TEX30

General Information

Gene Name       : TEX30
Gene ID             : ENSG00000151287.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TEX30)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TEX30ENSG00000151287.1616.2615.8716.07ENCSR000AEF
HepG2TEX30ENSG00000151287.161.031.081.06ENCSR985KAT
K562TEX30ENSG00000151287.1621.7920.3121.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TEX30 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TEX30 RNA is bound by 2 proteins.  







eCLIP assay for TEX30 is not avaliable on ENCORE database.





2 proteins are bound to TEX30 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13103418505103418552-3'-UTR,intron-Distal3.655354.33997K562PUM2
chr13103426029103426084-5'-UTR,intron-Distal4.3701712.22508K562DDX3X
chr13103422384103422437-5'-UTR,intron-Distal,intron-Proximal4.047197.22925K562DDX3X
chr13103421660103421728-CDS,intron-Distal,intron-Proximal6.6027611.45561K562PUM2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TEX30 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TEX30 is not available on ENCORE database.

  • 23 RBPs can affect the levels of TEX30.  








The Knockdown/knockout RNA-Seq assay for TEX30 is not available on ENCORE database.





23 RBPs can affect the gene expression of TEX30 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TEX30ENSG00000151287.121.7318011.51240-2.732901.875201.36670HepG2HNRNPU
TEX30ENSG00000151287.1237.063208.466202.130102.372601.46780HepG2U2AF2
TEX30ENSG00000151287.12362.62730533.86440-0.558002.396701.84440K562AQR
TEX30ENSG00000151287.12145.83130234.26260-0.683802.632201.74490K562EFTUD2
TEX30ENSG00000151287.12463.35820345.229700.424503.024302.27770K562EIF2S2
TEX30ENSG00000151287.12331.35300210.208900.656404.502903.75670K562FXR1
TEX30ENSG00000151287.12326.48180228.253500.516302.225801.60180K562G3BP2
TEX30ENSG00000151287.12128.74140213.08240-0.726902.865802.05690K562GPKOW
TEX30ENSG00000151287.12179.69920344.36390-0.938303.812201.94670K562HNRNPAB
TEX30ENSG00000151287.12413.78500242.030000.773605.294403.95620K562HNRNPM
TEX30ENSG00000151287.12197.34230329.73050-0.740605.627404.34050K562HNRNPU
TEX30ENSG00000151287.12545.10160398.882000.450502.777201.98070K562HSPD1
TEX30ENSG00000151287.12106.97870181.90460-0.765902.725001.80000K562KRR1
TEX30ENSG00000151287.12136.40250207.98550-0.608602.167801.39160K562METAP2
TEX30ENSG00000151287.12167.74640279.02000-0.734105.140004.16760K562NSUN2
TEX30ENSG00000151287.12860.66040622.917000.466304.005902.70040K562PUM1
TEX30ENSG00000151287.12221.55780308.85900-0.479302.282701.77970K562PUS1
TEX30ENSG00000151287.12161.95870281.31750-0.796602.459701.35460K562SF1
TEX30ENSG00000151287.12171.61430275.37480-0.682204.182503.19390K562SF3A3
TEX30ENSG00000151287.12185.91570282.13230-0.601703.307602.29410K562SRPK2
TEX30ENSG00000151287.12145.56540220.79850-0.601102.247501.33720K562SUPV3L1
TEX30ENSG00000151287.12210.31140333.49770-0.665102.786502.07690K562TARDBP
TEX30ENSG00000151287.1294.36910162.53840-0.784402.933801.96910K562TIAL1
TEX30ENSG00000151287.12110.53800172.64680-0.643302.370701.50650K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TEX30 is not available on ENCORE database.





