COL4A3BP

General Information

Gene Name       : COL4A3BP
Gene ID             : ENSG00000113163.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COL4A3BP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COL4A3BPENSG00000113163.1627.2522.1324.69ENCSR000AEF
HepG2COL4A3BPENSG00000113163.1612.0017.6614.83ENCSR985KAT
K562COL4A3BPENSG00000113163.1611.5814.5213.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COL4A3BP is not avaliable on ENCORE database.



Proteins bound to RNA
  • COL4A3BP RNA is bound by 26 proteins.  







eCLIP assay for COL4A3BP is not avaliable on ENCORE database.





26 proteins are bound to COL4A3BP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr57466997374670028-3'-UTR,intron-Distal,intron-Proximal4.957294.20763HepG2U2AF2
chr57466742074667502-3'-UTR,intron-Distal5.127797.16877K562FAM120A
chr57466721574667299-3'-UTR,intron-Distal3.536415.67957K562UPF1
chr57466748674667509-3'-UTR,intron-Distal4.190133.20319K562UPF1
chr57466808374668162-3'-UTR,intron-Distal3.922223.48722HepG2PRPF4
chr57466867274668712-3'-UTR,intron-Distal4.447836.49450K562PUM2
chr57466808174668148-3'-UTR,intron-Distal3.959559.49916K562GTF2F1
chr57466809274668135-3'-UTR,intron-Distal4.8528610.50068K562FAM120A
chr57466804874668092-3'-UTR,intron-Distal4.030286.61024K562FAM120A
chr57466987174669934-3'-UTR,intron-Distal,intron-Proximal4.9364711.82794K562PUM2
chr57466803474668078-3'-UTR,intron-Distal3.913855.81489K562UPF1
chr57466733574667393-3'-UTR,intron-Distal4.837855.60103K562UPF1
chr57466807874668147-3'-UTR,intron-Distal5.2063414.07248K562UPF1
chr57466962374669667-3'-UTR,intron-Distal3.227923.14650K562TIA1
chr57466833674668380-3'-UTR,intron-Distal3.548435.32508K562PUM2
chr57466858274668643-3'-UTR,intron-Distal6.6990821.19177K562PUM2
chr57466920974669301-3'-UTR,intron-Distal3.327845.68175HepG2FUBP3
chr57467497274675104-3'-UTR,intron-Distal,intron-Proximal3.718758.89894K562KHSRP
chr57480727774807351-5'-UTR,CDS,intron-Distal,intron-Proximal4.197548.14668K562RBM15
chr57480729474807430-5'-UTR,CDS,intron-Distal,intron-Proximal3.055254.30158HepG2U2AF2
chr57471274674712822-CDS,intron-Distal3.277725.79905HepG2BCLAF1
chr57469602174696108-CDS,intron-Distal,intron-Proximal4.474705.18660HepG2PPIG
chr57480693874807009-CDS,intron-Distal3.110914.24993HepG2PPIG
chr57472219474722268-CDS,intron-Distal,intron-Proximal3.887074.82082K562ZNF622
chr57468175674681823-CDS,intron-Distal,intron-Proximal4.866976.96356K562UCHL5
chr57480181274801924-CDS,intron-Distal3.623513.02919K562GRWD1
chr57470683474706868-CDS,intron-Distal,intron-Proximal4.599413.89826HepG2BCLAF1
chr57471269874712743-CDS,intron-Distal,intron-Proximal4.305543.59941K562UCHL5
chr57472118474721269-CDS,intron-Distal,intron-Proximal3.260883.84771K562ZNF622
chr57472224874722291-CDS,intron-Distal4.187843.71570HepG2BCLAF1
chr57468172674681765-CDS,intron-Distal,intron-Proximal3.241303.27569HepG2BCLAF1
chr57468541674685488-CDS,intron-Distal,intron-Proximal3.951395.14848K562ZNF622
chr57471275474712806-CDS,intron-Distal3.996853.36385K562UCHL5
chr57468541674685470-CDS,intron-Distal,intron-Proximal3.754073.57857HepG2BCLAF1
chr57471269874712738-CDS,intron-Distal,intron-Proximal4.756605.23259HepG2BCLAF1
chr57469879574698848-CDS,intron-Distal,intron-Proximal4.083556.65960HepG2BCLAF1
chr57469602974696097-CDS,intron-Distal,intron-Proximal3.256354.70526K562DDX24
chr57471282274712858-CDS,intron-Distal3.673844.17155HepG2BCLAF1
chr57469879474698864-CDS,intron-Distal,intron-Proximal3.690926.74842K562ZNF622
chr57468177174681858-CDS,intron-Distal,intron-Proximal3.413635.15500HepG2BCLAF1
chr57469885474698889-CDS,intron-Distal,intron-Proximal3.491343.68471HepG2BCLAF1
chr57468541674685489-CDS,intron-Distal,intron-Proximal3.750035.57819K562UCHL5
chr57469609774696123-CDS,intron-Distal,intron-Proximal4.578283.02297K562DDX24
chr57469605774696121-CDS,intron-Distal,intron-Proximal4.548044.55944K562ZNF622
chr57480192874801973-CDS,intron-Distal,intron-Proximal3.661213.40045K562U2AF2
chr57468558874685694-intron-Distal,intron-Proximal6.022219.36266K562QKI
chr57475368874753821-intron-Distal4.227557.11489K562HNRNPL
chr57470943074709566-intron-Distal4.369583.87294K562TARDBP
chr57480689274806926-intron-Distal,intron-Proximal4.353344.98250K562AQR
chr57475353774753634-intron-Distal3.956613.07260HepG2AGGF1
chr57478070574780790-intron-Distal4.068324.27460K562HNRNPM
chr57476459674764718-intron-Distal4.830836.36848HepG2SUGP2
chr57476938674769460-intron-Distal3.531773.35585HepG2QKI
chr57475172174751826-intron-Distal3.984063.55640HepG2QKI
chr57475386474753902-intron-Distal3.407183.86643K562AGGF1
chr57480692674806936-intron-Distal,intron-Proximal4.015763.04871K562AQR
chr57475339674753429-intron-Distal4.123666.59866K562AGGF1
chr57478184774781910-intron-Distal4.105003.03671K562HNRNPM
chr57474499274745108-intron-Distal4.723355.07733HepG2PTBP1
chr57478172474781786-intron-Distal4.182983.78432HepG2MATR3
chr57475366974753732-intron-Distal3.087135.90995K562AGGF1
chr57474475474744892-intron-Distal3.785923.06150K562KHSRP
chr57479750374797606-intron-Distal3.739655.32632HepG2QKI
chr57478072274780796-intron-Distal4.180034.53347HepG2SUGP2
chr57478996574790051-intron-Distal3.930443.19638K562SAFB2
chr57471102474711084-intron-Distal4.227573.77802HepG2U2AF2
chr57479193674792036-intron-Distal3.301433.46531K562KHSRP
chr57475162674751675-intron-Distal4.107853.24603K562KHSRP
chr57468557774685706-intron-Distal,intron-Proximal5.664198.68064HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COL4A3BP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COL4A3BP is not available on ENCORE database.

