TBC1D1

General Information

Gene Name       : TBC1D1
Gene ID             : ENSG00000065882.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TBC1D1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBC1D1ENSG00000065882.1531.1741.4436.30ENCSR000AEF
HepG2TBC1D1ENSG00000065882.1536.0633.5634.81ENCSR985KAT
K562TBC1D1ENSG00000065882.156.505.856.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBC1D1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBC1D1 RNA is bound by 5 proteins.  







eCLIP assay for TBC1D1 is not avaliable on ENCORE database.





5 proteins are bound to TBC1D1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr43810461538104659+3'-UTR,CDS,intron-Proximal4.528508.30847HepG2LIN28B
chr43803726038037322+3'-UTR,CDS,intron-Proximal4.230926.23296HepG2BCLAF1
chr43804606938046111+3'-UTR,CDS,intron-Distal4.715075.37137HepG2BCLAF1
chr43804743438047474+3'-UTR,CDS,intron-Distal,intron-Proximal4.881366.04243HepG2BCLAF1
chr43804600738046069+3'-UTR,CDS,intron-Distal3.050896.09950HepG2BCLAF1
chr43809767538097715+3'-UTR,CDS,intron-Proximal4.422593.89826HepG2BCLAF1
chr43813484438134881+3'-UTR,CDS,intron-Proximal4.676664.70478HepG2BCLAF1
chr43809758638097714+3'-UTR,CDS,intron-Proximal3.319344.02291HepG2GRWD1
chr43802321438023267+3'-UTR,CDS4.554104.78529HepG2BCLAF1
chr43810461538104679+3'-UTR,CDS,intron-Proximal3.308923.29600K562LIN28B
chr43809757338097655+3'-UTR,CDS3.097845.00751HepG2BCLAF1
chr43797900537979103+5'-UTR,intron-Distal4.274207.51958HepG2DDX3X
chr43802004938020066+CDS,intron-Distal,intron-Proximal3.928003.04123K562LIN28B
chr43804862038048676+intron-Distal3.933163.50031HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBC1D1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBC1D1 is not available on ENCORE database.

  • 91 RBPs can affect the levels of TBC1D1.  








The Knockdown/knockout RNA-Seq assay for TBC1D1 is not available on ENCORE database.





