RRP12

General Information

Gene Name       : RRP12
Gene ID             : ENSG00000052749.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RRP12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RRP12ENSG00000052749.133.2311.217.22ENCSR000AEF
HepG2RRP12ENSG00000052749.1326.9013.6720.29ENCSR985KAT
K562RRP12ENSG00000052749.1327.0820.2823.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RRP12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RRP12 RNA is bound by 13 proteins.  







eCLIP assay for RRP12 is not avaliable on ENCORE database.





13 proteins are bound to RRP12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr109913254799132633-CDS,intron-Distal,intron-Proximal3.735955.30069HepG2AQR
chr109912361099123663-CDS,intron-Distal,intron-Proximal3.719843.02919K562GRWD1
chr109915024499150290-CDS,intron-Distal4.258643.49332HepG2PPIG
chr109911829099118370-CDS,intron-Distal,intron-Proximal3.580295.10924K562ZNF800
chr109913179399131856-CDS,intron-Distal,intron-Proximal3.267423.69193HepG2PRPF8
chr109912665099126723-CDS,intron-Distal,intron-Proximal4.981255.59044HepG2SF3B4
chr109913900099139075-CDS,intron-Distal,intron-Proximal5.107708.26505HepG2PRPF8
chr109913281499132892-CDS,intron-Distal,intron-Proximal4.176674.15726HepG2G3BP1
chr109912030799120374-CDS,intron-Distal3.931853.22245K562GRWD1
chr109914800799148078-CDS,intron-Distal,intron-Proximal3.705185.86107HepG2PPIG
chr109915598699156054-CDS,intron-Distal3.200546.27819HepG2PPIG
chr109912030299120372-CDS,intron-Distal,intron-Proximal3.289225.29927K562ZNF800
chr109914573699145750-CDS,intron-Distal4.120223.82843HepG2PPIG
chr109911691699116955-CDS,intron-Distal3.906383.02457HepG2BCLAF1
chr109912622499126330-CDS,intron-Distal,intron-Proximal3.367458.21513K562ZNF800
chr109913361499133654-CDS,intron-Distal,intron-Proximal3.664073.19539K562YBX3
chr109914493099144974-CDS,intron-Distal3.142983.99124HepG2PPIG
chr109913068299130801-CDS,intron-Distal3.620226.54857HepG2PPIG
chr109912586399125895-CDS,intron-Distal,intron-Proximal3.416744.06757K562UCHL5
chr109913254499132596-CDS,intron-Distal,intron-Proximal6.0273113.68711K562AQR
chr109912030099120375-CDS,intron-Distal,intron-Proximal4.892296.96356K562UCHL5
chr109911686199116942-CDS,intron-Distal,intron-Proximal4.091503.79347HepG2GRWD1
chr109911688299116930-CDS,intron-Distal4.715895.87377HepG2PPIG
chr109912360499123653-CDS,intron-Distal,intron-Proximal4.436844.43680K562ZNF622
chr109912631899126379-CDS,intron-Distal,intron-Proximal4.632805.50697K562UCHL5
chr109912919999129306-CDS,intron-Distal4.548264.42734K562UCHL5
chr109912620999126268-CDS,intron-Distal3.381554.06757K562UCHL5
chr109913252899132597-CDS,intron-Distal,intron-Proximal5.013025.01842HepG2PRPF8
chr109915013099150180-intron-Distal,intron-Proximal4.681374.48002K562AQR
chr109915029699150348-intron-Distal,intron-Proximal4.920757.97588HepG2SF3B4
chr109913279099132802-intron-Distal,intron-Proximal3.544786.28932HepG2AQR
chr109913278599132803-intron-Distal,intron-Proximal5.9161112.10660K562AQR
chr109913163499131728-intron-Distal5.245667.58908K562PRPF8
chr109913365299133714-intron-Distal,intron-Proximal5.878227.02785HepG2SF3A3
chr109913275699132790-intron-Distal,intron-Proximal4.468788.64310HepG2AQR
chr109913163999131781-intron-Distal,intron-Proximal5.9456311.05222HepG2EFTUD2
chr109911883299118866-intron-Distal,intron-Proximal4.997653.56713HepG2SF3B4
chr109913278599132803-intron-Distal,intron-Proximal4.464658.77485HepG2PRPF8
chr109913272499132785-intron-Distal,intron-Proximal3.8739111.40635HepG2PRPF8
chr109913270399132785-intron-Distal,intron-Proximal6.8402523.91975K562AQR
chr109911877999118865-intron-Distal,intron-Proximal5.287905.90023K562SF3B4
chr109911877199118832-intron-Distal,intron-Proximal5.208207.19196HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RRP12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RRP12 is not available on ENCORE database.

