SMC1A

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SMC1A	ENSG00000072501.17	84.72	87.32	86.02	ENCSR000AEF
HepG2	SMC1A	ENSG00000072501.17	56.27	60.78	58.53	ENCSR985KAT
K562	SMC1A	ENSG00000072501.17	90.56	84.93	87.75	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SMC1A is not avaliable on ENCORE database.

Proteins bound to RNA

SMC1A RNA is bound by 43 proteins.

eCLIP assay for SMC1A is not avaliable on ENCORE database.

43 proteins are bound to SMC1A RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	53406592	53406626	-	3'-UTR,intron-Distal	3.13904	3.17744	HepG2	GRWD1
chrX	53438991	53439041	-	3'-UTR,CDS,intron-Distal	4.39843	18.15737	K562	ZNF622
chrX	53402697	53402744	-	3'-UTR,intron-Distal	4.13667	3.69433	K562	UPF1
chrX	53406962	53407018	-	3'-UTR,intron-Distal	3.45410	3.19579	K562	HNRNPK
chrX	53439072	53439146	-	3'-UTR,CDS,intron-Distal	3.00291	7.80537	K562	GRWD1
chrX	53405237	53405276	-	3'-UTR,intron-Distal	3.46024	4.94406	K562	YBX3
chrX	53406960	53407018	-	3'-UTR,intron-Distal	4.82858	21.73668	HepG2	PCBP2
chrX	53440253	53440329	-	3'-UTR,CDS,intron-Distal	4.02669	5.49678	K562	FMR1
chrX	53440195	53440288	-	3'-UTR,CDS,intron-Distal	3.56476	4.95675	K562	SRSF1
chrX	53439859	53439898	-	3'-UTR,CDS,intron-Distal	3.77068	16.76371	K562	ZNF622
chrX	53431798	53431896	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.73834	4.58968	K562	PRPF8
chrX	53406877	53406960	-	3'-UTR,intron-Distal	4.92899	18.15930	HepG2	PCBP2
chrX	53405959	53405978	-	3'-UTR,intron-Distal	4.06933	4.12025	K562	YBX3
chrX	53439849	53439949	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.42758	6.47196	HepG2	BCLAF1
chrX	53405659	53405734	-	3'-UTR,intron-Distal	3.16861	4.70908	HepG2	QKI
chrX	53439949	53440004	-	3'-UTR,CDS,intron-Distal	3.56199	3.51594	HepG2	AQR
chrX	53438944	53438983	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.03473	4.14326	K562	RBM15
chrX	53406074	53406096	-	3'-UTR,intron-Distal	3.52564	4.30677	K562	YBX3
chrX	53402851	53402904	-	3'-UTR,intron-Distal	3.60034	4.65797	K562	TARDBP
chrX	53440229	53440288	-	3'-UTR,CDS,intron-Distal	3.30678	5.70053	K562	GEMIN5
chrX	53440199	53440240	-	3'-UTR,CDS,intron-Distal	4.72486	20.17423	K562	ZNF622
chrX	53440232	53440247	-	3'-UTR,CDS,intron-Distal	5.20591	26.58159	K562	UCHL5
chrX	53440037	53440088	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.75556	13.63918	K562	ZNF622
chrX	53439114	53439201	-	3'-UTR,CDS,intron-Distal	4.03031	5.10069	HepG2	GRWD1
chrX	53440280	53440319	-	3'-UTR,CDS,intron-Distal	3.57459	4.19414	K562	FXR2
chrX	53406898	53406962	-	3'-UTR,intron-Distal	3.15388	4.07982	K562	PCBP1
chrX	53440182	53440199	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.10973	13.68734	K562	ZNF622
chrX	53406639	53406710	-	3'-UTR,intron-Distal	3.16973	4.96548	K562	NOLC1
chrX	53406596	53406703	-	3'-UTR,intron-Distal	5.18885	49.43712	K562	TARDBP
chrX	53439950	53439988	-	3'-UTR,CDS,intron-Distal	3.22128	4.89505	K562	TRA2A
chrX	53440250	53440325	-	3'-UTR,CDS,intron-Distal	3.29423	3.92763	K562	TRA2A
chrX	53438981	53439044	-	3'-UTR,CDS,intron-Distal	3.25434	21.08662	K562	ZNF800
chrX	53439898	53439939	-	3'-UTR,CDS,intron-Distal	4.20210	15.60758	K562	ZNF622
chrX	53406271	53406324	-	3'-UTR,intron-Distal	5.83773	27.51789	HepG2	SUB1
chrX	53440181	53440191	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.15730	34.61068	K562	UCHL5
chrX	53405005	53405083	-	3'-UTR,intron-Distal	3.04802	7.14274	K562	PABPC4
chrX	53405255	53405337	-	3'-UTR,intron-Distal	4.80010	27.07824	K562	PUM2
chrX	53439195	53439203	-	3'-UTR,CDS,intron-Distal	4.98861	18.46112	K562	UCHL5
chrX	53406963	53407004	-	3'-UTR,intron-Distal	3.74901	11.40933	K562	IGF2BP2
chrX	53440240	53440319	-	3'-UTR,CDS,intron-Distal	4.20415	19.94489	K562	ZNF622
chrX	53405736	53405815	-	3'-UTR,intron-Distal	4.07370	13.01912	K562	LIN28B
chrX	53439850	53439859	-	3'-UTR,CDS,intron-Distal	3.02240	7.06390	K562	ZNF622
