ROMO1

General Information

Gene Name       : ROMO1
Gene ID             : ENSG00000125995.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: ROMO1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ROMO1ENSG00000125995.152.3515.799.07ENCSR000AEF
HepG2ROMO1ENSG00000125995.15526.9377.56302.25ENCSR985KAT
K562ROMO1ENSG00000125995.1584.4621.3652.91ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ROMO1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ROMO1 RNA is bound by 11 proteins.  







eCLIP assay for ROMO1 is not avaliable on ENCORE database.





11 proteins are bound to ROMO1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr203428872034288750+3'-UTR,CDS3.819034.88797K562APOBEC3C
chr203428884234288872+3'-UTR3.6912914.09034K562YBX3
chr203428871934288754+3'-UTR,CDS,intron-Proximal4.5006238.42474K562PABPC4
chr203428881034288842+3'-UTR,CDS3.6159814.27872K562YBX3
chr203428876634288791+3'-UTR,CDS5.8693058.55541HepG2LARP4
chr203428871934288745+3'-UTR,CDS,intron-Proximal4.4946923.19628HepG2RPS3
chr203428871934288747+3'-UTR,CDS,intron-Proximal4.3064228.14424HepG2DDX3X
chr203428881134288840+3'-UTR,CDS5.3332660.00477HepG2LARP4
chr203428875034288798+3'-UTR,CDS3.010694.41002K562APOBEC3C
chr203428879834288824+3'-UTR,CDS5.030466.24350K562PABPC4
chr203428871934288766+3'-UTR,CDS,intron-Proximal5.5166579.80184HepG2LARP4
chr203428875434288794+3'-UTR,CDS5.0331625.08699K562PABPC4
chr203428872434288780+3'-UTR,CDS4.9037610.92204K562RPS3
chr203428884034288872+3'-UTR5.5730442.82091HepG2LARP4
chr203428871834288761+3'-UTR,CDS,intron-Proximal3.9481423.70454HepG2DDX55
chr203428875934288787+3'-UTR,CDS3.440003.92010K562DDX55
chr203428879134288811+3'-UTR,CDS5.9808964.08735HepG2LARP4
chr203428749934287560+5'-UTR,CDS,intron-Proximal4.644755.16342K562SF3B4
chr203428735734287378+5'-UTR,intron-Proximal4.3907022.09141HepG2DDX3X
chr203428744234287502+5'-UTR,intron-Proximal5.517119.42242HepG2PCBP2
chr203428749834287569+5'-UTR,CDS,intron-Proximal3.388894.88100K562AQR
chr203428749834287547+5'-UTR,intron-Proximal4.693513.59236HepG2AQR
chr203428734634287378+5'-UTR,intron-Proximal3.9976818.05644K562DDX3X
chr203428767034287682+CDS5.3248351.92533HepG2LARP4
chr203428762334287671+CDS3.406234.01829HepG2AKAP1
chr203428755434287618+CDS,intron-Proximal4.6896657.28481K562DDX3X
chr203428762734287664+CDS4.9221840.20809HepG2DDX3X
chr203428755434287598+CDS,intron-Proximal5.4740076.49542HepG2DDX3X
chr203428766734287685+CDS3.5044927.32402HepG2DDX55
chr203428755434287597+CDS,intron-Proximal6.0203022.31498HepG2RPS3
chr203428755734287597+CDS4.4897617.81675K562PABPC4
chr203428768234287685+CDS5.3789840.30412HepG2LARP4
chr203428762434287685+CDS4.3602435.48753HepG2RPS3
chr203428762334287667+CDS3.9680631.56320HepG2DDX55
chr203428766134287670+CDS5.5897443.81432HepG2LARP4
chr203428761834287636+CDS4.7719647.34021HepG2LARP4
chr203428763634287661+CDS5.1290261.90177HepG2LARP4
chr203428755534287602+CDS4.149877.03647K562APOBEC3C
chr203428766434287685+CDS4.5518938.26175HepG2DDX3X
chr203428761834287646+CDS3.5630413.01358K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ROMO1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ROMO1 is not available on ENCORE database.

  • 94 RBPs can affect the levels of ROMO1.  








The Knockdown/knockout RNA-Seq assay for ROMO1 is not available on ENCORE database.





