PCMT1

General Information

Gene Name       : PCMT1
Gene ID             : ENSG00000120265.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PCMT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PCMT1ENSG00000120265.1731.1942.3936.79ENCSR000AEF
HepG2PCMT1ENSG00000120265.17123.86136.11129.99ENCSR985KAT
K562PCMT1ENSG00000120265.17261.13203.58232.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PCMT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PCMT1 RNA is bound by 29 proteins.  







eCLIP assay for PCMT1 is not avaliable on ENCORE database.





29 proteins are bound to PCMT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6150111153150111196+3'-UTR,CDS,intron-Proximal5.136918.81873K562RPS3
chr6150111111150111174+3'-UTR,CDS4.2625512.57478K562SND1
chr6150117567150117633+3'-UTR,CDS4.334423.96931HepG2G3BP1
chr6150114709150114806+3'-UTR,CDS,intron-Proximal4.9770614.92494K562LIN28B
chr6150111174150111194+3'-UTR,CDS5.072488.87572K562SND1
chr6150132455150132509+3'-UTR4.8345152.78394K562PUM2
chr6150123572150123629+3'-UTR,intron-Distal,intron-Proximal4.978127.36168HepG2SUB1
chr6150132430150132489+3'-UTR4.917256.59502HepG2DDX55
chr6150132252150132305+3'-UTR4.9189775.92860K562PUM2
chr6150123512150123550+3'-UTR,intron-Proximal3.641606.29497K562PABPC4
chr6150132406150132444+3'-UTR3.385896.15559K562PABPC4
chr6150114755150114807+3'-UTR,CDS,intron-Proximal3.979523.89395K562GRWD1
chr6150111088150111111+3'-UTR,CDS,intron-Proximal4.167598.93611K562SND1
chr6150094244150094353+3'-UTR,CDS,intron-Proximal3.634815.28960K562AQR
chr6150114684150114716+3'-UTR,CDS,intron-Proximal4.033907.79897K562SND1
chr6150114742150114807+3'-UTR,CDS,intron-Proximal4.018047.10876HepG2LIN28B
chr6150132305150132355+3'-UTR5.88966400.00000K562PUM2
chr6150132055150132132+3'-UTR4.113158.04249HepG2SUB1
chr6150132444150132530+3'-UTR4.3556617.81675K562PABPC4
chr6150132405150132455+3'-UTR4.6667350.92028K562PUM2
chr6150132419150132501+3'-UTR4.178154.00100K562TIA1
chr6150094287150094305+3'-UTR,CDS3.741888.40720K562SND1
chr6150117564150117626+3'-UTR,CDS3.014704.17343K562SND1
chr6150071330150071429+5'-UTR,intron-Distal,intron-Proximal3.946895.86179K562XRN2
chr6150071319150071408+5'-UTR,intron-Distal,intron-Proximal4.400244.70436K562EWSR1
chr6150071030150071084+5'-UTR,CDS3.204598.92387K562SND1
chr6150092327150092403+5'-UTR,CDS,intron-Distal,intron-Proximal3.092916.77713K562IGF2BP2
chr6150070848150070910+5'-UTR,CDS3.608606.67587HepG2DDX3X
chr6150092333150092394+5'-UTR,CDS,intron-Distal4.010673.11282HepG2G3BP1
chr6150070887150071076+5'-UTR,CDS3.1787816.81739HepG2RPS3
chr6150071019150071092+5'-UTR,CDS3.2601526.39986K562DDX3X
chr6150070915150071052+5'-UTR,CDS3.4347633.18929K562GEMIN5
