NEO1

General Information

Gene Name       : NEO1
Gene ID             : ENSG00000067141.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NEO1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NEO1ENSG00000067141.160.290.470.38ENCSR000AEF
HepG2NEO1ENSG00000067141.1614.5512.3813.46ENCSR985KAT
K562NEO1ENSG00000067141.160.400.320.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NEO1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NEO1 RNA is bound by 7 proteins.  







eCLIP assay for NEO1 is not avaliable on ENCORE database.





7 proteins are bound to NEO1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157359582373595892+3'-UTR5.364786.19628HepG2FAM120A
chr157359728973597407+3'-UTR3.529315.09017HepG2UPF1
chr157334481873345010+5'-UTR,intron-Proximal5.3607528.64009HepG2DDX3X
chr157358573073585834+CDS,intron-Distal,intron-Proximal5.2455712.06885HepG2PCBP2
chr157334504873345127+CDS3.9239811.21395HepG2DDX3X
chr157359068873590806+CDS,intron-Proximal4.230077.91055HepG2IGF2BP1
chr157346878973468866+CDS4.372823.38968HepG2BCLAF1
chr157358577373585888+CDS,intron-Distal3.8651410.33493HepG2IGF2BP1
chr157337662873376680+intron-Distal5.069716.64929HepG2QKI
chr157334831673348384+intron-Distal4.302774.17759HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NEO1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NEO1 is not available on ENCORE database.

  • 63 RBPs can affect the levels of NEO1.  








The Knockdown/knockout RNA-Seq assay for NEO1 is not available on ENCORE database.





