SMC1A

General Information

Gene Name : SMC1A
Gene ID : ENSG00000072501.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SMC1A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SMC1A	ENSG00000072501.17	84.72	87.32	86.02	ENCSR000AEF
HepG2	SMC1A	ENSG00000072501.17	56.27	60.78	58.53	ENCSR985KAT
K562	SMC1A	ENSG00000072501.17	90.56	84.93	87.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SMC1A is not avaliable on ENCORE database.

Proteins bound to RNA

SMC1A RNA is bound by 43 proteins.

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eCLIP assay for SMC1A is not avaliable on ENCORE database.

43 proteins are bound to SMC1A RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	53439849	53439953	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.63997	72.34591	K562	UCHL5
chrX	53430511	53430589	-	CDS,intron-Distal	4.54796	56.32195	K562	UCHL5
chrX	53438771	53438845	-	CDS,intron-Distal	6.20820	52.32078	K562	UCHL5
chrX	53426617	53426652	-	CDS,intron-Distal	4.85724	51.19952	K562	UCHL5
chrX	53406596	53406703	-	3'-UTR,intron-Distal	5.18885	49.43712	K562	TARDBP
chrX	53432706	53432841	-	CDS,intron-Distal	4.92213	46.14335	K562	ZNF622
chrX	53436351	53436398	-	CDS,intron-Distal,intron-Proximal	3.58885	44.99607	K562	PUM1
chrX	53436356	53436411	-	CDS,intron-Distal	5.44934	44.79931	K562	UCHL5
chrX	53431990	53432081	-	CDS,intron-Distal,intron-Proximal	4.95683	41.39687	K562	UCHL5
chrX	53426565	53426617	-	CDS,intron-Distal	4.90244	39.17826	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 322 entries

eCLIP assay for SMC1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SMC1A is not available on ENCORE database.
145 RBPs can affect the levels of SMC1A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SMC1A is not available on ENCORE database.

145 RBPs can affect the gene expression of SMC1A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SMC1A	ENSG00000072501.13	1753.00800	4100.38480	-1.22590	92.20730	90.24810	HepG2	ZNF622
SMC1A	ENSG00000072501.13	2104.47310	4213.45810	-1.00150	53.39550	51.92080	HepG2	SRFBP1
SMC1A	ENSG00000072501.13	1090.62680	2274.86650	-1.06060	50.18930	47.66090	HepG2	DNAJC2
SMC1A	ENSG00000072501.13	1621.76960	2953.60020	-0.86490	39.45590	37.62300	HepG2	CKAP4
SMC1A	ENSG00000072501.13	1670.29540	3980.64920	-1.25290	34.60070	32.90330	HepG2	BOP1
SMC1A	ENSG00000072501.13	716.48160	1899.83990	-1.40690	28.35590	26.58950	HepG2	EIF2S1
SMC1A	ENSG00000072501.13	1241.69080	2487.92420	-1.00260	27.40520	26.13290	HepG2	TIAL1
SMC1A	ENSG00000072501.13	1652.61360	3535.76320	-1.09730	27.52910	25.85940	HepG2	RPLP0
SMC1A	ENSG00000072501.13	1956.18000	3224.66150	-0.72110	23.32430	21.68050	HepG2	SRSF7
SMC1A	ENSG00000072501.13	2220.54880	3730.45910	-0.74840	21.66110	20.48940	HepG2	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 184 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SMC1A is not available on ENCORE database.

10 RBPs can affect the splicing of SMC1A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SMC1A	ENSG00000072501.13	chrX	-	53448844	53448990	53441929	53442118	53449440	53449618	0.11900	0.00000	0.00012	included	K562	PRPF8
SE	SMC1A	ENSG00000072501.13	chrX	-	53407938	53408008	53407540	53407651	53409152	53409304	-0.24300	0.00000	0.00000	excluded	K562	U2AF2
SE	SMC1A	ENSG00000072501.13	chrX	-	53426510	53426652	53423391	53423537	53430497	53430635	-0.05100	0.00000	0.00003	excluded	K562	U2AF2
A3SS	SMC1A	ENSG00000072501.13	chrX	-	53430708	53430887	53430708	53430825	53431943	53432081	0.10200	0.00000	0.00000	longer	K562	AQR
SE	SMC1A	ENSG00000072501.13	chrX	-	53448844	53448990	53441929	53442118	53449440	53449603	0.13900	0.00004	0.00125	included	K562	HNRNPC
SE	SMC1A	ENSG00000072501.13	chrX	-	53441929	53442118	53441706	53441819	53449440	53449677	-0.08000	0.00015	0.01727	excluded	K562	SUPV3L1
SE	SMC1A	ENSG00000072501.13	chrX	-	53441706	53441819	53440181	53440385	53449440	53449603	0.11500	0.00024	0.05484	included	K562	WDR3
SE	SMC1A	ENSG00000072501.13	chrX	-	53407938	53408008	53407540	53407651	53409152	53409304	-0.08800	0.00038	0.00899	excluded	HepG2	U2AF1
SE	SMC1A	ENSG00000072501.13	chrX	-	53426510	53426652	53423391	53423537	53431943	53432081	-0.05900	0.00110	0.03294	excluded	HepG2	SF3A3
SE	SMC1A	ENSG00000072501.13	chrX	-	53441706	53441819	53440181	53440385	53449440	53449677	-0.15500	0.00169	0.05997	excluded	K562	PTBP1

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SMC1A

General Information

Functions

Localization

Domains (AlphaFold: SMC1A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SMC1A is not avaliable on ENCORE database.

43 proteins are bound to SMC1A RNA:

eCLIP assay for SMC1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SMC1A is not available on ENCORE database.

145 RBPs can affect the gene expression of SMC1A :

The Knockdown/knockout RNA-Seq assay for SMC1A is not available on ENCORE database.

10 RBPs can affect the splicing of SMC1A :

The Knockdown/knockout RNA-Seq assay for SMC1A is not avaliable on ENCORE database.