  • 97 RBPs can affect the levels of RRP12.  








The Knockdown/knockout RNA-Seq assay for RRP12 is not available on ENCORE database.





97 RBPs can affect the gene expression of RRP12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RRP12ENSG00000052749.9869.29350723.478500.264802.338801.77200HepG2ACO1
RRP12ENSG00000052749.92103.25620908.864601.210407.519406.68710HepG2AKAP1
RRP12ENSG00000052749.91492.878801211.021300.301803.509102.75270HepG2AUH
RRP12ENSG00000052749.9446.92910607.06570-0.441802.736401.84150HepG2BCLAF1
RRP12ENSG00000052749.91679.42140768.621401.1275022.4903021.04430HepG2BOP1
RRP12ENSG00000052749.9444.08030589.94920-0.409802.853701.60300HepG2BUD13
RRP12ENSG00000052749.9627.92280872.36020-0.474302.716901.75260HepG2CCAR1
RRP12ENSG00000052749.9922.65830723.292700.351104.023803.25060HepG2CKAP4
RRP12ENSG00000052749.9512.58650705.62210-0.461103.277602.53530HepG2CPSF6
RRP12ENSG00000052749.91103.09840704.342300.6471011.1697010.04770HepG2CELF1
RRP12ENSG00000052749.9891.45810757.206600.235402.278801.59700HepG2DAZAP1
RRP12ENSG00000052749.9362.01510501.37450-0.469803.007602.30300HepG2DDX21
RRP12ENSG00000052749.9351.36280490.60470-0.481603.255202.26160HepG2DDX24
RRP12ENSG00000052749.9728.98690943.03330-0.371402.657001.38400HepG2DDX47
RRP12ENSG00000052749.9986.18360687.038700.521403.025902.22330HepG2DDX55
RRP12ENSG00000052749.9493.74360692.16550-0.487404.910104.05540HepG2DKC1
RRP12ENSG00000052749.9521.35760718.82210-0.463401.929601.42430HepG2EIF2S1
RRP12ENSG00000052749.9793.57050597.328000.409702.988501.76690HepG2EIF2S2
RRP12ENSG00000052749.9615.54940412.887500.576003.459102.45480HepG2EIF3D
RRP12ENSG00000052749.9610.02020473.448000.365602.382401.37920HepG2EIF3G
RRP12ENSG00000052749.91507.27260773.603800.962208.809407.61810HepG2EIF4B
RRP12ENSG00000052749.91213.14830747.146500.6992014.0493012.45300HepG2EIF4G1
RRP12ENSG00000052749.9284.58820410.54140-0.528702.930402.26720HepG2HNRNPA1
RRP12ENSG00000052749.91448.98940753.555900.943209.794208.54890HepG2HNRNPK
RRP12ENSG00000052749.9429.64250763.30430-0.829108.379007.34870HepG2HNRNPLL
RRP12ENSG00000052749.9717.40050548.586800.387002.649301.71650HepG2HNRNPM
RRP12ENSG00000052749.9585.41330453.642900.367803.093702.45510HepG2HNRNPU
RRP12ENSG00000052749.91163.78580755.711000.622805.649404.71710HepG2IGF2BP2
RRP12ENSG00000052749.9511.67620806.52740-0.656503.999102.48950HepG2KRR1
RRP12ENSG00000052749.92317.57470806.532601.5227030.0832028.18080HepG2MATR3
RRP12ENSG00000052749.9348.33400778.55640-1.160309.484907.65960HepG2MTPAP
RRP12ENSG00000052749.9986.43180750.851700.393604.143103.20960HepG2NOL12
RRP12ENSG00000052749.9466.17100676.84350-0.538003.955503.06640HepG2NSUN2
RRP12ENSG00000052749.9994.67110765.788600.377204.228203.50560HepG2PCBP1
RRP12ENSG00000052749.91619.83000760.948801.0899015.6243014.45180HepG2PUM1
RRP12ENSG00000052749.91381.10750760.365900.861008.711307.55280HepG2PUM2
RRP12ENSG00000052749.9478.89090736.90560-0.621808.753507.75990HepG2PUS1
RRP12ENSG00000052749.91024.89250806.206700.346202.798001.93760HepG2RBM15
RRP12ENSG00000052749.92305.618601162.171900.9882025.3792024.13030HepG2RBM22
RRP12ENSG00000052749.91190.91670961.509700.308601.980201.39080HepG2RPLP0
RRP12ENSG00000052749.9592.72640401.828200.560704.344603.59130HepG2RPS19
RRP12ENSG00000052749.9473.30210762.13010-0.687301.998801.31880HepG2RPS3A
RRP12ENSG00000052749.9831.62020524.039400.666104.746303.74830HepG2RRP9
RRP12ENSG00000052749.91354.01020855.200700.662805.008104.08200HepG2SF3A3
RRP12ENSG00000052749.9645.72680471.100100.454804.851704.03840HepG2SMN1
RRP12ENSG00000052749.9886.78240466.295700.927204.707603.42740HepG2SMNDC1
RRP12ENSG00000052749.91333.42390707.778800.9137023.9789022.39870HepG2SRSF5
RRP12ENSG00000052749.9793.033101139.60840-0.523108.338307.54140HepG2SSB
RRP12ENSG00000052749.91383.21450804.894800.7811020.5870019.14020HepG2SUCLG1
RRP12ENSG00000052749.9508.00670744.08870-0.550604.491203.59590HepG2TARDBP
RRP12ENSG00000052749.9759.61190444.742100.7722012.7626011.67740HepG2TRIM56
RRP12ENSG00000052749.91128.39240741.351500.605904.137003.10410HepG2UBE2L3
RRP12ENSG00000052749.9728.32410403.942400.850308.253206.94160HepG2UCHL5
