron-Distal,intron-Proximal3.647895.80880HepG2GRWD1
chr45491523054915278-CDS,intron-Distal,intron-Proximal4.242596.22576HepG2BCLAF1
chr45491586454915953-intron-Distal4.758554.07628HepG2PTBP1
chr45490548254905740-intron-Distal4.5640510.93437K562KHSRP
chr45489663054896691-intron-Distal3.939235.11500HepG2ILF3
chr45490532654905426-intron-Distal4.212744.72162K562KHSRP
chr45491558554915720-intron-Distal3.927823.66668K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHIC2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHIC2 is not available on ENCORE database.

  • 46 RBPs can affect the levels of CHIC2.  








The Knockdown/knockout RNA-Seq assay for CHIC2 is not available on ENCORE database.





46 RBPs can affect the gene expression of CHIC2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHIC2ENSG00000109220.6245.89930140.978100.802505.596604.79190HepG2ACO1
CHIC2ENSG00000109220.673.51450154.29820-1.069603.307401.47880HepG2APOBEC3C
CHIC2ENSG00000109220.6258.93310144.854500.837905.930604.98740HepG2AUH
CHIC2ENSG00000109220.6261.70740100.152601.3857010.893509.80790HepG2BOP1
CHIC2ENSG00000109220.6259.14740160.056800.695104.200603.43950HepG2CELF1
CHIC2ENSG00000109220.6412.37620219.663000.908606.718705.78500HepG2DDX3X
CHIC2ENSG00000109220.6146.3453086.562300.757502.605301.85230HepG2DDX55
CHIC2ENSG00000109220.6341.92500188.661000.857805.088704.27380HepG2DDX6
CHIC2ENSG00000109220.6150.8181095.551900.658402.116201.31750HepG2EIF3D
CHIC2ENSG00000109220.6312.76260195.166800.680302.957902.24750HepG2EIF4B
CHIC2ENSG00000109220.6268.70620162.653400.724103.833402.88550HepG2EIF4G2
CHIC2ENSG00000109220.6335.36380166.316501.011709.754808.73730HepG2ETF1
CHIC2ENSG00000109220.6134.09670199.15200-0.570602.114201.34210HepG2G3BP2
CHIC2ENSG00000109220.675.21060152.95120-1.024104.057402.71130HepG2GRSF1
CHIC2ENSG00000109220.683.99990131.92250-0.651202.532701.95240HepG2HNRNPU
CHIC2ENSG00000109220.6373.21870151.025801.305108.564506.96020HepG2PABPC1
CHIC2ENSG00000109220.690.05800185.48010-1.042305.175604.20060HepG2PABPC4
CHIC2ENSG00000109220.6391.30830123.077801.6686012.0214010.62940HepG2RAVER1
CHIC2ENSG00000109220.6312.53580204.569400.611302.571201.74230HepG2RBM15
CHIC2ENSG00000109220.6265.85170139.009000.935304.551203.92970HepG2RBM22
CHIC2ENSG00000109220.6134.05260232.94560-0.797204.596103.93130HepG2NELFE
CHIC2ENSG00000109220.6141.03540216.94470-0.621303.065302.42090HepG2RECQL
CHIC2ENSG00000109220.6305.90440118.632301.3665012.1814010.92770HepG2RPLP0
CHIC2ENSG00000109220.6120.4509066.101000.865602.821302.02780HepG2RRP9
CHIC2ENSG00000109220.674.18110175.82740-1.245002.991001.57310HepG2SF1
CHIC2ENSG00000109220.6154.1904098.449000.647202.120201.49660HepG2SF3B1
CHIC2ENSG00000109220.6226.67860125.468700.853204.218703.01690HepG2SMNDC1
CHIC2ENSG00000109220.6209.54090109.542100.935603.695902.78830HepG2SNRNP70
CHIC2ENSG00000109220.6335.55380157.004001.0956010.8290010.01470HepG2SRFBP1
CHIC2ENSG00000109220.6131.59670227.46630-0.789504.446703.88210HepG2SRSF1
CHIC2ENSG00000109220.6186.95490108.197500.788904.289503.45120HepG2SRSF7
CHIC2ENSG00000109220.6276.05760115.018001.263006.985305.12330HepG2SUB1
CHIC2ENSG00000109220.6188.5418086.183701.129305.222304.33930HepG2SUPV3L1
CHIC2ENSG00000109220.6108.43300204.43880-0.914905.337904.60130HepG2TAF15
CHIC2ENSG00000109220.6103.3316057.773400.838702.488501.53690HepG2TFIP11
CHIC2ENSG00000109220.6248.90020160.487000.633002.761102.13270HepG2U2AF1
CHIC2ENSG00000109220.6270.72670168.451000.684402.634801.81680HepG2UBE2L3
CHIC2ENSG00000109220.6127.67030187.42580-0.553902.355301.37750HepG2UTP18
CHIC2ENSG00000109220.6151.1354093.728600.689202.855702.17570HepG2ZC3H8
CHIC2ENSG00000109220.6285.57520200.541900.509903.180902.60750HepG2ZNF622
CHIC2ENSG00000109220.6263.43860182.640500.528402.921402.34000K562AGGF1
CHIC2ENSG00000109220.6264.61240190.050400.477402.303401.70620K562AKAP8L
CHIC2ENSG00000109220.6290.60890192.040400.597602.667702.08910K562AQR
CHIC2ENSG00000109220.6131.0740074.517800.814602.699101.95870K562PRPF8
CHIC2ENSG00000109220.6330.13280233.812900.497602.174201.45250K562PUF60
CHIC2ENSG00000109220.6130.9759075.926900.786502.622601.82990K562RPS19
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHIC2 is not available on ENCORE database.





1 RBPs can affect the splicing of CHIC2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCHIC2ENSG00000109220.6chr4-5488000354880139548800035488006354880229548803560.076000.000030.00033longerK562AQR
A3SSCHIC2ENSG00000109220.6chr4-5488022954880387548802295488028654915121549152770.113000.000000.00000longerK562AQR
A5SSCHIC2ENSG00000109220.6chr4-549151215491527754915205549152775488022954880286-0.140000.002590.04209shorterK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHIC2 is not avaliable on ENCORE database.