chr6150071349150071400+5'-UTR,intron-Distal3.182753.21001HepG2XRN2
chr6150071020150071081+5'-UTR,CDS3.6325719.37445HepG2DDX3X
chr6150117588150117638+CDS,intron-Proximal4.849067.15341HepG2RPS3
chr6150071083150071136+CDS,intron-Proximal4.583524.92499HepG2AQR
chr6150123356150123473+CDS3.306866.97623K562APOBEC3C
chr6150123343150123442+CDS3.058689.15761K562UCHL5
chr6150123462150123493+CDS3.267374.02386K562PABPC4
chr6150123363150123416+CDS3.967448.97074HepG2RPS3
chr6150123335150123450+CDS,intron-Proximal3.814107.66738HepG2G3BP1
chr6150071038150071081+CDS3.669015.99466K562RPS3
chr6150117584150117638+CDS,intron-Proximal4.120596.92877HepG2SND1
chr6150123363150123417+CDS5.8116418.07637K562RPS3
chr6150117570150117640+CDS,intron-Proximal3.410486.23940HepG2PPIG
chr6150123355150123460+CDS4.617575.82083HepG2GRWD1
chr6150117577150117637+CDS,intron-Proximal4.8444320.26606K562RPS3
chr6150123363150123424+CDS4.325373.48187K562RBM15
chr6150089777150089791+intron-Distal3.540764.28038HepG2HNRNPC
chr6150102966150103074+intron-Distal5.191587.62903HepG2QKI
chr6150102910150103062+intron-Distal3.864146.87274K562HNRNPL
chr6150115003150115084+intron-Distal4.442174.22101K562PRPF8
chr6150122595150122613+intron-Distal3.243337.47024HepG2AQR
chr6150072007150072148+intron-Distal3.070526.18285K562KHSRP
chr6150081193150081292+intron-Distal4.999197.76609HepG2HNRNPL
chr6150074392150074453+intron-Distal3.174315.23331K562KHSRP
chr6150082372150082425+intron-Distal4.057373.77753HepG2ILF3
chr6150076600150076687+intron-Distal4.030193.82910K562NONO
chr6150085366150085523+intron-Distal3.576526.60828HepG2QKI
chr6150099687150099738+intron-Distal3.258353.80761K562PTBP1
chr6150102982150103077+intron-Distal5.829889.36266K562QKI
chr6150083145150083212+intron-Distal3.083035.57010K562KHSRP
chr6150089602150089655+intron-Distal4.507376.29797HepG2HNRNPC
chr6150071453150071502+intron-Distal,intron-Proximal3.102364.74580K562DROSHA
chr6150081111150081154+intron-Distal3.314663.62826K562HNRNPL
chr6150122613150122646+intron-Distal3.219748.22090HepG2AQR
chr6150098923150098988+intron-Distal4.330323.55787K562PTBP1
chr6150100797150100852+intron-Distal3.868113.71997HepG2ILF3
chr6150074317150074385+intron-Distal3.5977410.10950K562KHSRP
chr6150076677150076710+intron-Distal3.770073.02234K562KHSRP
chr6150071098150071141+intron-Proximal3.675174.41130K562AQR
chr6150071092150071098+intron-Proximal3.331153.04392K562AQR
chr6150071099150071179+intron-Proximal4.957268.51597K562NONO
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PCMT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PCMT1 is not available on ENCORE database.

  • 80 RBPs can affect the levels of PCMT1.  








The Knockdown/knockout RNA-Seq assay for PCMT1 is not available on ENCORE database.