91 RBPs can affect the gene expression of TBC1D1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBC1D1ENSG00000065882.11928.546901232.36450-0.408402.850901.89590HepG2ABCF1
TBC1D1ENSG00000065882.111251.108501508.60500-0.270002.793202.10460HepG2AUH
TBC1D1ENSG00000065882.11401.33920624.82400-0.638604.586103.45260HepG2BCLAF1
TBC1D1ENSG00000065882.11432.54160966.74420-1.1603018.5422017.19650HepG2BOP1
TBC1D1ENSG00000065882.11793.970401026.70490-0.370903.320302.48530HepG2CALR
TBC1D1ENSG00000065882.11728.21920966.03390-0.407705.366304.49620HepG2CKAP4
TBC1D1ENSG00000065882.11898.617001259.08150-0.486602.494901.77230HepG2CNOT7
TBC1D1ENSG00000065882.11691.30010887.52570-0.360502.249301.62060HepG2CPSF6
TBC1D1ENSG00000065882.11700.18850889.73630-0.345603.055101.98340HepG2YBX3
TBC1D1ENSG00000065882.111106.106101310.47480-0.244602.756902.01640HepG2DAZAP1
TBC1D1ENSG00000065882.11524.99670865.48930-0.721208.232307.12760HepG2DDX21
TBC1D1ENSG00000065882.11566.70580846.59780-0.579106.139304.78530HepG2DDX24
TBC1D1ENSG00000065882.11780.632601357.04400-0.797809.194208.11060HepG2DDX3X
TBC1D1ENSG00000065882.111365.550401805.39440-0.402803.827602.31660HepG2DDX47
TBC1D1ENSG00000065882.11758.966401139.15070-0.585905.880804.46430HepG2DDX5
TBC1D1ENSG00000065882.111489.352801165.742100.353302.126901.57800HepG2DDX6
TBC1D1ENSG00000065882.11645.90750842.63770-0.383602.808401.81800HepG2DHX30
TBC1D1ENSG00000065882.11648.13380924.39130-0.512206.483905.52950HepG2DKC1
TBC1D1ENSG00000065882.11616.11080865.94080-0.491107.006006.03470HepG2DNAJC2
TBC1D1ENSG00000065882.11750.87840970.77700-0.370602.328301.48030HepG2EEF2
TBC1D1ENSG00000065882.11850.561501120.64300-0.397802.687102.10280HepG2EIF2S1
TBC1D1ENSG00000065882.11520.85080788.07620-0.597504.668903.51820HepG2EIF3D
TBC1D1ENSG00000065882.11688.144701238.43590-0.847709.163108.00740HepG2EIF4A3
TBC1D1ENSG00000065882.11440.743901205.80330-1.4520018.5530016.88230HepG2EIF4B
TBC1D1ENSG00000065882.111038.184701732.10630-0.7385017.4287016.13130HepG2ETF1
TBC1D1ENSG00000065882.11561.569701159.13000-1.0455013.6621012.24710HepG2G3BP1
TBC1D1ENSG00000065882.11391.56880882.02210-1.1715018.3304016.90540HepG2HNRNPA1
TBC1D1ENSG00000065882.11545.55640981.08760-0.8467010.785709.49470HepG2HNRNPC
TBC1D1ENSG00000065882.111427.549601193.753100.257903.022802.32070HepG2HNRNPL
TBC1D1ENSG00000065882.11629.57670960.12470-0.608805.401804.55250HepG2HNRNPLL
TBC1D1ENSG00000065882.11723.723501178.22670-0.703107.289906.24690HepG2IGF2BP2
TBC1D1ENSG00000065882.11781.87640995.52260-0.348504.237103.34900HepG2ILF2
TBC1D1ENSG00000065882.11847.165201199.42990-0.501603.426202.07370HepG2KHDRBS1
TBC1D1ENSG00000065882.11884.791401280.12450-0.532903.564302.14180HepG2KRR1
TBC1D1ENSG00000065882.111202.965301730.25900-0.524403.830302.85040HepG2LARP4
TBC1D1ENSG00000065882.11636.107201249.98550-0.9746012.7929011.42040HepG2MAGOH
TBC1D1ENSG00000065882.11998.986801256.97840-0.331401.865701.34230HepG2MATR3
TBC1D1ENSG00000065882.11749.220201007.27600-0.427003.664602.73580HepG2MSI2
TBC1D1ENSG00000065882.11539.001701286.58470-1.2552019.5633017.97650HepG2NCBP2
TBC1D1ENSG00000065882.11795.690701214.02310-0.609504.216902.45630HepG2NKRF
TBC1D1ENSG00000065882.11433.75780649.31360-0.582002.730901.64530HepG2NONO
TBC1D1ENSG00000065882.11707.617901150.70770-0.701504.117603.01860HepG2PABPC1
TBC1D1ENSG00000065882.11793.207401145.77590-0.530604.345403.45380HepG2PABPC4
TBC1D1ENSG00000065882.11631.41350970.66910-0.620403.908102.68150HepG2PCBP2
TBC1D1ENSG00000065882.111254.463401036.516300.275202.711401.94440HepG2PRPF4
TBC1D1ENSG00000065882.11854.221201240.44050-0.538205.980105.14760HepG2PUF60
TBC1D1ENSG00000065882.11938.851301316.77070-0.488009.302308.34970HepG2PUM1
TBC1D1ENSG00000065882.11722.69480984.12930-0.445505.982005.13810HepG2PUS1
TBC1D1ENSG00000065882.111402.312901176.082700.253702.368201.79170HepG2RECQL
TBC1D1ENSG00000065882.11503.56250920.25220-0.869906.666205.24770HepG2RPS10
TBC1D1ENSG00000065882.11470.47920766.81470-0.704707.552906.59780HepG2RPS19
TBC1D1ENSG00000065882.11676.69670975.64250-0.527804.409803.41220HepG2RPS2