RRP12ENSG00000052749.91603.79330732.238501.1310038.1426036.29450HepG2UTP3
RRP12ENSG00000052749.91119.95160834.131400.425006.534305.78720HepG2ZNF622
RRP12ENSG00000052749.91091.59360790.426400.465604.174202.68910K562AARS
RRP12ENSG00000052749.91139.58190921.342700.306601.970701.41710K562AKAP8L
RRP12ENSG00000052749.92201.038501704.015200.369103.770802.29250K562APOBEC3C
RRP12ENSG00000052749.9972.212801228.73920-0.337803.183601.55700K562CEBPZ
RRP12ENSG00000052749.9505.25210676.29440-0.420603.170502.32970K562CPSF6
RRP12ENSG00000052749.92817.593501471.845000.9367034.2741032.25520K562DDX47
RRP12ENSG00000052749.91326.07090917.732600.530904.893103.66310K562EFTUD2
RRP12ENSG00000052749.91301.967501609.40400-0.305803.425102.63790K562EIF2S2
RRP12ENSG00000052749.91299.72680648.879301.002108.062406.31340K562EIF3A
RRP12ENSG00000052749.91532.48320982.392900.641403.522802.34210K562EIF3D
RRP12ENSG00000052749.91087.08080449.919901.2726028.0321025.46890K562EIF3G
RRP12ENSG00000052749.9838.00670656.372300.352302.448701.67640K562EIF4A3
RRP12ENSG00000052749.9667.013601137.60100-0.770209.958808.23920K562FIP1L1
RRP12ENSG00000052749.9375.24480688.15400-0.874909.396707.77150K562FMR1
RRP12ENSG00000052749.9419.07440583.29020-0.477003.013902.05590K562FTO
RRP12ENSG00000052749.91410.33190682.597801.0468026.9449025.17960K562FXR1
RRP12ENSG00000052749.980.91240278.55370-1.7835014.7111012.78230K562G3BP2
RRP12ENSG00000052749.91707.118801330.100500.359903.441802.24630K562HNRNPL
RRP12ENSG00000052749.91041.880101542.33740-0.565906.127904.95500K562HSPD1
RRP12ENSG00000052749.9378.72840551.37230-0.541902.823101.87850K562KRR1
RRP12ENSG00000052749.91004.15000566.830000.824906.219304.93840K562MAGOH
RRP12ENSG00000052749.91148.18400565.582601.0214012.002709.95670K562MATR3
RRP12ENSG00000052749.9836.58590504.221300.730403.988702.80900K562PCBP2
RRP12ENSG00000052749.9895.536801567.08800-0.807309.822008.25940K562PCBP3
RRP12ENSG00000052749.9627.73520844.25820-0.427503.196601.64670K562PHF6
RRP12ENSG00000052749.9783.290501202.02150-0.617808.283806.92230K562POLR2G
RRP12ENSG00000052749.91047.545301291.41040-0.301902.079101.37130K562PPIG
RRP12ENSG00000052749.91490.87630893.065100.739208.965707.61480K562PRPF8
RRP12ENSG00000052749.9599.15020775.29220-0.371802.611401.73860K562PSIP1
RRP12ENSG00000052749.91190.44470550.758701.1119012.0266010.69530K562PTBP1
RRP12ENSG00000052749.9784.54610514.735000.607902.853301.45210K562RBM34
RRP12ENSG00000052749.9950.76910555.466800.775302.586301.53390K562NELFE
RRP12ENSG00000052749.91673.45470909.527200.8795010.341808.73550K562RPS19
RRP12ENSG00000052749.9768.44440397.036800.952605.249103.80910K562RPS3
RRP12ENSG00000052749.91523.599001070.993700.508405.893704.31530K562SAFB
RRP12ENSG00000052749.9461.97380614.12360-0.410702.186901.33300K562SF3B1
RRP12ENSG00000052749.9470.36890289.637600.699406.569605.21270K562SF3B4
RRP12ENSG00000052749.9279.33430413.13900-0.564603.273301.51850K562SND1
RRP12ENSG00000052749.9931.53890539.999000.786606.022504.98800K562SRSF1
RRP12ENSG00000052749.91017.240301260.42710-0.309303.335802.04200K562SRSF7
RRP12ENSG00000052749.9292.70780464.10050-0.665005.856003.86610K562SSB
RRP12ENSG00000052749.9979.224301492.59620-0.608106.865704.67010K562SSRP1
RRP12ENSG00000052749.91009.169001365.16690-0.435903.432702.00890K562STAU1
RRP12ENSG00000052749.91516.667101205.642900.331003.130302.25660K562SYNCRIP
RRP12ENSG00000052749.9141.75300273.43260-0.947804.208002.26140K562TAF15
RRP12ENSG00000052749.9762.99690546.359300.481702.006401.39780K562TARDBP
RRP12ENSG00000052749.9411.12140745.68590-0.859008.574806.85490K562TIAL1
RRP12ENSG00000052749.91448.497802020.83860-0.480409.035206.71490K562TROVE2
RRP12ENSG00000052749.9158.37770278.85330-0.816105.689104.53690K562U2AF2
RRP12ENSG00000052749.9662.41120914.99760-0.466003.722402.52480K562UCHL5
RRP12ENSG00000052749.91125.062401496.54740-0.411606.532105.48180K562UPF1
RRP12ENSG00000052749.9853.486801280.55250-0.585307.393005.92030K562WDR3
RRP12ENSG00000052749.91380.531101798.06990-0.381202.284101.51190K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RRP12 is not available on ENCORE database.