chrX	53405399	53405478	-	3'-UTR,intron-Distal	5.60902	12.69254	HepG2	SUB1
chrX	53405554	53405611	-	3'-UTR,intron-Distal	3.61474	4.84679	K562	IGF2BP1
chrX	53439148	53439196	-	3'-UTR,CDS,intron-Distal	3.74225	4.40421	K562	MTPAP
chrX	53402665	53402738	-	3'-UTR,intron-Distal	4.01538	3.88340	K562	TARDBP
chrX	53440248	53440311	-	3'-UTR,CDS,intron-Distal	4.56279	5.13243	HepG2	GRWD1
chrX	53405851	53405894	-	3'-UTR,intron-Distal	4.09514	5.61622	K562	UPF1
chrX	53439884	53439918	-	3'-UTR,CDS,intron-Distal	5.84151	12.88845	K562	TRA2A
chrX	53438943	53438990	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.30119	37.56835	K562	UCHL5
chrX	53439124	53439203	-	3'-UTR,CDS,intron-Distal	3.35584	15.17919	K562	ZNF622
chrX	53440247	53440318	-	3'-UTR,CDS,intron-Distal	4.84348	25.99085	K562	UCHL5
chrX	53439849	53439953	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.63997	72.34591	K562	UCHL5
chrX	53406893	53406922	-	3'-UTR,intron-Distal	3.30848	8.91678	K562	UCHL5
chrX	53438943	53438991	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.97251	26.63032	K562	ZNF622
chrX	53439918	53439950	-	3'-UTR,CDS,intron-Distal	3.98516	8.77610	K562	TRA2A
chrX	53439866	53439922	-	3'-UTR,CDS,intron-Distal	4.48307	4.21087	HepG2	GRWD1
chrX	53440029	53440089	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.35437	3.68901	K562	TRA2A
chrX	53439849	53439967	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.92246	3.80886	HepG2	TRA2A
chrX	53407004	53407021	-	3'-UTR,intron-Distal	4.35368	13.92561	K562	IGF2BP2
chrX	53405829	53405868	-	3'-UTR,intron-Distal	4.19961	4.77733	K562	IGF2BP2
chrX	53440181	53440198	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20754	9.50665	K562	GRWD1
chrX	53439848	53439884	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.63717	6.16964	K562	TRA2A
chrX	53439150	53439204	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.45714	3.42472	HepG2	FXR2
chrX	53404979	53405067	-	3'-UTR,intron-Distal	4.18595	3.97489	K562	TIA1
chrX	53405403	53405453	-	3'-UTR,intron-Distal	3.52207	3.60337	HepG2	FUBP3
chrX	53405276	53405329	-	3'-UTR,intron-Distal	3.87767	5.78947	K562	YBX3
chrX	53439107	53439204	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.20022	7.05570	HepG2	BCLAF1
chrX	53438990	53439063	-	3'-UTR,CDS,intron-Distal	5.59901	33.95435	K562	UCHL5
chrX	53405037	53405076	-	3'-UTR,intron-Distal	3.36822	3.16269	K562	IGF2BP1
chrX	53406106	53406123	-	3'-UTR,intron-Distal	4.26561	10.31015	K562	YBX3
chrX	53439849	53439899	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.37012	4.14322	HepG2	FXR2
chrX	53405736	53405796	-	3'-UTR,intron-Distal	4.65337	6.67079	HepG2	LIN28B
chrX	53439129	53439195	-	3'-UTR,CDS,intron-Distal	4.46330	26.25812	K562	UCHL5
chrX	53405792	53405834	-	3'-UTR,intron-Distal	4.24317	3.98311	K562	IGF2BP1
chrX	53439957	53439997	-	3'-UTR,CDS,intron-Distal	4.08014	10.40438	K562	ZNF622
chrX	53406212	53406259	-	3'-UTR,intron-Distal	3.27382	10.76271	K562	YBX3
chrX	53406318	53406342	-	3'-UTR,intron-Distal	4.44799	5.86108	K562	YBX3
chrX	53440181	53440219	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.64159	4.06415	K562	TRA2A
chrX	53439953	53439994	-	3'-UTR,CDS,intron-Distal	4.60136	21.80751	K562	UCHL5
chrX	53439846	53439950	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.35478	6.52981	K562	MTPAP
chrX	53405297	53405342	-	3'-UTR,intron-Distal	4.69121	4.29122	HepG2	SUB1
chrX	53406123	53406145	-	3'-UTR,intron-Distal	3.87877	10.18354	K562	YBX3
chrX	53405768	53405826	-	3'-UTR,intron-Distal	3.58573	7.19915	K562	UPF1
chrX	53440026	53440088	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.83007	34.59137	K562	UCHL5
chrX	53405786	53405829	-	3'-UTR,intron-Distal	3.61465	5.73934	K562	IGF2BP2
chrX	53438996	53439054	-	3'-UTR,CDS,intron-Distal	3.47740	6.22645	K562	FXR2
chrX	53439084	53439133	-	3'-UTR,CDS,intron-Distal	3.13894	4.16775	K562	TRA2A
chrX	53439133	53439193	-	3'-UTR,CDS,intron-Distal	3.49853	5.65663	K562	TRA2A
chrX	53404571	53404618	-	3'-UTR,intron-Distal	3.51018	3.66308	K562	UPF1
