VDR

General Information

Gene Name       : VDR
Gene ID             : ENSG00000111424.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VDR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VDRENSG00000111424.103.182.893.04ENCSR000AEF
HepG2VDRENSG00000111424.100.330.430.38ENCSR985KAT
K562VDRENSG00000111424.102.862.862.86ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VDR is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on VDR RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for VDR is not avaliable on ENCORE database.






NO known proteins are bound to VDR RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for VDR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VDR is not available on ENCORE database.

  • 54 RBPs can affect the levels of VDR.  








The Knockdown/knockout RNA-Seq assay for VDR is not available on ENCORE database.





54 RBPs can affect the gene expression of VDR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VDRENSG00000111424.66.5742030.29940-2.204402.943802.39720HepG2AKAP1
VDRENSG00000111424.635.483807.053802.330603.878501.90170HepG2APOBEC3C
VDRENSG00000111424.631.206908.616601.856602.159301.36250HepG2BCLAF1
VDRENSG00000111424.640.6383011.019601.882703.302702.22940HepG2CCAR1
VDRENSG00000111424.674.9420023.819501.653504.864103.85360HepG2CIRBP
VDRENSG00000111424.624.735305.511902.165802.616401.98940HepG2CELF1
VDRENSG00000111424.64.6592029.02820-2.639303.835803.11060HepG2DDX3X
VDRENSG00000111424.64.7074024.92720-2.404702.758202.14150HepG2DDX6
VDRENSG00000111424.631.342305.729802.451403.982103.19880HepG2DKC1
VDRENSG00000111424.623.805904.186902.507302.877702.21480HepG2DNAJC2
VDRENSG00000111424.69.2867028.73710-1.629702.293901.73780HepG2ETF1
VDRENSG00000111424.68.5785026.72050-1.639202.076501.47320HepG2FXR1
VDRENSG00000111424.63.9809024.79380-2.638803.471602.73020HepG2G3BP1
VDRENSG00000111424.639.5888010.897701.861002.924601.87610HepG2GNB2L1
VDRENSG00000111424.633.5523015.330201.129902.048401.42440HepG2HNRNPF
VDRENSG00000111424.61.4907025.09050-4.073104.872003.96600HepG2HNRNPK
VDRENSG00000111424.620.123704.711302.094602.462701.88940HepG2HNRNPU
VDRENSG00000111424.668.6282015.096802.184508.499207.29790HepG2IGF2BP1
VDRENSG00000111424.61.1864023.64400-4.316803.306702.23030HepG2IGF2BP3
VDRENSG00000111424.642.343809.732602.121103.999302.48950HepG2KRR1
VDRENSG00000111424.679.2386026.729801.567704.725703.87540HepG2MAGOH
VDRENSG00000111424.66.9520026.88140-1.951102.360401.77430HepG2MATR3
VDRENSG00000111424.67.6950027.51630-1.838302.374301.78530HepG2NCBP2
VDRENSG00000111424.645.291608.973102.335503.634302.37060HepG2NONO
VDRENSG00000111424.643.752705.617802.961206.238905.39200HepG2PUF60
VDRENSG00000111424.631.185706.100402.353804.090603.36730HepG2PUS1
VDRENSG00000111424.67.7357024.01910-1.634601.819001.37580HepG2RBM22
VDRENSG00000111424.696.5256016.500802.5483012.0794010.82890HepG2RPLP0
VDRENSG00000111424.658.3300021.926601.411503.202202.44570HepG2SF3B1
VDRENSG00000111424.63.8960024.39620-2.646602.878402.08070HepG2SNRNP70
VDRENSG00000111424.68.8917027.12910-1.609302.064001.61120HepG2SRFBP1
VDRENSG00000111424.620.974005.541801.920101.878901.34960HepG2SRSF5
VDRENSG00000111424.672.4387015.058302.266109.564508.40410HepG2SRSF7
VDRENSG00000111424.62.8777018.04660-2.648802.890302.32900HepG2SRSF9
VDRENSG00000111424.655.8658023.555201.245802.994902.46600HepG2SSB
VDRENSG00000111424.685.1949019.933702.095508.304007.41750HepG2TAF15
VDRENSG00000111424.629.871604.576402.706404.493803.88830HepG2TIAL1
VDRENSG00000111424.674.00750127.93810-0.789702.963502.37900K562AGGF1
VDRENSG00000111424.669.98140133.11900-0.927703.815703.04620K562AKAP8L
VDRENSG00000111424.677.86160127.97210-0.716802.107401.58190K562AQR
VDRENSG00000111424.6278.99730162.788200.777205.081503.54840K562CPEB4
VDRENSG00000111424.6142.7287076.258600.904203.432201.53230K562DDX51
VDRENSG00000111424.6213.26050130.329800.710303.896303.06460K562EIF2S2
VDRENSG00000111424.698.57760210.88540-1.097106.503905.08500K562EIF4G2
VDRENSG00000111424.6139.2241070.764400.976203.594701.93570K562GEMIN5
VDRENSG00000111424.670.64140141.29470-1.000102.457701.68580K562KIF1C
VDRENSG00000111424.634.3216087.34400-1.347602.853201.84320K562PABPN1
VDRENSG00000111424.679.06390167.62540-1.084104.939203.82780K562PCBP3
VDRENSG00000111424.664.96690128.57340-0.984804.012803.04200K562POLR2G
VDRENSG00000111424.6175.9009071.978601.289008.521307.39760K562PTBP1
VDRENSG00000111424.645.24530132.06260-1.545407.218406.38860K562PUS1
VDRENSG00000111424.663.61050128.63780-1.016004.277003.55520K562RBM15
VDRENSG00000111424.6119.2710069.004600.789402.840101.98770K562RBM22
VDRENSG00000111424.6128.9147072.619600.827903.146601.97320K562NELFE
VDRENSG00000111424.6384.31130259.369100.567203.966702.27930K562UBE2L3
VDRENSG00000111424.670.66630141.60040-1.002704.627103.47970K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VDR is not available on ENCORE database.






No RBPs affect the alternative splcing events of VDR on ENCORE database.





The Knockdown/knockout RNA-Seq assay for VDR is not avaliable on ENCORE database.