  • 73 RBPs can affect the levels of COL4A3BP.  








The Knockdown/knockout RNA-Seq assay for COL4A3BP is not available on ENCORE database.





73 RBPs can affect the gene expression of COL4A3BP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COL4A3BPENSG00000113163.11736.51200528.113700.479803.641202.42040HepG2AATF
COL4A3BPENSG00000113163.11376.20140587.37190-0.642805.133403.83650HepG2ADAR
COL4A3BPENSG00000113163.11452.34460686.01330-0.600803.383802.34850HepG2BCCIP
COL4A3BPENSG00000113163.11943.26820712.240400.405203.733802.85680HepG2CALR
COL4A3BPENSG00000113163.11666.23190797.30360-0.259102.237201.62950HepG2CKAP4
COL4A3BPENSG00000113163.11745.91560582.690600.356202.287801.66380HepG2DDX21
COL4A3BPENSG00000113163.11887.57960570.190100.638307.147105.68940HepG2DDX24
COL4A3BPENSG00000113163.11421.85460586.27550-0.474805.008904.17200HepG2DNAJC2
COL4A3BPENSG00000113163.11796.65800536.558000.570102.940301.79370HepG2AGO1
COL4A3BPENSG00000113163.111139.26340847.265000.427103.583802.66550HepG2EIF4G2
COL4A3BPENSG00000113163.111518.695701319.319300.202901.855301.34230HepG2ETF1
COL4A3BPENSG00000113163.11419.98780611.62430-0.542303.388502.68490HepG2GPKOW
COL4A3BPENSG00000113163.11559.22850897.98900-0.683304.574603.15390HepG2GRSF1
COL4A3BPENSG00000113163.11777.568801023.19660-0.396002.820102.11430HepG2HNRNPK
COL4A3BPENSG00000113163.11557.19320673.94220-0.274402.148301.49350HepG2ILF2
COL4A3BPENSG00000113163.11649.79360888.93020-0.452104.369003.41150HepG2NOL12
COL4A3BPENSG00000113163.11487.78970653.04060-0.420903.817002.84050HepG2PARN
COL4A3BPENSG00000113163.11759.87960973.00510-0.356703.594702.92220HepG2PCBP1
COL4A3BPENSG00000113163.11448.38410588.46930-0.392203.055102.28480HepG2PPIL4
COL4A3BPENSG00000113163.11695.39620535.758900.376203.463602.60800HepG2PRPF4
COL4A3BPENSG00000113163.111050.09310743.640800.497702.639501.44440HepG2PRPF6
COL4A3BPENSG00000113163.11726.76950520.471100.481603.547902.64470HepG2PRPF8
COL4A3BPENSG00000113163.111059.03340848.584900.319502.452601.88680HepG2PUF60
COL4A3BPENSG00000113163.111173.33770900.837500.381205.825605.02940HepG2PUM1
COL4A3BPENSG00000113163.11904.936301101.86880-0.284102.430901.91820HepG2NELFE
COL4A3BPENSG00000113163.11344.76620468.61920-0.442802.710602.10040HepG2RPS19
COL4A3BPENSG00000113163.11729.56400973.97610-0.416902.221901.50480HepG2RPS3A
COL4A3BPENSG00000113163.11473.84020695.72500-0.554103.304102.24780HepG2SMNDC1
COL4A3BPENSG00000113163.11952.66050642.823100.567403.076402.25170HepG2SNRNP70
COL4A3BPENSG00000113163.111750.283801245.463600.490809.844109.05690HepG2SRFBP1
COL4A3BPENSG00000113163.111471.169801075.918100.451307.127206.45140HepG2SRSF1
COL4A3BPENSG00000113163.111534.207001081.354000.504609.223508.39360HepG2SSB
COL4A3BPENSG00000113163.111112.65620952.880000.223502.251801.67990HepG2SUCLG1
COL4A3BPENSG00000113163.111255.37480967.199400.376102.549202.00860HepG2TAF15
COL4A3BPENSG00000113163.11309.64500450.09250-0.539602.516701.56030HepG2TFIP11
COL4A3BPENSG00000113163.11492.10450646.83960-0.394403.631403.00400HepG2TRIM56
COL4A3BPENSG00000113163.111010.84140704.634100.520507.414306.51110HepG2UTP3
COL4A3BPENSG00000113163.11764.87460528.719500.532606.661405.69330HepG2ZC3H8
COL4A3BPENSG00000113163.11975.39270802.686200.281002.983402.42230HepG2ZNF622