chrX	53404943	53405037	-	3'-UTR,intron-Distal	3.93886	9.12188	K562	IGF2BP1
chrX	53449545	53449584	-	5'-UTR,CDS,intron-Distal	4.26954	11.72700	K562	ZNF622
chrX	53449526	53449607	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.17092	9.41492	K562	FXR2
chrX	53449449	53449620	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.11140	7.92456	K562	DDX3X
chrX	53449529	53449620	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.08676	13.42814	K562	FMR1
chrX	53426510	53426516	-	CDS,intron-Distal,intron-Proximal	3.84544	5.07480	K562	PUM1
chrX	53436041	53436140	-	CDS,intron-Distal	3.47735	23.62773	K562	ZNF800
chrX	53432559	53432605	-	CDS,intron-Distal,intron-Proximal	3.98127	5.45976	K562	MTPAP
chrX	53432702	53432710	-	CDS,intron-Distal,intron-Proximal	3.64966	11.46122	K562	GRWD1
chrX	53438790	53438852	-	CDS,intron-Distal,intron-Proximal	3.30787	5.04063	K562	MTPAP
chrX	53441993	53442044	-	CDS,intron-Distal	3.44068	6.76685	K562	YBX3
chrX	53449440	53449514	-	CDS,intron-Distal	3.16911	4.26492	HepG2	BCLAF1
chrX	53436116	53436159	-	CDS,intron-Distal	3.49128	9.73729	K562	GRWD1
chrX	53436351	53436356	-	CDS,intron-Distal,intron-Proximal	4.89051	27.16463	K562	UCHL5
chrX	53441709	53441728	-	CDS,intron-Distal	4.40678	17.97801	K562	YBX3
chrX	53436357	53436414	-	CDS,intron-Distal	4.23675	5.74979	HepG2	GRWD1
chrX	53426638	53426652	-	CDS,intron-Distal	4.18951	10.79178	K562	ZNF622
chrX	53410021	53410041	-	CDS,intron-Distal	4.46434	5.49297	K562	GRWD1
chrX	53436159	53436201	-	CDS,intron-Distal,intron-Proximal	3.42638	33.23867	K562	PUM1
chrX	53440344	53440374	-	CDS,intron-Distal	4.95514	21.01534	K562	UCHL5
chrX	53436031	53436114	-	CDS,intron-Distal	3.96810	24.63897	K562	UCHL5
chrX	53410141	53410174	-	CDS,intron-Distal	3.55032	10.08361	K562	ZNF622
chrX	53426599	53426642	-	CDS,intron-Distal	4.47952	18.22006	K562	GRWD1
chrX	53441634	53441734	-	CDS,intron-Distal,intron-Proximal	5.47274	5.68502	HepG2	PRPF8
chrX	53432178	53432201	-	CDS,intron-Distal,intron-Proximal	3.36282	5.18217	K562	PUM1
chrX	53432702	53432817	-	CDS,intron-Distal,intron-Proximal	4.11573	3.26022	HepG2	PRPF4
chrX	53436351	53436395	-	CDS,intron-Distal,intron-Proximal	4.80062	5.70640	HepG2	BCLAF1
chrX	53409206	53409247	-	CDS,intron-Distal	3.37761	4.24070	HepG2	GRWD1
chrX	53407638	53407701	-	CDS,intron-Distal,intron-Proximal	4.79891	4.90235	K562	SF3B4
chrX	53438782	53438825	-	CDS,intron-Distal	4.76069	13.39256	K562	ZNF622
chrX	53410018	53410054	-	CDS,intron-Distal	3.32169	7.63960	K562	UCHL5
chrX	53436114	53436179	-	CDS,intron-Distal	4.78213	30.73577	K562	UCHL5
chrX	53438770	53438816	-	CDS,intron-Distal	3.56878	4.71116	K562	CPSF6
chrX	53441706	53441731	-	CDS,intron-Distal,intron-Proximal	3.10260	4.66004	K562	GRWD1
chrX	53442094	53442109	-	CDS,intron-Distal	3.12709	7.22113	K562	YBX3
chrX	53432425	53432504	-	CDS,intron-Distal	4.42262	35.45840	K562	UCHL5
chrX	53432597	53432605	-	CDS,intron-Distal,intron-Proximal	4.42028	10.73429	K562	GRWD1
chrX	53435991	53436017	-	CDS,intron-Distal,intron-Proximal	3.75051	14.27725	K562	UCHL5
chrX	53441787	53441816	-	CDS,intron-Distal	4.17027	4.21087	HepG2	GRWD1
chrX	53430709	53430754	-	CDS,intron-Distal	3.88952	15.56303	K562	UCHL5
chrX	53438788	53438855	-	CDS,intron-Distal,intron-Proximal	3.33161	4.85223	HepG2	BUD13
chrX	53432550	53432595	-	CDS,intron-Distal	4.57449	29.94264	K562	UCHL5
chrX	53432761	53432830	-	CDS,intron-Distal	4.19472	7.03378	HepG2	GRWD1
chrX	53438818	53438851	-	CDS,intron-Distal,intron-Proximal	3.75335	5.08339	K562	TRA2A
chrX	53432595	53432604	-	CDS,intron-Distal,intron-Proximal	4.43141	23.18086	K562	UCHL5
chrX	53440374	53440385	-	CDS,intron-Distal	4.74810	15.92432	K562	UCHL5
chrX	53432755	53432811	-	CDS,intron-Distal	3.33227	6.26015	K562	RBM15
chrX	53436181	53436189	-	CDS,intron-Distal	3.43310	9.20582	K562	GRWD1
chrX	53410139	53410174	-	CDS,intron-Distal	4.71663	20.72459	K562	UCHL5