TBC1D1ENSG00000065882.11711.428001264.02330-0.829207.541506.23700HepG2RPS3A
TBC1D1ENSG00000065882.11880.629101190.30600-0.434702.700801.40500HepG2SART3
TBC1D1ENSG00000065882.11546.95720769.64670-0.492803.551102.48250HepG2SERBP1
TBC1D1ENSG00000065882.11699.330801123.68010-0.684205.500904.53090HepG2SF3A3
TBC1D1ENSG00000065882.11841.243601012.14590-0.266802.764002.12000HepG2SMN1
TBC1D1ENSG00000065882.11438.034401057.41530-1.271408.964507.56380HepG2SNRNP70
TBC1D1ENSG00000065882.11632.971701635.13120-1.3692055.0127053.51970HepG2SRFBP1
TBC1D1ENSG00000065882.11889.434401233.14060-0.471406.975206.30720HepG2SRSF1
TBC1D1ENSG00000065882.11996.841501224.74040-0.297003.111302.45290HepG2SRSF5
TBC1D1ENSG00000065882.111180.439101003.190900.234602.126001.62920HepG2SRSF9
TBC1D1ENSG00000065882.11752.187901419.66440-0.9164025.0645023.86560HepG2SSB
TBC1D1ENSG00000065882.11531.11020831.30330-0.646404.217902.71690HepG2STAU1
TBC1D1ENSG00000065882.11430.45920703.83250-0.709405.478404.57780HepG2SUPV3L1
TBC1D1ENSG00000065882.111603.973401108.283300.533208.357907.46800HepG2TAF15
TBC1D1ENSG00000065882.11612.01520935.81050-0.612605.898204.89740HepG2TARDBP
TBC1D1ENSG00000065882.11695.443501253.76720-0.850304.386603.06670HepG2TBRG4
TBC1D1ENSG00000065882.11555.85520947.00310-0.7687011.4767010.58160HepG2TIAL1
TBC1D1ENSG00000065882.11556.967401064.59110-0.9346011.9832010.64680HepG2U2AF1
TBC1D1ENSG00000065882.11573.584801122.05360-0.968102.956701.93350HepG2U2AF2
TBC1D1ENSG00000065882.11677.877901132.17290-0.740005.820804.23230HepG2XPO5
TBC1D1ENSG00000065882.11764.821001022.91800-0.419505.671204.76230HepG2ZC3H8
TBC1D1ENSG00000065882.11323.822001095.99460-1.7590070.9560069.16250HepG2ZNF622
TBC1D1ENSG00000065882.11664.11100426.412300.639107.140906.29230K562AGGF1
TBC1D1ENSG00000065882.11198.73260408.49890-1.039508.208807.28640K562AQR
TBC1D1ENSG00000065882.1180.20010198.51380-1.307607.641506.16510K562BOP1
TBC1D1ENSG00000065882.11285.63930509.59270-0.835208.693406.58800K562CCDC124
TBC1D1ENSG00000065882.11508.44440391.962200.375302.614301.53970K562CPEB4
TBC1D1ENSG00000065882.11223.67880405.56050-0.858508.902707.81630K562DDX47
TBC1D1ENSG00000065882.1192.20910187.29660-1.022304.525102.85190K562EEF2
TBC1D1ENSG00000065882.1169.60630152.27650-1.129403.782402.58470K562EIF3A
TBC1D1ENSG00000065882.1181.75350193.73350-1.244706.999305.24010K562EIF3D
TBC1D1ENSG00000065882.11118.89720205.49130-0.789404.324203.34020K562EIF3G
TBC1D1ENSG00000065882.11166.71640251.40650-0.592603.023702.16800K562EIF4A3
TBC1D1ENSG00000065882.11301.44160482.39300-0.678306.747105.30150K562EIF4G2
TBC1D1ENSG00000065882.11152.23540261.45170-0.780205.118104.33020K562FXR1
TBC1D1ENSG00000065882.11129.97790201.52800-0.632702.657701.87760K562GPKOW
TBC1D1ENSG00000065882.11196.23500283.51730-0.530902.921201.81660K562HNRNPA1
TBC1D1ENSG00000065882.11118.01610233.54790-0.984705.806904.97300K562HNRNPC
TBC1D1ENSG00000065882.11102.99660172.07830-0.740502.431101.56250K562KRR1
TBC1D1ENSG00000065882.11692.26910527.506900.392002.890801.95700K562MBNL1
TBC1D1ENSG00000065882.11177.34800265.53900-0.582302.858401.86490K562PCBP2
TBC1D1ENSG00000065882.11202.11870289.97070-0.520702.954302.27030K562PTBP1
TBC1D1ENSG00000065882.11654.67140428.743100.610606.274105.40560K562RBM15
TBC1D1ENSG00000065882.11117.87490191.06700-0.696803.149102.08480K562RCC2
TBC1D1ENSG00000065882.11206.25370292.57400-0.504402.485801.45810K562NELFE
TBC1D1ENSG00000065882.11116.86370179.35760-0.618002.061501.36150K562RPS19
TBC1D1ENSG00000065882.11196.18980292.37060-0.575502.451201.51470K562RPS3
TBC1D1ENSG00000065882.11238.05930371.75960-0.643002.632301.83630K562SF3A3
TBC1D1ENSG00000065882.11182.65430284.27450-0.638203.633002.82880K562SRSF1
TBC1D1ENSG00000065882.11621.38160459.206100.436203.137901.53810K562SUCLG1
TBC1D1ENSG00000065882.11192.36190287.69020-0.580703.035802.29410K562TARDBP
TBC1D1ENSG00000065882.11292.69320399.42090-0.448502.464801.78540K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBC1D1 is not available on ENCORE database.