25 RBPs can affect the splicing of TEX30 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETEX30ENSG00000151287.12chr13-1034223611034224361034216601034218911034260311034261610.291000.000020.00065includedK562SRSF1
SETEX30ENSG00000151287.12chr13-103419622103419828103418459103418930103420609103420661-0.437000.000000.00000excludedK562SF3B4
SETEX30ENSG00000151287.12chr13-1034196221034198281034184591034189301034206091034206610.204000.000180.04725includedK562WDR3
SETEX30ENSG00000151287.12chr13-103422361103422436103421660103421891103426031103426161-0.130000.001540.04428excludedK562AKAP8L
SETEX30ENSG00000151287.12chr13-1034223611034224361034216601034218911034260311034261610.458000.000000.00015includedK562XRCC6
SETEX30ENSG00000151287.12chr13-1034196221034198281034184591034189301034206091034206610.173000.000690.07305includedK562FMR1
SETEX30ENSG00000151287.12chr13-1034223611034224361034216601034218911034260311034261610.277000.000020.00927includedK562WDR43
SETEX30ENSG00000151287.12chr13-103422361103422436103421660103421891103424216103424291-0.282000.000060.00112excludedK562AQR
SETEX30ENSG00000151287.12chr13-1034223611034224361034216601034218911034260311034261610.350000.000000.00014includedK562FXR1
SETEX30ENSG00000151287.12chr13-103419622103419828103418459103418930103420609103420661-0.264000.000000.00021excludedK562FXR1
SETEX30ENSG00000151287.12chr13-103421660103421891103420609103420661103426031103426109-0.086000.006420.07514excludedK562PUS1
SETEX30ENSG00000151287.12chr13-1034196221034198281034184591034189301034206091034206610.193000.000630.09705includedK562MTPAP
SETEX30ENSG00000151287.12chr13-1034196221034198281034184591034189301034206091034206610.197000.000030.01037includedK562NSUN2
SETEX30ENSG00000151287.12chr13-1034223611034224361034216601034218911034260311034261610.180000.000320.06277includedK562APOBEC3C
SETEX30ENSG00000151287.12chr13-103419622103419828103418459103418930103420609103420661-0.203000.000300.00838excludedK562U2AF1
SETEX30ENSG00000151287.12chr13-1034223611034224361034216601034218911034260311034261610.363000.000000.00022includedK562HNRNPL
SETEX30ENSG00000151287.12chr13-103421660103421891103420609103420661103426031103426109-0.105000.002230.06186excludedK562UTP18
SETEX30ENSG00000151287.12chr13-1034223611034224361034216601034218911034260311034261610.348000.000000.00103includedK562UPF1
SETEX30ENSG00000151287.12chr13-103419622103419828103418459103418930103420609103420661-0.181000.000550.01214excludedK562U2AF2
SETEX30ENSG00000151287.12chr13-1034196221034198281034184591034189301034206091034206610.282000.000000.00000includedK562HNRNPU
SETEX30ENSG00000151287.12chr13-103421660103421891103420609103420661103426031103426109-0.125000.000420.01396excludedK562RBM15
SETEX30ENSG00000151287.12chr13-103421660103421891103420609103420661103426031103426109-0.145000.000040.00189excludedK562AGGF1
SETEX30ENSG00000151287.12chr13-1034196221034198281034184591034189301034206091034206610.185000.000150.02404includedK562CPSF6
SETEX30ENSG00000151287.12chr13-1034196221034198281034184591034189301034206091034206610.161000.000020.00719includedK562ZC3H8
SETEX30ENSG00000151287.12chr13-1034223611034224361034216601034218911034260311034261610.332000.000130.05849includedK562NCBP2
SETEX30ENSG00000151287.12chr13-103419622103419828103418459103418930103420609103420661-0.210000.001230.02287excludedK562HNRNPC
MXETEX30ENSG00000151287.12chr13-1034223611034224361034242161034242911034216601034218911034260311034261610.078000.001140.010291includedK562AQR
MXETEX30ENSG00000151287.12chr13-1034223611034224501034242161034242911034216601034218911034260311034261090.111000.004030.029971includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TEX30 is not avaliable on ENCORE database.