chrX	53432556	53432605	-	CDS,intron-Distal,intron-Proximal	3.34391	7.47223	K562	ZNF800
chrX	53423248	53423293	-	CDS,intron-Distal,intron-Proximal	5.15636	25.05639	K562	UCHL5
chrX	53436351	53436414	-	CDS,intron-Distal,intron-Proximal	3.62553	23.27985	K562	ZNF622
chrX	53432702	53432706	-	CDS,intron-Distal,intron-Proximal	4.93909	23.90088	K562	ZNF622
chrX	53430730	53430744	-	CDS,intron-Distal	4.20210	7.27704	K562	ZNF622
chrX	53421766	53421795	-	CDS,intron-Distal	3.99192	11.49349	K562	UCHL5
chrX	53430485	53430590	-	CDS,intron-Distal,intron-Proximal	3.46901	3.33003	HepG2	TRA2A
chrX	53441728	53441743	-	CDS,intron-Distal	4.23629	14.71595	K562	YBX3
chrX	53430497	53430587	-	CDS,intron-Distal,intron-Proximal	3.32401	24.15938	K562	ZNF800
chrX	53436414	53436433	-	CDS,intron-Distal	4.80773	12.66167	K562	ZNF622
chrX	53431944	53432024	-	CDS,intron-Distal	3.98995	7.27605	HepG2	GRWD1
chrX	53432504	53432550	-	CDS,intron-Distal	5.11116	18.46112	K562	UCHL5
chrX	53432863	53432885	-	CDS,intron-Distal	4.49200	5.90379	K562	GRWD1
chrX	53432428	53432532	-	CDS,intron-Distal	3.92689	6.81726	HepG2	GRWD1
chrX	53441645	53441717	-	CDS,intron-Distal,intron-Proximal	3.33787	4.65130	K562	PRPF8
chrX	53436126	53436167	-	CDS,intron-Distal	4.16510	14.16803	K562	ZNF622
chrX	53436411	53436433	-	CDS,intron-Distal	4.44632	17.85310	K562	UCHL5
chrX	53423235	53423276	-	CDS,intron-Distal	3.32846	8.41511	K562	ZNF622
chrX	53423457	53423506	-	CDS,intron-Distal	3.34597	11.44572	K562	ZNF622
chrX	53436116	53436174	-	CDS,intron-Distal	4.23693	6.70275	K562	RBM15
chrX	53432030	53432078	-	CDS,intron-Distal,intron-Proximal	3.69092	10.08361	K562	ZNF622
chrX	53409564	53409579	-	CDS,intron-Distal,intron-Proximal	4.14235	9.87150	K562	UCHL5
chrX	53407629	53407651	-	CDS,intron-Distal	3.30660	7.98531	K562	YBX3
chrX	53431890	53431946	-	CDS,intron-Distal,intron-Proximal	3.68712	6.21987	K562	AQR
chrX	53432701	53432761	-	CDS,intron-Distal,intron-Proximal	5.11920	14.24868	HepG2	GRWD1
chrX	53438845	53438851	-	CDS,intron-Distal,intron-Proximal	4.79393	24.70896	K562	UCHL5
chrX	53423409	53423489	-	CDS,intron-Distal	3.67483	3.80897	HepG2	FXR2
chrX	53438771	53438845	-	CDS,intron-Distal	6.20820	52.32078	K562	UCHL5
chrX	53432703	53432841	-	CDS,intron-Distal,intron-Proximal	3.39264	21.59648	K562	PUM1
chrX	53410133	53410174	-	CDS,intron-Distal	3.64936	4.45064	HepG2	GRWD1
chrX	53441995	53442032	-	CDS,intron-Distal	3.21921	6.46814	K562	ZNF622
chrX	53426599	53426638	-	CDS,intron-Distal	4.74479	14.06300	K562	ZNF622
chrX	53421784	53421806	-	CDS,intron-Distal	3.43501	5.76525	K562	PUM1
chrX	53436168	53436200	-	CDS,intron-Distal	3.94597	4.41784	HepG2	GRWD1
chrX	53423389	53423530	-	CDS,intron-Distal,intron-Proximal	4.17666	8.19556	HepG2	BCLAF1
chrX	53409220	53409247	-	CDS,intron-Distal	3.66109	9.11524	K562	UCHL5
chrX	53436137	53436176	-	CDS,intron-Distal	3.42259	3.57857	HepG2	BCLAF1
chrX	53441988	53442057	-	CDS,intron-Distal	4.69183	5.90466	K562	FXR2
chrX	53436032	53436110	-	CDS,intron-Distal	5.04222	30.06028	K562	ZNF622
chrX	53423389	53423436	-	CDS,intron-Distal,intron-Proximal	3.48026	12.94920	K562	PUM1
chrX	53432598	53432604	-	CDS,intron-Distal,intron-Proximal	4.25309	6.39499	HepG2	GRWD1
chrX	53430820	53430868	-	CDS,intron-Distal,intron-Proximal	4.38889	6.99120	K562	AQR
chrX	53432447	53432527	-	CDS,intron-Distal	3.27151	11.99298	K562	PUM1
chrX	53440358	53440386	-	CDS,intron-Distal,intron-Proximal	3.55689	8.41511	K562	ZNF622
chrX	53436356	53436411	-	CDS,intron-Distal	5.44934	44.79931	K562	UCHL5
chrX	53423462	53423535	-	CDS,intron-Distal	4.18873	22.02378	K562	UCHL5
chrX	53432596	53432604	-	CDS,intron-Distal,intron-Proximal	4.45270	16.72758	K562	ZNF622
chrX	53436351	53436435	-	CDS,intron-Distal,intron-Proximal	3.07929	5.31767	K562	GPKOW
chrX	53436351	53436398	-	CDS,intron-Distal,intron-Proximal	3.58885	44.99607	K562	PUM1
chrX	53441930	53441993	-	CDS,intron-Distal	3.30111	9.50180	K562	YBX3
chrX	53438710	53438780	-	CDS,intron-Distal,intron-Proximal	4.82726	4.50566	HepG2	FXR2
