TSFM

General Information

Gene Name       : TSFM
Gene ID             : ENSG00000123297.17
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TSFM)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSFMENSG00000123297.1728.8730.1029.48ENCSR000AEF
HepG2TSFMENSG00000123297.1732.8743.4738.17ENCSR985KAT
K562TSFMENSG00000123297.1741.2537.2139.23ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSFM is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSFM RNA is bound by 12 proteins.  







eCLIP assay for TSFM is not avaliable on ENCORE database.





12 proteins are bound to TSFM RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125817991258179950+3'-UTR,CDS,intron-Proximal4.784594.13847K562AQR
chr125817992658179989+3'-UTR,CDS,intron-Proximal3.957163.18234K562BUD13
chr125817995058179995+3'-UTR,CDS3.549853.79442K562AQR
chr125819036158190471+3'-UTR,CDS,intron-Distal3.310873.17151K562UCHL5
chr125817997358180047+3'-UTR,CDS3.857873.11168K562ZNF622
chr125817705358177152+5'-UTR,CDS,intron-Proximal3.320226.41344HepG2PRPF8
chr125817663058176707+5'-UTR,CDS,intron-Distal,intron-Proximal5.009746.69228HepG2PRPF8
chr125817706458177125+5'-UTR,CDS,intron-Proximal5.8451010.84943K562AQR
chr125817660758176644+5'-UTR,CDS,intron-Distal,intron-Proximal4.131504.17587HepG2DDX3X
chr125817658258176645+5'-UTR,CDS,intron-Distal,intron-Proximal3.988076.98150K562DDX3X
chr125817688958176934+5'-UTR,CDS,intron-Proximal5.667358.43873K562DDX3X
chr125817683758176923+5'-UTR,CDS,intron-Proximal5.234827.63570K562AQR
chr125817636558176462+5'-UTR,intron-Distal3.888053.50219HepG2CSTF2
chr125817636458176479+5'-UTR,intron-Distal4.390584.75311K562CSTF2T
chr125817636758176415+5'-UTR,intron-Distal5.091988.42929K562FMR1
chr125817666758176847+5'-UTR,intron-Distal,intron-Proximal4.325457.70131HepG2PCBP2
chr125817693458176993+5'-UTR,CDS3.380967.50590K562DDX3X
chr125817682858176962+5'-UTR,CDS,intron-Proximal3.386745.12722K562BUD13
chr125818093058181036+CDS,intron-Proximal3.088783.73266K562KHSRP
chr125818007258180120+3'-UTR,CDS,intron-Proximal5.077076.44303K562AQR
chr125818114958181250+intron-Distal4.327803.49011K562KHSRP
chr125817670458176830+intron-Distal,intron-Proximal4.193474.33022HepG2HNRNPK
chr125818115958181221+intron-Distal3.911973.20552HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSFM is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSFM is not available on ENCORE database.

  • 56 RBPs can affect the levels of TSFM.  








The Knockdown/knockout RNA-Seq assay for TSFM is not available on ENCORE database.