80 RBPs can affect the gene expression of PCMT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PCMT1ENSG00000120265.122123.976501396.204300.6052015.9473014.74300HepG2ACO1
PCMT1ENSG00000120265.122237.339101732.670400.368702.837202.04390HepG2ASCC1
PCMT1ENSG00000120265.121129.664101395.98680-0.305404.122403.34160HepG2CKAP4
PCMT1ENSG00000120265.121089.691801443.43720-0.405603.280202.53750HepG2CPSF6
PCMT1ENSG00000120265.121664.111002407.15510-0.5326014.7474013.27140HepG2DAZAP1
PCMT1ENSG00000120265.12914.820401288.60570-0.494303.880103.09050HepG2DDX21
PCMT1ENSG00000120265.12947.079501251.19000-0.401702.940301.50540HepG2DDX28
PCMT1ENSG00000120265.122961.831702005.958900.562105.952205.06800HepG2DDX3X
PCMT1ENSG00000120265.122429.455301723.188700.495504.090803.35100HepG2DDX6
PCMT1ENSG00000120265.121023.755401357.94070-0.407505.136204.20530HepG2DNAJC21
PCMT1ENSG00000120265.12778.511801345.97770-0.7899021.5771019.91140HepG2DNAJC2
PCMT1ENSG00000120265.121192.230001636.30720-0.456803.480502.76880HepG2GPKOW
PCMT1ENSG00000120265.121027.017401524.93820-0.570306.595005.56130HepG2HNRNPC
PCMT1ENSG00000120265.121260.297301799.35980-0.513709.390908.16620HepG2HNRNPF
PCMT1ENSG00000120265.121622.962302192.76650-0.4341010.247409.02940HepG2HNRNPL
PCMT1ENSG00000120265.121099.796401561.55280-0.505704.637303.84380HepG2HNRNPLL
PCMT1ENSG00000120265.121279.634301514.85550-0.243402.541901.96090HepG2HNRNPU
PCMT1ENSG00000120265.121348.920401771.86400-0.393504.286303.40180HepG2IGF2BP1
PCMT1ENSG00000120265.121025.098401547.37320-0.5941014.6192013.08480HepG2ILF2
PCMT1ENSG00000120265.121296.000901751.79940-0.434802.698901.71140HepG2KHSRP
PCMT1ENSG00000120265.122411.046401847.715300.383803.021602.33650HepG2MAGOH
PCMT1ENSG00000120265.121073.049301592.45260-0.569503.592002.47900HepG2MTPAP
PCMT1ENSG00000120265.121912.256602386.92430-0.319903.834602.93590HepG2NOL12
PCMT1ENSG00000120265.12875.483001516.53320-0.792604.773503.31530HepG2NONO
PCMT1ENSG00000120265.121845.419101173.225000.653403.877002.81330HepG2PABPC1
PCMT1ENSG00000120265.121019.635601499.43600-0.5564010.146508.69700HepG2PARN
PCMT1ENSG00000120265.121446.644501771.31960-0.292103.509802.84370HepG2PCBP1
PCMT1ENSG00000120265.12923.955101351.12850-0.548308.434507.19630HepG2PPIL4
PCMT1ENSG00000120265.122048.264602418.69170-0.239803.864303.18870HepG2PUM1
PCMT1ENSG00000120265.121976.230502416.94670-0.290403.085002.37590HepG2PUM2
PCMT1ENSG00000120265.121440.048701951.94160-0.438805.855604.99450HepG2QKI
PCMT1ENSG00000120265.121303.076001551.89160-0.252102.079701.32300HepG2RBM15
PCMT1ENSG00000120265.121914.291902258.74900-0.238702.312601.82760HepG2RBM22
PCMT1ENSG00000120265.122131.725301771.577500.266902.352801.72530HepG2RBM25
PCMT1ENSG00000120265.121575.407601938.22850-0.299002.292701.66240HepG2RPLP0
PCMT1ENSG00000120265.121215.148101514.98520-0.318202.423801.67090HepG2RPS2
PCMT1ENSG00000120265.121087.718501349.04040-0.310603.944303.19800HepG2SAFB2
PCMT1ENSG00000120265.122500.394101435.474000.800505.088604.15540HepG2SF3A3
PCMT1ENSG00000120265.121214.997901545.66260-0.347302.768702.06160HepG2SF3B1
PCMT1ENSG00000120265.121635.772902184.65300-0.417409.076407.92050HepG2SLBP
PCMT1ENSG00000120265.122786.044601958.670300.5082012.6243011.77300HepG2SRSF1
PCMT1ENSG00000120265.121903.059802249.64340-0.241403.051502.39760HepG2SRSF5
PCMT1ENSG00000120265.121355.423101767.78320-0.383205.613704.67930HepG2SRSF7
PCMT1ENSG00000120265.121919.951201593.533500.268703.000702.43060HepG2SRSF9