63 RBPs can affect the gene expression of NEO1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NEO1ENSG00000067141.12630.74360984.62250-0.642505.805804.69110HepG2ASCC1
NEO1ENSG00000067141.121071.582601299.96590-0.278701.856701.35840HepG2BOP1
NEO1ENSG00000067141.122521.778901762.512000.516703.891702.72260HepG2CCAR1
NEO1ENSG00000067141.12546.73740935.45140-0.774807.987806.72480HepG2CIRBP
NEO1ENSG00000067141.12718.38620986.71500-0.457906.623105.67470HepG2CKAP4
NEO1ENSG00000067141.121554.071401287.964100.270903.483802.66920HepG2DAZAP1
NEO1ENSG00000067141.121274.62320936.060000.445304.158203.34270HepG2DDX21
NEO1ENSG00000067141.121152.84500916.251200.331302.713001.80960HepG2DDX24
NEO1ENSG00000067141.12884.033401207.92980-0.450404.005702.46250HepG2DDX47
NEO1ENSG00000067141.12474.77520716.53150-0.593804.439703.48330HepG2DDX55
NEO1ENSG00000067141.12951.649401341.29270-0.495104.637403.34350HepG2DDX5
NEO1ENSG00000067141.12545.77390944.18200-0.7908013.8912012.61220HepG2DKC1
NEO1ENSG00000067141.12765.987101040.38440-0.441702.812802.16830HepG2EIF4A3
NEO1ENSG00000067141.12725.973401270.66060-0.8076017.2809015.56760HepG2EIF4G1
NEO1ENSG00000067141.121970.219701706.796300.207002.021901.49020HepG2ETF1
NEO1ENSG00000067141.12603.74620892.16030-0.563405.621804.08270HepG2FASTKD2
NEO1ENSG00000067141.122254.973001455.935000.631106.292205.17710HepG2FIP1L1
NEO1ENSG00000067141.12651.25260973.68440-0.580204.611403.76160HepG2G3BP1
NEO1ENSG00000067141.12832.801801183.67870-0.507207.161005.77720HepG2HNRNPA2B1
NEO1ENSG00000067141.12966.714501173.23490-0.279303.290802.56050HepG2HNRNPL
NEO1ENSG00000067141.121780.864001272.057500.485303.424802.05280HepG2HSPD1
NEO1ENSG00000067141.12903.476301126.89480-0.318802.662001.95070HepG2IGF2BP1
NEO1ENSG00000067141.12677.41510989.76170-0.547004.345103.51590HepG2IGF2BP2
NEO1ENSG00000067141.121434.91560928.716800.627602.417401.50590HepG2IGF2BP3
NEO1ENSG00000067141.12648.710501049.89510-0.694606.705005.69720HepG2MAGOH
NEO1ENSG00000067141.121737.895301178.444400.560407.327206.06960HepG2MSI2
NEO1ENSG00000067141.121263.55430989.518900.352603.113701.82220HepG2NAA15
NEO1ENSG00000067141.12302.65000716.26030-1.242809.970008.25020HepG2PABPC1
NEO1ENSG00000067141.121283.49400962.533600.415103.007602.25660HepG2PABPC4
NEO1ENSG00000067141.121307.629901012.473900.369004.619203.55740HepG2PARN
NEO1ENSG00000067141.12743.187101131.51980-0.606503.888702.66400HepG2PCBP2
NEO1ENSG00000067141.12910.524301259.11560-0.467606.918105.75920HepG2PRPF4
NEO1ENSG00000067141.12750.43550552.467900.441702.297001.55790HepG2PRPF8
NEO1ENSG00000067141.121806.559401294.179300.4811011.013509.99550HepG2PUM1
NEO1ENSG00000067141.12430.470601091.90110-1.3429012.0006010.60990HepG2RAVER1
NEO1ENSG00000067141.121360.294201639.67110-0.269502.354801.55700HepG2RBM15
NEO1ENSG00000067141.121308.411501070.307700.289703.077802.43230HepG2RECQL
NEO1ENSG00000067141.12918.076101232.81010-0.425303.825603.04270HepG2RPLP0
NEO1ENSG00000067141.12680.156601072.65590-0.657204.249203.08250HepG2RPS10
NEO1ENSG00000067141.121056.03250742.749300.507605.110904.30530HepG2RPS19
NEO1ENSG00000067141.122000.93330870.257001.201104.364802.57520HepG2SF1
NEO1ENSG00000067141.121220.731701062.280500.200501.940501.38640HepG2SMN1
NEO1ENSG00000067141.12940.728401124.32950-0.257202.411701.75920HepG2SRSF7
NEO1ENSG00000067141.12640.82330912.90020-0.510505.956405.20230HepG2SRSF9
NEO1ENSG00000067141.121079.247601398.93850-0.374305.230804.56930HepG2SSB
NEO1ENSG00000067141.121585.862601368.972400.212102.270401.69700HepG2SUCLG1
NEO1ENSG00000067141.12880.533801283.09810-0.543203.687602.13790HepG2SUGP2
NEO1ENSG00000067141.12263.31160713.21540-1.4376014.5502013.21030HepG2SUPV3L1
NEO1ENSG00000067141.121356.050901008.628400.426905.366004.62800HepG2TAF15
NEO1ENSG00000067141.121950.320301258.350300.632108.178607.01930HepG2TARDBP
NEO1ENSG00000067141.121566.736301245.518000.330902.457001.86250HepG2U2AF1
NEO1ENSG00000067141.121575.58130904.814700.800102.190601.32480HepG2U2AF2
NEO1ENSG00000067141.12288.31950421.26310-0.547103.653402.78260HepG2UCHL5
NEO1ENSG00000067141.12488.96520702.08470-0.521903.933403.07650HepG2XRN2
NEO1ENSG00000067141.12677.696101242.57260-0.8746022.9172021.32280HepG2ZC3H8
NEO1ENSG00000067141.121205.706001516.15550-0.330505.167704.47890HepG2ZNF622
NEO1ENSG00000067141.1293.5484052.162700.842602.491001.44420K562CPEB4
NEO1ENSG00000067141.12185.7803028.597302.6995023.6528021.89330K562EIF2S2
NEO1ENSG00000067141.1255.6672020.354101.451403.211702.57500K562HNRNPC
NEO1ENSG00000067141.1255.1661019.667501.487903.386901.81170K562LARP7
NEO1ENSG00000067141.12107.4209056.699100.921802.284601.41050K562PUM2
NEO1ENSG00000067141.12105.4822042.661401.305905.320704.17330K562SYNCRIP
NEO1ENSG00000067141.1289.0961046.333200.943202.517101.37550K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NEO1 is not available on ENCORE database.





6 RBPs can affect the splicing of NEO1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENEO1ENSG00000067141.12chr15+735857947358588973581486735815797359068873590952-0.097000.000870.01825excludedHepG2U2AF1
SENEO1ENSG00000067141.12chr15+735704717357054073566151735663467357530473575452-0.349000.001480.01964excludedHepG2U2AF2
SENEO1ENSG00000067141.12chr15+7358573073585889735814867358157973590688735909520.100000.000010.00110includedHepG2SFPQ
SENEO1ENSG00000067141.12chr15+735857307358588973581486735815797359068873590952-0.087000.000020.00114excludedHepG2SF3A3
SENEO1ENSG00000067141.12chr15+735857307358588973581486735815797359068873590952-0.142000.000100.00686excludedHepG2HNRNPU
SENEO1ENSG00000067141.12chr15+735857307358588973581486735815797359068873590952-0.184000.000020.00164excludedHepG2HNRNPC
A3SSNEO1ENSG00000067141.12chr15+7352862773528847735286877352884773470647734707680.305000.000000.00000longerHepG2U2AF1
A3SSNEO1ENSG00000067141.12chr15+7356235073562574735623987356257473558656735587520.293000.000000.00005longerHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NEO1 is not avaliable on ENCORE database.