56 RBPs can affect the gene expression of TSFM :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSFMENSG00000123297.12441.92860584.99890-0.404602.204301.49840HepG2ASCC1
TSFMENSG00000123297.12624.10130793.28700-0.346103.212402.48180HepG2AUH
TSFMENSG00000123297.12431.38820277.952500.634002.896802.11400HepG2CNOT7
TSFMENSG00000123297.12199.47210329.52570-0.724204.418003.56650HepG2CPSF6
TSFMENSG00000123297.12508.09750640.71580-0.334602.478801.86390HepG2CELF1
TSFMENSG00000123297.12263.05590388.55360-0.562703.488102.73460HepG2DDX21
TSFMENSG00000123297.12346.69530493.21890-0.508602.457601.72450HepG2DDX55
TSFMENSG00000123297.12403.99170581.84310-0.526302.931902.29770HepG2DDX6
TSFMENSG00000123297.12291.68680389.77530-0.418202.584301.89980HepG2DNAJC21
TSFMENSG00000123297.12307.85020559.27610-0.861307.256706.33020HepG2EIF2S1
TSFMENSG00000123297.12434.29970601.80270-0.470602.189401.57460HepG2EIF4B
TSFMENSG00000123297.12243.52500393.50910-0.692304.709503.89600HepG2HNRNPA1
TSFMENSG00000123297.12488.11340633.13460-0.375303.005902.03710HepG2HNRNPA2B1
TSFMENSG00000123297.12305.02610437.69650-0.521003.050702.32710HepG2HNRNPC
TSFMENSG00000123297.12409.61130527.47030-0.364802.794702.07400HepG2HNRNPF
TSFMENSG00000123297.12253.59100434.80340-0.777908.330607.31900HepG2HNRNPU
TSFMENSG00000123297.12414.69560519.40430-0.324801.945501.33000HepG2IGF2BP1
TSFMENSG00000123297.12910.96550627.359500.538003.729003.00640HepG2MATR3
TSFMENSG00000123297.12232.60320363.58960-0.644402.837201.85610HepG2MTPAP
TSFMENSG00000123297.12267.26920452.86560-0.760803.143401.97430HepG2NONO
TSFMENSG00000123297.12399.33820571.79740-0.517903.243302.46380HepG2PABPC4
TSFMENSG00000123297.12341.05490576.81030-0.758109.528008.51080HepG2PCBP1
TSFMENSG00000123297.12205.64400380.51970-0.887805.936104.80260HepG2PRPF8
TSFMENSG00000123297.12472.55030586.91510-0.312702.086401.59860HepG2PTBP1
TSFMENSG00000123297.12404.61690652.10290-0.688506.610705.74300HepG2PUF60
TSFMENSG00000123297.12471.78350635.66680-0.430103.382102.70040HepG2QKI
TSFMENSG00000123297.12493.37440653.18920-0.404803.422002.83360HepG2NELFE
TSFMENSG00000123297.12465.07400608.34060-0.387403.103302.45570HepG2RECQL
TSFMENSG00000123297.12325.66650568.26470-0.803207.827806.76990HepG2RPLP0
TSFMENSG00000123297.12459.33920625.27840-0.444904.329603.48040HepG2SLBP
TSFMENSG00000123297.12548.81640392.571600.483302.008001.34730HepG2SNRNP70
TSFMENSG00000123297.12415.57350518.23370-0.318502.382401.73320HepG2SRSF7
TSFMENSG00000123297.12420.72400518.89440-0.302602.096501.60240HepG2SRSF9
TSFMENSG00000123297.12552.99000746.50840-0.432904.649404.01890HepG2SSB
TSFMENSG00000123297.12282.18000491.00370-0.799105.211804.32970HepG2SUPV3L1
TSFMENSG00000123297.12356.14760573.27620-0.686807.314606.47810HepG2TAF15
TSFMENSG00000123297.12367.32010526.78620-0.520204.087603.07840HepG2TIA1
TSFMENSG00000123297.12346.91970426.26720-0.297201.811701.33620HepG2TRIM56
TSFMENSG00000123297.12285.71830375.90140-0.395802.495801.82690HepG2UPF1
TSFMENSG00000123297.12258.88110413.41660-0.675305.759905.04570HepG2ZNF622
TSFMENSG00000123297.12538.31720418.069500.364601.992601.43660K562AKAP8L
TSFMENSG00000123297.121400.80350984.006400.509403.388802.75310K562AQR
TSFMENSG00000123297.12279.85560405.43520-0.534803.513702.62900K562CPSF6
TSFMENSG00000123297.12903.40300743.995800.280002.522101.89570K562DDX47
TSFMENSG00000123297.12586.45270449.925100.382202.799201.92000K562DKC1
TSFMENSG00000123297.12271.82400398.64850-0.552403.026101.83650K562FKBP4
TSFMENSG00000123297.12794.01050377.641801.0720019.6134018.11550K562FXR1
TSFMENSG00000123297.12545.46760713.22820-0.386902.922601.81710K562HNRNPA1
TSFMENSG00000123297.12280.01450459.37290-0.714205.550404.73380K562HNRNPC
TSFMENSG00000123297.12815.88530514.188600.666005.511904.13880K562HNRNPM
TSFMENSG00000123297.12521.01910789.85830-0.600307.054205.62650K562HNRNPU
TSFMENSG00000123297.12626.10120458.559800.449203.507202.55480K562MAGOH
TSFMENSG00000123297.12607.56500457.615600.408802.937901.98370K562MATR3
TSFMENSG00000123297.12493.43050348.399200.502002.311101.52180K562NAA15
TSFMENSG00000123297.12511.39400625.25520-0.290002.254201.57460K562NSUN2
TSFMENSG00000123297.12662.90040435.965400.604504.664403.69190K562PRPF8
TSFMENSG00000123297.12666.28170445.526400.580505.707004.78250K562PTBP1
TSFMENSG00000123297.12591.86580414.670000.513203.279302.69620K562PUS1
TSFMENSG00000123297.12584.61030444.094700.396502.058101.35860K562RPS19
TSFMENSG00000123297.12675.19650436.774700.628306.013904.98020K562SRSF1
TSFMENSG00000123297.12614.62950473.367700.376702.667801.86450K562SYNCRIP
TSFMENSG00000123297.12283.76510396.15070-0.481402.393301.52760K562TIAL1
TSFMENSG00000123297.12264.99230420.78620-0.667104.536403.25750K562TRIM56
TSFMENSG00000123297.12331.22040662.97130-1.0012016.9017015.29190K562UPF1
TSFMENSG00000123297.12401.12270567.28370-0.500003.768302.74520K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSFM is not available on ENCORE database.





12 RBPs can affect the splicing of TSFM :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958191367-0.077000.010390.09409excludedHepG2U2AF2
SETSFMENSG00000123297.12chr12+581867685818685658180757581809455818995958191367-0.375000.000000.00000excludedK562AQR
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958190150-0.502000.000000.00000excludedK562PUS1
SETSFMENSG00000123297.12chr12+5818676858186856581808225818094558189959581913670.052000.000260.05508includedK562APOBEC3C
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958191367-0.200000.000000.00018excludedK562U2AF1
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958191367-0.132000.000230.00933excludedHepG2SF3A3
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958191367-0.087000.000720.05188excludedK562HNRNPUL1
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958191367-0.192000.000720.02673excludedK562UTP18
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958191367-0.119000.003810.05825excludedK562U2AF2
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958191367-0.093000.001270.04514excludedK562HNRNPU
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958191367-0.212000.000020.00113excludedK562RBM15
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958191367-0.181000.000390.01304excludedK562AGGF1
SETSFMENSG00000123297.12chr12+5817739758177435581768925817706658179945581800740.078000.000790.01591includedK562HNRNPC
SETSFMENSG00000123297.12chr12+581867685818685658180822581809455818995958190150-0.131000.004590.06495excludedK562HNRNPC
A3SSTSFMENSG00000123297.12chr12+5818080058180945581808225818094558179836581800740.066000.000000.00000longerK562AQR
A5SSTSFMENSG00000123297.12chr12+5817656958176813581765695817664158176892581770660.144000.000090.00504longerK562PUS1
A5SSTSFMENSG00000123297.12chr12+5817656958176813581765695817664158176892581770070.284000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSFM is not avaliable on ENCORE database.