chrX	53423276	53423299	-	CDS,intron-Distal,intron-Proximal	3.01165	6.63268	K562	GRWD1
chrX	53423442	53423508	-	CDS,intron-Distal	4.78814	5.38689	K562	FMR1
chrX	53436115	53436202	-	CDS,intron-Distal,intron-Proximal	4.14947	4.82719	K562	TRA2A
chrX	53421697	53421733	-	CDS,intron-Distal,intron-Proximal	4.54957	20.00770	K562	UCHL5
chrX	53436176	53436201	-	CDS,intron-Distal,intron-Proximal	4.67384	5.03746	HepG2	BCLAF1
chrX	53423391	53423435	-	CDS,intron-Distal,intron-Proximal	4.27398	17.65347	K562	UCHL5
chrX	53432701	53432758	-	CDS,intron-Distal,intron-Proximal	4.46928	37.30226	K562	UCHL5
chrX	53438711	53438722	-	CDS,intron-Distal	4.52772	10.28502	K562	ZNF622
chrX	53449484	53449522	-	CDS,intron-Distal	3.87981	10.57812	K562	UCHL5
chrX	53449440	53449475	-	CDS,intron-Distal	3.52530	4.65867	K562	MTPAP
chrX	53423390	53423432	-	CDS,intron-Distal,intron-Proximal	3.81943	13.36200	K562	ZNF622
chrX	53441706	53441709	-	CDS,intron-Distal,intron-Proximal	4.79784	16.02399	K562	YBX3
chrX	53430496	53430499	-	CDS,intron-Distal,intron-Proximal	4.25725	14.72043	K562	GRWD1
chrX	53438710	53438726	-	CDS,intron-Distal,intron-Proximal	4.36513	15.01054	K562	UCHL5
chrX	53436189	53436200	-	CDS,intron-Distal	3.15707	10.13638	K562	GRWD1
chrX	53436174	53436201	-	CDS,intron-Distal,intron-Proximal	3.22285	6.87198	K562	RBM15
chrX	53432532	53432598	-	CDS,intron-Distal	4.75657	9.72888	HepG2	GRWD1
chrX	53441931	53441990	-	CDS,intron-Distal	4.52729	5.82083	HepG2	GRWD1
chrX	53423290	53423300	-	CDS,intron-Distal,intron-Proximal	3.46377	10.76546	K562	ZNF800
chrX	53407585	53407629	-	CDS,intron-Distal	3.59724	13.84239	K562	YBX3
chrX	53432710	53432772	-	CDS,intron-Distal	3.17426	14.54573	K562	GRWD1
chrX	53436397	53436431	-	CDS,intron-Distal	3.34875	3.11443	K562	MTPAP
chrX	53426516	53426569	-	CDS,intron-Distal	3.03261	5.97041	K562	PUM1
chrX	53430537	53430588	-	CDS,intron-Distal	3.96097	18.19956	K562	ZNF622
chrX	53432701	53432792	-	CDS,intron-Distal,intron-Proximal	3.15763	6.38443	HepG2	BCLAF1
chrX	53430496	53430593	-	CDS,intron-Distal,intron-Proximal	3.70446	17.70677	K562	PUM1
chrX	53431984	53432066	-	CDS,intron-Distal	3.39852	7.67040	K562	FXR2
chrX	53442109	53442119	-	CDS,intron-Distal,intron-Proximal	3.22023	8.47737	K562	YBX3
chrX	53430511	53430589	-	CDS,intron-Distal	4.54796	56.32195	K562	UCHL5
chrX	53432179	53432276	-	CDS,intron-Distal,intron-Proximal	3.30818	3.77614	HepG2	G3BP1
chrX	53436350	53436417	-	CDS,intron-Distal,intron-Proximal	3.14744	6.28230	HepG2	PPIG
chrX	53423527	53423537	-	CDS,intron-Distal	3.12452	7.01051	K562	PUM1
chrX	53432758	53432813	-	CDS,intron-Distal	4.76555	20.72459	K562	UCHL5
chrX	53436032	53436159	-	CDS,intron-Distal	3.32467	28.71631	K562	PUM1
chrX	53436057	53436122	-	CDS,intron-Distal	3.28637	3.77649	K562	LIN28B
chrX	53431946	53431969	-	CDS,intron-Distal	4.17092	3.42335	K562	FXR2
chrX	53431981	53432056	-	CDS,intron-Distal	5.03776	15.51524	K562	FMR1
chrX	53426617	53426652	-	CDS,intron-Distal	4.85724	51.19952	K562	UCHL5
chrX	53438710	53438761	-	CDS,intron-Distal,intron-Proximal	4.69627	4.29290	K562	TRA2A
chrX	53432555	53432597	-	CDS,intron-Distal	5.69044	12.86075	K562	GRWD1
chrX	53432427	53432477	-	CDS,intron-Distal	5.24159	7.80708	K562	FXR2
chrX	53435992	53436032	-	CDS,intron-Distal,intron-Proximal	3.60693	11.63220	K562	ZNF622
chrX	53436398	53436421	-	CDS,intron-Distal	3.64756	18.82183	K562	PUM1
chrX	53436023	53436102	-	CDS,intron-Distal	4.31280	7.27605	HepG2	GRWD1
chrX	53431898	53431955	-	CDS,intron-Distal,intron-Proximal	5.50481	7.02967	HepG2	PRPF8
chrX	53442014	53442094	-	CDS,intron-Distal	4.93988	8.08487	HepG2	GRWD1
chrX	53423147	53423159	-	CDS,intron-Distal	3.54994	8.75642	K562	UCHL5
chrX	53436167	53436200	-	CDS,intron-Distal	3.69232	16.95148	K562	ZNF622
chrX	53407937	53407954	-	CDS,intron-Distal,intron-Proximal	4.09421	7.93174	K562	YBX3
chrX	53407972	53408009	-	CDS,intron-Distal,intron-Proximal	4.19489	9.22606	K562	YBX3