9 RBPs can affect the splicing of TBC1D1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETBC1D1ENSG00000065882.11chr4+3805351938053681380512383805151938055819380559590.086000.000000.00112includedHepG2QKI
SETBC1D1ENSG00000065882.11chr4+3805351938053681380512383805151938055819380559590.185000.000010.00139includedHepG2SRSF7
SETBC1D1ENSG00000065882.11chr4+3805472638054846380512383805151938055819380559590.288000.000000.00000includedHepG2PTBP1
SETBC1D1ENSG00000065882.11chr4+3805472638054846380512383805151938055819380559590.089000.000220.01293includedHepG2MATR3
SETBC1D1ENSG00000065882.11chr4+3806224038062279380558193805595938091552380917380.082000.003020.09511includedHepG2MATR3
SETBC1D1ENSG00000065882.11chr4+3805351938053681380512383805151938055819380559590.094000.000190.02178includedHepG2DDX6
SETBC1D1ENSG00000065882.11chr4+3805472638054846380512383805151938055819380559590.076000.000030.00121includedHepG2SRSF1
SETBC1D1ENSG00000065882.11chr4+3805351938053681380512383805151938055819380559590.060000.000320.01873includedHepG2SF3B4
SETBC1D1ENSG00000065882.11chr4+3805351938053681380512383805151938055819380559590.053000.000890.05567includedHepG2SRSF9
SETBC1D1ENSG00000065882.11chr4+3805472638054846380512383805151938055819380559590.310000.000040.00316includedK562PTBP1
MXETBC1D1ENSG00000065882.11chr4+3802940838029500380372083803731938023206380233393804598238046111-0.151000.001970.014422includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBC1D1 is not avaliable on ENCORE database.