COL4A3BPENSG00000113163.111563.953901233.978900.341804.008502.89080K562ATP5C1
COL4A3BPENSG00000113163.111018.436301320.51990-0.374803.075801.71900K562CIRBP
COL4A3BPENSG00000113163.11528.72800732.88770-0.471104.015502.71220K562CSTF2
COL4A3BPENSG00000113163.112983.920002532.785600.236402.219101.34620K562CELF1
COL4A3BPENSG00000113163.11733.37030936.00860-0.352002.767401.72610K562DDX3X
COL4A3BPENSG00000113163.11752.79170948.99530-0.334202.959501.59210K562DDX6
COL4A3BPENSG00000113163.11603.07240852.50220-0.499403.732802.66030K562EFTUD2
COL4A3BPENSG00000113163.11874.913501207.69200-0.465003.166302.40420K562EIF2S2
COL4A3BPENSG00000113163.11734.78920950.43200-0.371303.050002.21520K562EIF3G
COL4A3BPENSG00000113163.11715.19370880.66900-0.300302.363701.31980K562EIF4B
COL4A3BPENSG00000113163.112827.585902059.836600.456908.600406.97150K562EIF4G2
COL4A3BPENSG00000113163.11812.303801075.27680-0.404603.329802.39340K562FIP1L1
COL4A3BPENSG00000113163.111491.285101069.772800.479203.170302.40520K562G3BP2
COL4A3BPENSG00000113163.11546.16740868.96520-0.670006.661805.43450K562GPKOW
COL4A3BPENSG00000113163.11950.355201609.56430-0.760105.790004.69130K562GRSF1
COL4A3BPENSG00000113163.11637.79870884.38550-0.471603.210902.20320K562HNRNPM
COL4A3BPENSG00000113163.111094.926801457.91000-0.413103.736002.81640K562HSPD1
COL4A3BPENSG00000113163.11951.925301231.82840-0.371902.212601.32460K562IGF2BP2
COL4A3BPENSG00000113163.111606.965301248.066800.364503.178602.28950K562KIF1C
COL4A3BPENSG00000113163.111028.691401294.88080-0.332002.794501.95000K562MAGOH
COL4A3BPENSG00000113163.111824.888101398.153300.384203.921602.80810K562MBNL1
COL4A3BPENSG00000113163.11841.851101063.53110-0.337202.448101.68660K562MTPAP
COL4A3BPENSG00000113163.111448.27950909.268600.671506.883305.56990K562PCBP3
COL4A3BPENSG00000113163.111160.41810697.450400.7344011.312009.74680K562POLR2G
COL4A3BPENSG00000113163.11798.497401220.58700-0.612206.755105.37490K562PPIG
COL4A3BPENSG00000113163.11512.81580724.69860-0.498903.678902.61750K562PSIP1
COL4A3BPENSG00000113163.11884.756801258.03700-0.507805.981805.03720K562PTBP1
COL4A3BPENSG00000113163.112821.646102247.429000.328202.868902.03830K562PUF60
COL4A3BPENSG00000113163.113185.783002390.551700.414205.787704.19460K562PUM1
COL4A3BPENSG00000113163.111326.745601136.401500.223301.827201.32750K562RBM15
COL4A3BPENSG00000113163.11713.569801206.45890-0.7577010.139508.37590K562RBM22
COL4A3BPENSG00000113163.11491.26250661.03030-0.428203.063002.01350K562RCC2
COL4A3BPENSG00000113163.11466.42910626.65600-0.426002.761301.73880K562SRFBP1
COL4A3BPENSG00000113163.11882.26330699.546600.334702.664701.86200K562SYNCRIP
COL4A3BPENSG00000113163.11893.079201248.21130-0.483004.295903.40760K562TARDBP
COL4A3BPENSG00000113163.11477.59320732.22430-0.616504.961502.76020K562TFIP11
COL4A3BPENSG00000113163.11883.427701204.02310-0.446704.565703.47670K562TIA1
COL4A3BPENSG00000113163.11859.180001071.15230-0.318102.660301.87150K562U2AF2
COL4A3BPENSG00000113163.11953.245001253.00890-0.394505.448904.47850K562UPF1
COL4A3BPENSG00000113163.111309.861801114.883700.232402.379901.59050K562WDR43
COL4A3BPENSG00000113163.111458.466201929.03590-0.403404.235302.62720K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COL4A3BP is not available on ENCORE database.