PCMT1ENSG00000120265.122272.144102558.50010-0.171202.168501.60540HepG2SUCLG1
PCMT1ENSG00000120265.12857.601201521.87490-0.8275011.9378010.59320HepG2TARDBP
PCMT1ENSG00000120265.121344.626501617.66320-0.266702.131401.39600HepG2TIA1
PCMT1ENSG00000120265.12986.312601471.93020-0.577608.575307.78330HepG2TIAL1
PCMT1ENSG00000120265.121049.172601485.12580-0.501308.877407.95680HepG2TRIM56
PCMT1ENSG00000120265.121726.127701367.801700.335602.521001.91930HepG2U2AF1
PCMT1ENSG00000120265.121366.735802356.08420-0.785709.844308.22700HepG2UBE2L3
PCMT1ENSG00000120265.12734.11010971.25390-0.403902.726501.97190HepG2UCHL5
PCMT1ENSG00000120265.121419.426901080.383400.393706.105605.16950HepG2ZC3H8
PCMT1ENSG00000120265.121747.224401400.107300.319405.293704.59930HepG2ZNF622
PCMT1ENSG00000120265.124782.909003572.890400.4207010.440409.42930K562AGGF1
PCMT1ENSG00000120265.124699.210203926.155400.259202.318601.43160K562AKAP8
PCMT1ENSG00000120265.125420.881303717.776200.544008.345507.14970K562AKAP8L
PCMT1ENSG00000120265.125015.906506386.71390-0.348603.854803.18540K562AQR
PCMT1ENSG00000120265.124789.874503900.883600.296104.297303.13100K562ATP5C1
PCMT1ENSG00000120265.121096.997201544.01740-0.493102.791501.73260K562CCAR1
PCMT1ENSG00000120265.123900.537004518.48660-0.212202.543201.48310K562CPEB4
PCMT1ENSG00000120265.122538.219003097.46870-0.287302.833602.04160K562CPSF6
PCMT1ENSG00000120265.123734.571602886.328500.371602.692601.43240K562EEF2
PCMT1ENSG00000120265.123655.384104247.10770-0.216502.596001.89470K562EIF2S2
PCMT1ENSG00000120265.121010.241701570.60330-0.636603.183602.09740K562EIF3A
PCMT1ENSG00000120265.126111.229807009.99280-0.198002.232201.38480K562EIF4G2
PCMT1ENSG00000120265.122304.248402814.45340-0.288602.667202.07910K562HNRNPC
PCMT1ENSG00000120265.124323.925703113.563800.473704.419303.22370K562HNRNPM
PCMT1ENSG00000120265.125213.606903945.413100.402005.045003.86680K562KIF1C
PCMT1ENSG00000120265.124674.623403776.793400.307602.943401.82600K562MAK16
PCMT1ENSG00000120265.125431.078104419.869900.297103.157802.17460K562MBNL1
PCMT1ENSG00000120265.122363.433602886.70270-0.288502.588801.74640K562METAP2
PCMT1ENSG00000120265.123058.225403539.99210-0.211103.045602.19900K562MTPAP
PCMT1ENSG00000120265.124438.725903098.015500.518703.599202.56050K562NAA15
PCMT1ENSG00000120265.123573.998803933.33320-0.138202.168801.49980K562NSUN2
PCMT1ENSG00000120265.123501.722602714.052900.367503.657802.79540K562PRPF8
PCMT1ENSG00000120265.121823.236302523.40180-0.468905.594004.23780K562PSIP1
PCMT1ENSG00000120265.126503.237007971.01040-0.293604.655603.40010K562PUM2
PCMT1ENSG00000120265.125601.833703686.857700.603408.802907.88290K562PUS1
PCMT1ENSG00000120265.124944.056903592.416900.460609.131108.07800K562RBM15
PCMT1ENSG00000120265.123748.225102775.390100.433403.125001.70860K562RRP9
PCMT1ENSG00000120265.121657.824302182.29130-0.396603.819002.55640K562SRFBP1
PCMT1ENSG00000120265.123509.843103976.22980-0.180002.713301.78490K562SRPK2
PCMT1ENSG00000120265.121701.839202338.42560-0.458405.743304.12200K562SRSF4
PCMT1ENSG00000120265.123491.326904128.77160-0.241902.329901.58700K562TIA1
PCMT1ENSG00000120265.127018.161508623.35900-0.297203.147301.64540K562UBE2L3
PCMT1ENSG00000120265.122088.417902781.54410-0.413502.954601.89460K562UCHL5
PCMT1ENSG00000120265.123656.819904170.58990-0.189702.633601.93290K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PCMT1 is not available on ENCORE database.