4 RBPs can affect the splicing of RRP12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERRP12ENSG00000052749.9chr10-991267979912688999126498991266669912918199129339-0.127000.000120.00204excludedK562AQR
A3SSRRP12ENSG00000052749.9chr10-9913182999131960991318299913192399132492991326630.081000.002120.01354longerK562AQR
A3SSRRP12ENSG00000052749.9chr10-9911829399118402991182939911837699118699991187670.104000.000000.00000longerK562AQR
A3SSRRP12ENSG00000052749.9chr10-9912992399130085991299239913003199130211991303170.092000.001260.00855longerK562AQR
A3SSRRP12ENSG00000052749.9chr10-9913249299132663991324929913256099132802991329570.128000.000860.00610longerK562AQR
RIRRP12ENSG00000052749.9chr10-9913067999131923991306799913083899131829991319230.134000.001150.00842includedK562PUS1
RIRRP12ENSG00000052749.9chr10-9913067999131923991306799913083899131829991319230.144000.000060.00093includedK562AKAP8L
RIRRP12ENSG00000052749.9chr10-9911829399118767991182939911837699118699991187670.133000.000530.01323includedK562U2AF1
RIRRP12ENSG00000052749.9chr10-9911829399118767991182939911837699118699991187670.078000.000000.00000includedK562AQR
RIRRP12ENSG00000052749.9chr10-9913067999131923991306799913083899131829991319230.206000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RRP12 is not avaliable on ENCORE database.