chrX	53441754	53441785	-	CDS,intron-Distal	3.57335	6.78413	K562	ZNF622
chrX	53449443	53449465	-	CDS,intron-Distal	3.70257	9.05903	K562	UCHL5
chrX	53430493	53430590	-	CDS,intron-Distal,intron-Proximal	5.47064	7.64336	HepG2	GRWD1
chrX	53432177	53432204	-	CDS,intron-Distal,intron-Proximal	3.29852	6.52802	K562	ZNF622
chrX	53423390	53423442	-	CDS,intron-Distal,intron-Proximal	3.22246	6.48076	K562	FXR2
chrX	53449443	53449510	-	CDS,intron-Distal	4.06996	15.99701	K562	YBX3
chrX	53426573	53426653	-	CDS,intron-Distal,intron-Proximal	4.45203	8.47938	HepG2	BCLAF1
chrX	53423233	53423301	-	CDS,intron-Distal,intron-Proximal	4.65029	7.24138	K562	FXR2
chrX	53436350	53436399	-	CDS,intron-Distal,intron-Proximal	3.46518	10.04660	HepG2	AQR
chrX	53423264	53423300	-	CDS,intron-Distal,intron-Proximal	4.90227	5.68196	HepG2	BCLAF1
chrX	53432851	53432874	-	CDS,intron-Distal	3.76305	14.46943	K562	UCHL5
chrX	53432855	53432889	-	CDS,intron-Distal,intron-Proximal	3.91841	6.26041	K562	FXR2
chrX	53423180	53423248	-	CDS,intron-Distal	4.13166	17.33834	K562	UCHL5
chrX	53423252	53423301	-	CDS,intron-Distal,intron-Proximal	5.20071	8.99884	HepG2	GRWD1
chrX	53436177	53436201	-	CDS,intron-Distal,intron-Proximal	3.32971	3.09251	K562	METAP2
chrX	53426523	53426651	-	CDS,intron-Distal	5.39957	8.57637	HepG2	FXR2
chrX	53423146	53423174	-	CDS,intron-Distal,intron-Proximal	4.26525	8.56425	K562	FXR2
chrX	53432874	53432888	-	CDS,intron-Distal	3.94062	13.91478	K562	UCHL5
chrX	53423293	53423300	-	CDS,intron-Distal,intron-Proximal	4.04635	12.99675	K562	UCHL5
chrX	53426565	53426617	-	CDS,intron-Distal	4.90244	39.17826	K562	UCHL5
chrX	53432706	53432841	-	CDS,intron-Distal	4.92213	46.14335	K562	ZNF622
chrX	53421777	53421807	-	CDS,intron-Distal	4.50291	6.11760	K562	GRWD1
chrX	53430589	53430604	-	CDS,intron-Distal	5.15884	15.48209	K562	UCHL5
chrX	53431990	53432081	-	CDS,intron-Distal,intron-Proximal	4.95683	41.39687	K562	UCHL5
chrX	53432859	53432887	-	CDS,intron-Distal	3.23478	6.67248	K562	ZNF800
chrX	53430497	53430511	-	CDS,intron-Distal,intron-Proximal	3.96458	25.66236	K562	UCHL5
chrX	53423153	53423171	-	CDS,intron-Distal	3.21262	6.17947	K562	PUM1
chrX	53432176	53432216	-	CDS,intron-Distal,intron-Proximal	3.96617	21.65704	K562	UCHL5
chrX	53409162	53409189	-	CDS,intron-Distal	3.45532	7.24294	K562	YBX3
chrX	53432570	53432604	-	CDS,intron-Distal,intron-Proximal	3.74386	4.80676	K562	RBM15
chrX	53421795	53421808	-	CDS,intron-Distal	3.52892	11.29985	K562	UCHL5
chrX	53435995	53436007	-	CDS,intron-Distal	4.13487	4.47351	K562	GRWD1
chrX	53426513	53426520	-	CDS,intron-Distal	3.34707	6.32494	K562	UCHL5
chrX	53441706	53441737	-	CDS,intron-Distal,intron-Proximal	3.83731	9.20664	K562	ZNF622
chrX	53440356	53440385	-	CDS,intron-Distal	4.23310	14.27079	K562	YBX3
chrX	53423216	53423300	-	CDS,intron-Distal,intron-Proximal	3.52366	17.02162	K562	PUM1
chrX	53432574	53432596	-	CDS,intron-Distal	4.24816	23.36362	K562	ZNF622
chrX	53438732	53438770	-	CDS,intron-Distal	4.15233	10.73371	K562	ZNF622
chrX	53407552	53407585	-	CDS,intron-Distal	3.65289	9.07921	K562	YBX3
chrX	53432854	53432886	-	CDS,intron-Distal	4.31586	3.34184	HepG2	GRWD1
chrX	53423153	53423192	-	CDS,intron-Distal	4.72433	7.40329	K562	GRWD1
chrX	53423442	53423512	-	CDS,intron-Distal	3.18492	5.65938	K562	FXR2
chrX	53449440	53449443	-	CDS,intron-Distal	3.96024	12.11727	K562	YBX3
chrX	53430497	53430537	-	CDS,intron-Distal,intron-Proximal	4.20834	17.25540	K562	ZNF622
chrX	53441706	53441744	-	CDS,intron-Distal,intron-Proximal	3.91866	11.79915	K562	UCHL5
chrX	53449459	53449490	-	CDS,intron-Distal	3.27321	18.97159	K562	ZNF622
chrX	53436150	53436202	-	CDS,intron-Distal,intron-Proximal	3.22627	7.41781	HepG2	AQR
chrX	53423255	53423276	-	CDS,intron-Distal	3.37256	7.47808	K562	GRWD1
chrX	53436179	53436200	-	CDS,intron-Distal	4.66791	22.94344	K562	UCHL5
chrX	53441982	53442067	-	CDS,intron-Distal	3.24317	6.38492	K562	FMR1