13 RBPs can affect the splicing of PCMT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPCMT1ENSG00000120265.12chr6+150094273150094305150070909150071092150111089150111194-0.073000.000050.00101excludedK562AQR
A5SSPCMT1ENSG00000120265.12chr6+150123335150123552150123335150123505150131751150132556-0.140000.000100.01635shorterK562RBM22
A5SSPCMT1ENSG00000120265.12chr6+1501233351501235521501233351501235051501317511501325560.238000.000000.00177longerHepG2TIAL1
A5SSPCMT1ENSG00000120265.12chr6+1501233351501235521501233351501235051501317511501325560.178000.000090.00772longerHepG2SRSF1
A5SSPCMT1ENSG00000120265.12chr6+1501233351501235521501233351501235051501317511501325560.194000.000000.00000longerK562PTBP1
A5SSPCMT1ENSG00000120265.12chr6+1501233351501235521501233351501235051501317511501325560.123000.000300.03361longerK562PRPF8
A5SSPCMT1ENSG00000120265.12chr6+1501233351501235521501233351501235051501317511501325560.163000.000110.02191longerHepG2AKAP1
A5SSPCMT1ENSG00000120265.12chr6+1501233351501235521501233351501235051501317511501325560.117000.000630.06368longerK562EFTUD2
A5SSPCMT1ENSG00000120265.12chr6+1501233351501235521501233351501235051501317511501325560.198000.000020.00480longerHepG2MATR3
A5SSPCMT1ENSG00000120265.12chr6+150123342150123560150123342150123552150131751150131937-0.159000.000000.00000shorterK562SRSF1
MXEPCMT1ENSG00000120265.12chr6+1501175501501176361501233351501235521501146841501148051501317511501325560.051000.000000.000071includedK562PUS1
MXEPCMT1ENSG00000120265.12chr6+1501175501501176361501233351501235051501146841501148051501317511501325560.058000.000050.001761includedK562PUS1
MXEPCMT1ENSG00000120265.12chr6+1501175501501176361501233351501235051501146841501148051501317511501325560.057000.000170.009971includedK562AGGF1
MXEPCMT1ENSG00000120265.12chr6+150114684150114805150117520150117636150111058150111194150123335150123505-0.080000.003770.028392includedK562AQR
MXEPCMT1ENSG00000120265.12chr6+150114684150114805150117550150117636150111089150111194150123335150123505-0.079000.003570.027122includedK562AQR
MXEPCMT1ENSG00000120265.12chr6+150117550150117636150123335150123552150114684150114805150131751150132556-0.063000.002650.021052includedK562AQR
MXEPCMT1ENSG00000120265.12chr6+150111089150111194150123335150123552150094273150094305150131751150132556-0.151000.000550.012552includedK562HNRNPC
MXEPCMT1ENSG00000120265.12chr6+150117550150117636150123335150123552150114684150114805150131751150132556-0.067000.001360.024752includedK562SF3B4
MXEPCMT1ENSG00000120265.12chr6+150117550150117636150123335150123552150114684150114805150131751150132556-0.091000.000200.006672includedK562PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PCMT1 is not avaliable on ENCORE database.