94 RBPs can affect the gene expression of ROMO1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ROMO1ENSG00000125995.111499.914301717.84500-0.195701.969301.37300HepG2AUH
ROMO1ENSG00000125995.11905.44610592.634500.611402.910801.90950HepG2CCAR1
ROMO1ENSG00000125995.11405.79490219.720700.885008.798807.01340HepG2YBX3
ROMO1ENSG00000125995.11882.37110598.756000.559307.382606.42840HepG2CELF1
ROMO1ENSG00000125995.11876.64630643.622200.445705.908604.88310HepG2DAZAP1
ROMO1ENSG00000125995.111126.95680906.776700.313503.885602.91830HepG2DDX19B
ROMO1ENSG00000125995.11253.84150435.51430-0.778803.589402.47890HepG2DDX59
ROMO1ENSG00000125995.11660.14000215.756201.6133011.8903010.51520HepG2DNAJC21
ROMO1ENSG00000125995.11590.21760213.840901.4646032.9980030.98490HepG2DNAJC2
ROMO1ENSG00000125995.11771.13650454.833300.761502.211501.38530HepG2EEF2
ROMO1ENSG00000125995.111007.90990608.389100.728203.752002.81280HepG2EIF4G2
ROMO1ENSG00000125995.111269.203301972.41430-0.6360014.9641013.74560HepG2ETF1
ROMO1ENSG00000125995.11519.830401162.59550-1.1612022.3999020.27220HepG2FUBP3
ROMO1ENSG00000125995.11588.37200242.284501.279902.097701.48400HepG2HNRNPC
ROMO1ENSG00000125995.11669.07520443.721200.592407.003105.93020HepG2HNRNPF
ROMO1ENSG00000125995.111203.48760586.233701.0376033.0678031.05770HepG2HNRNPL
ROMO1ENSG00000125995.11498.40940240.682901.050105.158404.35080HepG2HNRNPU
ROMO1ENSG00000125995.11421.92800245.850200.779108.756507.52420HepG2ILF2
ROMO1ENSG00000125995.11717.13470393.547200.865604.340802.91660HepG2LARP7
ROMO1ENSG00000125995.11671.64900412.880600.701902.637601.45590HepG2LIN28B
ROMO1ENSG00000125995.11657.95150355.790800.886903.721502.06140HepG2NIP7
ROMO1ENSG00000125995.11326.87640124.011201.398206.939504.66790HepG2NOLC1
ROMO1ENSG00000125995.11336.30420238.239100.497303.178502.27720HepG2PARN
ROMO1ENSG00000125995.11589.16790214.670501.4565027.4393025.30840HepG2PPIL4
ROMO1ENSG00000125995.111138.591201360.79550-0.257202.754602.20810HepG2PTBP1
ROMO1ENSG00000125995.111478.53800609.293201.2789015.3741014.12360HepG2PUF60
ROMO1ENSG00000125995.111199.67910646.852400.8910026.1142024.66860HepG2PUM1
ROMO1ENSG00000125995.111087.576401473.70590-0.438305.252604.43250HepG2QKI
ROMO1ENSG00000125995.11987.707401337.50900-0.437404.401503.56700HepG2RBM25
ROMO1ENSG00000125995.111094.68000474.596301.205606.089504.61000HepG2RBM27
ROMO1ENSG00000125995.11916.38210385.397201.249506.481804.85410HepG2RCC2
ROMO1ENSG00000125995.111229.162101514.40780-0.301103.247302.67120HepG2NELFE
ROMO1ENSG00000125995.11893.304801410.51400-0.6590012.8337011.65240HepG2RECQL
ROMO1ENSG00000125995.11948.05520437.629701.115204.200603.22360HepG2RPS2
ROMO1ENSG00000125995.11866.28840446.804500.955104.475503.09120HepG2RPS5
ROMO1ENSG00000125995.11836.73500214.340801.9648063.2370060.85400HepG2SAFB2
ROMO1ENSG00000125995.111318.38520584.342101.1738018.2760016.76790HepG2SLBP
ROMO1ENSG00000125995.11527.84430249.960901.0783017.2680015.87280HepG2SMN1
ROMO1ENSG00000125995.11650.18030323.938901.005002.657701.72120HepG2SMNDC1
ROMO1ENSG00000125995.11662.955501478.75760-1.1574035.7487034.47540HepG2SRSF1
ROMO1ENSG00000125995.111140.29970601.661200.922309.852008.76730HepG2SRSF5
ROMO1ENSG00000125995.11644.41780435.941300.563806.426505.43660HepG2SRSF7
ROMO1ENSG00000125995.11832.707501203.06860-0.530808.856907.96870HepG2SRSF9
ROMO1ENSG00000125995.111218.10700684.192100.8321021.0304019.57110HepG2SUCLG1
ROMO1ENSG00000125995.11463.414901329.23100-1.5202036.9117035.16270HepG2TAF15
ROMO1ENSG00000125995.11728.656101221.31220-0.7451011.6932010.00800HepG2TIA1
ROMO1ENSG00000125995.11618.42360233.880901.402703.502902.95380HepG2TIAL1
ROMO1ENSG00000125995.11864.36190235.958301.8730059.0532056.90070HepG2TRIM56
ROMO1ENSG00000125995.111408.53700595.353001.242304.186103.08390HepG2TUFM
ROMO1ENSG00000125995.11346.23600687.77090-0.990204.823004.00700HepG2U2AF1
ROMO1ENSG00000125995.111098.80990630.237100.801903.742702.76320HepG2UBE2L3
ROMO1ENSG00000125995.11763.41400616.595400.308002.465501.89300HepG2UTP3