chrX	53430593	53430602	-	CDS,intron-Distal	3.23110	6.67170	K562	ZNF622
chrX	53432701	53432800	-	CDS,intron-Distal,intron-Proximal	3.13384	13.31431	K562	ZNF800
chrX	53430708	53430720	-	CDS,intron-Distal,intron-Proximal	3.07058	5.39278	K562	ZNF622
chrX	53432772	53432816	-	CDS,intron-Distal	3.17528	7.48216	K562	GRWD1
chrX	53426642	53426653	-	CDS,intron-Distal,intron-Proximal	4.86908	16.12979	K562	GRWD1
chrX	53436421	53436434	-	CDS,intron-Distal	3.41088	10.58323	K562	PUM1
chrX	53438727	53438771	-	CDS,intron-Distal	5.25602	24.68785	K562	UCHL5
chrX	53449490	53449534	-	CDS,intron-Distal	3.40673	16.42270	K562	ZNF622
chrX	53421697	53421726	-	CDS,intron-Distal,intron-Proximal	3.29736	9.54151	K562	ZNF622
chrX	53423146	53423201	-	CDS,intron-Distal,intron-Proximal	3.28891	10.12596	K562	ZNF622
chrX	53421772	53421809	-	CDS,intron-Distal,intron-Proximal	4.06031	9.12426	K562	FXR2
chrX	53423451	53423490	-	CDS,intron-Distal	4.29345	4.23295	HepG2	GRWD1
chrX	53432427	53432513	-	CDS,intron-Distal	4.79334	28.45958	K562	ZNF622
chrX	53436351	53436420	-	CDS,intron-Distal,intron-Proximal	4.35030	4.42137	HepG2	HLTF
chrX	53423276	53423300	-	CDS,intron-Distal,intron-Proximal	3.82693	10.31263	K562	ZNF622
chrX	53431993	53432069	-	CDS,intron-Distal	3.31556	11.69418	K562	ZNF800
chrX	53432560	53432606	-	CDS,intron-Distal,intron-Proximal	3.16530	5.40132	HepG2	BCLAF1
chrX	53423390	53423434	-	CDS,intron-Distal,intron-Proximal	4.77647	6.73025	HepG2	GRWD1
chrX	53432424	53432491	-	CDS,intron-Distal,intron-Proximal	3.86186	10.94818	K562	FMR1
chrX	53432702	53432799	-	CDS,intron-Distal,intron-Proximal	4.03449	3.23099	HepG2	UCHL5
chrX	53426599	53426652	-	CDS,intron-Distal	3.92406	4.88141	HepG2	GRWD1
chrX	53432430	53432531	-	CDS,intron-Distal	3.14827	7.17132	K562	GRWD1
chrX	53426609	53426653	-	CDS,intron-Distal,intron-Proximal	3.60120	11.38412	K562	ZNF800
chrX	53438825	53438852	-	CDS,intron-Distal,intron-Proximal	5.16228	22.22778	K562	ZNF622
chrX	53436414	53436432	-	CDS,intron-Distal	3.91551	3.34184	HepG2	GRWD1
chrX	53409266	53409286	-	CDS,intron-Distal	3.30450	3.50696	K562	BUD13
chrX	53425369	53425492	-	intron-Distal	3.59261	4.23286	HepG2	QKI
chrX	53427119	53427249	-	intron-Distal	5.23545	7.72686	K562	ILF3
chrX	53427054	53427119	-	intron-Distal	4.77098	4.58544	K562	ILF3
chrX	53410873	53411000	-	intron-Distal	5.67845	13.19203	HepG2	QKI
chrX	53408883	53408955	-	intron-Distal	4.44905	4.50934	HepG2	RBFOX2
chrX	53438670	53438709	-	intron-Distal,intron-Proximal	4.56086	4.09264	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SMC1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SMC1A is not available on ENCORE database.
145 RBPs can affect the levels of SMC1A.

The Knockdown/knockout RNA-Seq assay for SMC1A is not available on ENCORE database.

145 RBPs can affect the gene expression of SMC1A :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SMC1A	ENSG00000072501.13	2021.92410	2839.81690	-0.49010	3.26380	1.39690	HepG2	AARS
SMC1A	ENSG00000072501.13	2592.92150	2954.18640	-0.18820	2.41060	1.83590	HepG2	ACO1
SMC1A	ENSG00000072501.13	2295.72780	2968.11240	-0.37060	6.67390	5.53550	HepG2	AKAP8L
SMC1A	ENSG00000072501.13	972.88430	1987.20730	-1.03040	16.71010	14.96430	HepG2	ASCC1
SMC1A	ENSG00000072501.13	2896.22740	3887.47790	-0.42470	9.23660	8.10350	HepG2	AUH
SMC1A	ENSG00000072501.13	1759.19280	2897.38280	-0.71980	8.20200	6.54480	HepG2	BCCIP
SMC1A	ENSG00000072501.13	1270.13980	2517.54480	-0.98700	15.29530	13.45630	HepG2	BCLAF1
SMC1A	ENSG00000072501.13	1670.29540	3980.64920	-1.25290	34.60070	32.90330	HepG2	BOP1
SMC1A	ENSG00000072501.13	2193.95300	3370.17400	-0.61930	12.21210	10.78270	HepG2	CALR
SMC1A	ENSG00000072501.13	1621.76960	2953.60020	-0.86490	39.45590	37.62300	HepG2	CKAP4
SMC1A	ENSG00000072501.13	2536.60450	3654.44470	-0.52680	6.47030	5.45180	HepG2	CPSF6
SMC1A	ENSG00000072501.13	1834.20220	2337.39510	-0.34970	3.98240	2.75880	HepG2	YBX3
SMC1A	ENSG00000072501.13	3089.48030	3539.72970	-0.19630	1.93670	1.38060	HepG2	CELF1