12 RBPs can affect the splicing of COL4A3BP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.329000.000000.00007includedK562SRSF1
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.382000.000000.00000includedK562MATR3
SECOL4A3BPENSG00000113163.11chr5-746951347469521274685416746855127469602974696122-0.115000.002200.03944excludedHepG2U2AF1
SECOL4A3BPENSG00000113163.11chr5-7479575374795863747548897475500674801806748019410.055000.012850.09895includedK562AQR
SECOL4A3BPENSG00000113163.11chr5-746804667468053774677773746779027468172674681859-0.099000.000830.01047excludedK562AQR
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.250000.000030.00267includedK562FXR1
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.190000.000020.00218includedHepG2SFPQ
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.265000.000000.00019includedHepG2PTBP1
SECOL4A3BPENSG00000113163.11chr5-746951347469521274685416746855127469602974696122-0.058000.000750.08691excludedK562LARP4
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.133000.000010.00614includedK562APOBEC3C
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.423000.000000.00000includedHepG2MATR3
SECOL4A3BPENSG00000113163.11chr5-746951347469521274685416746855127469602974696122-0.100000.000280.00794excludedK562U2AF1
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.358000.000000.00000includedHepG2SRSF1
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.267000.000000.00005includedK562TARDBP
SECOL4A3BPENSG00000113163.11chr5-746951347469521274685416746855127469602974696122-0.106000.001290.04547excludedK562HNRNPU
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.320000.000000.00245includedK562SAFB
SECOL4A3BPENSG00000113163.11chr5-7469513474695212746854167468551274696029746961220.681000.000000.00000includedK562PTBP1
A3SSCOL4A3BPENSG00000113163.11chr5-7475488974755100747548897475500674801806748019410.114000.000370.00283longerK562AQR
A3SSCOL4A3BPENSG00000113163.11chr5-7472219574722349747221957472230374754889747550500.055000.004970.02874longerK562AQR
A3SSCOL4A3BPENSG00000113163.11chr5-7471270074712890747127007471285874715165747152490.110000.000020.00024longerK562AQR
A3SSCOL4A3BPENSG00000113163.11chr5-7467777374677947746777737467790274680466746805280.066000.000680.00493longerK562AQR
A3SSCOL4A3BPENSG00000113163.11chr5-7468172674681882746817267468185974685416746855120.057000.004360.02566longerK562AQR
MXECOL4A3BPENSG00000113163.11chr5-7468172674681859746854167468551274677773746779027469602974696122-0.056000.012900.077862includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COL4A3BP is not avaliable on ENCORE database.