ROMO1ENSG00000125995.11759.66460381.422700.993903.497802.25590HepG2XPO5
ROMO1ENSG00000125995.111192.12140562.152801.084402.292101.62650HepG2XRN2
ROMO1ENSG00000125995.11725.28310405.609700.8384011.7826010.70520K562AGGF1
ROMO1ENSG00000125995.11495.98300352.606600.492104.404302.46360K562AKAP1
ROMO1ENSG00000125995.11669.45480445.713000.586804.501703.17360K562AKAP8
ROMO1ENSG00000125995.11800.89920422.057500.9241012.2386010.73100K562AKAP8L
ROMO1ENSG00000125995.11417.71640230.195300.859603.430101.93260K562BCCIP
ROMO1ENSG00000125995.11447.62690222.542801.008103.483602.40080K562BCLAF1
ROMO1ENSG00000125995.11355.77440234.946800.598503.049601.69820K562CIRBP
ROMO1ENSG00000125995.11335.19850168.832100.989305.194703.68300K562CSTF2
ROMO1ENSG00000125995.11567.84430838.65610-0.562602.252401.37220K562CELF1
ROMO1ENSG00000125995.11419.31760299.301900.486302.728301.52620K562DDX21
ROMO1ENSG00000125995.11337.76590194.983200.792602.771301.44850K562DDX27
ROMO1ENSG00000125995.11518.18930357.323500.536102.360601.40150K562DDX3X
ROMO1ENSG00000125995.11400.29080189.475101.078907.370105.31200K562EEF2
ROMO1ENSG00000125995.11312.51810183.009100.771904.354803.19300K562EFTUD2
ROMO1ENSG00000125995.11552.28170384.452600.522503.759602.94350K562EIF2S2
ROMO1ENSG00000125995.11379.87990237.296400.678804.088401.73130K562EIF3H
ROMO1ENSG00000125995.11244.59320373.33750-0.610102.118301.39570K562EIF4A3
ROMO1ENSG00000125995.11288.92730177.694800.701203.929302.90790K562FIP1L1
ROMO1ENSG00000125995.1198.60570186.83780-0.922004.357802.89010K562FKBP4
ROMO1ENSG00000125995.1111.1041074.78230-2.751605.518904.44250K562G3BP2
ROMO1ENSG00000125995.11988.96200512.247800.949003.036302.24650K562GRSF1
ROMO1ENSG00000125995.11296.86300146.181301.021906.951705.37250K562HNRNPM
ROMO1ENSG00000125995.11367.08580240.881700.607703.677002.76410K562HSPD1
ROMO1ENSG00000125995.11546.58900219.434301.316602.936901.87110K562IGF2BP2
ROMO1ENSG00000125995.11344.46810223.104100.626604.221802.68060K562IGF2BP3
ROMO1ENSG00000125995.11609.36430447.900500.444003.180802.29160K562KIF1C
ROMO1ENSG00000125995.11127.95170208.34160-0.703403.363801.79850K562LARP7
ROMO1ENSG00000125995.11421.21980229.892100.873505.784804.38140K562MATR3
ROMO1ENSG00000125995.11360.10590180.575900.995702.994501.63220K562NONO
ROMO1ENSG00000125995.11291.17040173.454200.747203.799301.62640K562PES1
ROMO1ENSG00000125995.11439.36530201.754501.1227010.709908.79270K562PPIG
ROMO1ENSG00000125995.11453.32360178.091501.347809.713308.30240K562PRPF8
ROMO1ENSG00000125995.11391.70770223.858400.807107.240406.20410K562PTBP1
ROMO1ENSG00000125995.11489.08520791.50260-0.694503.000301.88450K562PUM1
ROMO1ENSG00000125995.11707.15630418.548900.756507.140306.31400K562PUS1
ROMO1ENSG00000125995.11603.93430407.826400.566302.818302.22030K562RBM15
ROMO1ENSG00000125995.11328.83030214.531400.616102.311201.54770K562RBM22
ROMO1ENSG00000125995.11372.22980181.331401.037505.300404.16640K562RPS19
ROMO1ENSG00000125995.11165.3690096.336400.779402.498001.55270K562RPS3
ROMO1ENSG00000125995.11281.00990371.56000-0.403002.405101.52450K562SRPK2
ROMO1ENSG00000125995.11424.10050219.480900.950203.942503.10460K562SRSF1
ROMO1ENSG00000125995.11187.7314092.988401.013404.767403.32770K562SRSF4
ROMO1ENSG00000125995.11414.93080207.345301.000706.462504.74520K562SRSF5
ROMO1ENSG00000125995.1122.0241073.39570-1.736603.456901.74320K562TAF15
ROMO1ENSG00000125995.11449.61810222.075001.017609.636508.19250K562TARDBP
ROMO1ENSG00000125995.11470.98890214.230601.1364013.3906011.46680K562TIA1
ROMO1ENSG00000125995.11448.66290210.351801.092702.986301.84310K562TRA2A
ROMO1ENSG00000125995.1128.8650074.75170-1.372802.863502.04650K562U2AF2
ROMO1ENSG00000125995.11544.38520838.91210-0.623902.913101.47010K562UBE2L3
ROMO1ENSG00000125995.11600.41280843.43430-0.490304.094703.01190K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ROMO1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of ROMO1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for ROMO1 is not avaliable on ENCORE database.