SMC1A	ENSG00000072501.13	3130.94770	3805.62310	-0.28150	4.76070	3.82850	HepG2	DAZAP1
SMC1A	ENSG00000072501.13	2083.18990	2732.22490	-0.39130	8.59280	7.26820	HepG2	DDX19B
SMC1A	ENSG00000072501.13	1345.85380	2340.67710	-0.79840	20.19640	17.65380	HepG2	DDX1
SMC1A	ENSG00000072501.13	1944.39420	2592.59650	-0.41510	4.58530	3.73690	HepG2	DDX21
SMC1A	ENSG00000072501.13	1776.27360	2536.04420	-0.51370	7.68030	6.16960	HepG2	DDX24
SMC1A	ENSG00000072501.13	1367.37870	2300.61850	-0.75060	9.50150	8.40280	HepG2	DDX3X
SMC1A	ENSG00000072501.13	1478.24220	2848.75730	-0.94650	13.60600	12.06120	HepG2	DDX55
SMC1A	ENSG00000072501.13	2772.21890	4149.89320	-0.58200	3.31400	2.24710	HepG2	DDX59
SMC1A	ENSG00000072501.13	2509.39860	3234.58300	-0.36620	3.39380	2.28330	HepG2	DDX5
SMC1A	ENSG00000072501.13	1082.09260	1976.43720	-0.86910	10.44090	9.32440	HepG2	DDX6
SMC1A	ENSG00000072501.13	1624.74670	2213.68570	-0.44620	4.96430	3.67120	HepG2	DHX30
SMC1A	ENSG00000072501.13	2132.72450	2826.37030	-0.40630	7.80170	6.77450	HepG2	DKC1
SMC1A	ENSG00000072501.13	1530.93890	2295.17610	-0.58420	11.97570	10.59470	HepG2	DNAJC21
SMC1A	ENSG00000072501.13	1090.62680	2274.86650	-1.06060	50.18930	47.66090	HepG2	DNAJC2
SMC1A	ENSG00000072501.13	1611.29420	2088.73610	-0.37440	3.11470	1.94070	HepG2	EFTUD2
SMC1A	ENSG00000072501.13	1459.49820	2386.54840	-0.70950	6.92030	5.19920	HepG2	AGO1
SMC1A	ENSG00000072501.13	716.48160	1899.83990	-1.40690	28.35590	26.58950	HepG2	EIF2S1
SMC1A	ENSG00000072501.13	1603.16940	2033.97400	-0.34340	2.24060	1.41870	HepG2	EIF3D
SMC1A	ENSG00000072501.13	2392.82770	3754.87310	-0.65000	18.59130	16.82500	HepG2	EIF4G1
SMC1A	ENSG00000072501.13	2145.94970	3596.85770	-0.74510	11.97210	10.35040	HepG2	EIF4G2
SMC1A	ENSG00000072501.13	3563.40100	4463.23120	-0.32480	5.61730	4.81070	HepG2	ETF1
SMC1A	ENSG00000072501.13	1971.70470	2886.81750	-0.55000	8.30480	6.86900	HepG2	EWSR1
SMC1A	ENSG00000072501.13	1484.29940	1817.99630	-0.29260	2.83460	1.65180	HepG2	FAM120A
SMC1A	ENSG00000072501.13	2093.18320	3660.72550	-0.80640	3.94740	2.73110	HepG2	FTO
SMC1A	ENSG00000072501.13	1655.79640	1357.61690	0.28630	2.19590	1.48810	HepG2	FUBP3
SMC1A	ENSG00000072501.13	2104.81850	3026.73490	-0.52410	3.64230	2.36470	HepG2	FUS
SMC1A	ENSG00000072501.13	3146.59840	2118.50770	0.57060	6.31400	5.29470	HepG2	FXR1
SMC1A	ENSG00000072501.13	2868.50590	4142.57560	-0.53020	5.35780	4.48560	HepG2	GPKOW
SMC1A	ENSG00000072501.13	2131.99770	2820.43620	-0.40370	7.88660	6.34410	HepG2	HDGF
SMC1A	ENSG00000072501.13	1593.32060	2317.16400	-0.54030	7.20390	6.23360	HepG2	HNRNPA1
SMC1A	ENSG00000072501.13	2527.54680	3497.69630	-0.46870	7.49360	6.08590	HepG2	HNRNPA2B1
SMC1A	ENSG00000072501.13	1499.05670	2577.40250	-0.78190	13.70110	12.26970	HepG2	HNRNPC
SMC1A	ENSG00000072501.13	2150.44250	3282.20220	-0.61000	16.97810	15.39540	HepG2	HNRNPF
SMC1A	ENSG00000072501.13	2830.02070	3466.49320	-0.29270	5.77080	4.82750	HepG2	HNRNPL
SMC1A	ENSG00000072501.13	2205.24790	3953.33820	-0.84210	14.36120	13.08190	HepG2	HNRNPLL
SMC1A	ENSG00000072501.13	1557.15110	2560.36330	-0.71740	21.97790	20.38210	HepG2	HNRNPU
SMC1A	ENSG00000072501.13	2153.32360	3232.03030	-0.58590	10.64490	9.31470	HepG2	IGF2BP1
SMC1A	ENSG00000072501.13	1531.65120	1997.44380	-0.38310	2.98060	2.28420	HepG2	IGF2BP2
SMC1A	ENSG00000072501.13	2285.37130	2615.32880	-0.19460	2.92480	2.17330	HepG2	ILF2
SMC1A	ENSG00000072501.13	2350.97530	2700.53150	-0.20000	2.87100	1.83790	HepG2	KIF1C
SMC1A	ENSG00000072501.13	3673.60430	5022.50010	-0.45120	3.43860	2.51090	HepG2	LARP4
SMC1A	ENSG00000072501.13	2687.05810	2131.07210	0.33430	2.21030	1.64340	HepG2	MATR3
SMC1A	ENSG00000072501.13	2386.02230	3159.95250	-0.40530	4.59450	3.57300	HepG2	MSI2
SMC1A	ENSG00000072501.13	2349.52270	4031.93980	-0.77910	7.08950	5.50370	HepG2	MTPAP
SMC1A	ENSG00000072501.13	1748.16840	2181.24040	-0.31930	2.09620	1.54130	HepG2	NCBP2
SMC1A	ENSG00000072501.13	1288.58070	1942.39700	-0.59210	6.01080	4.95720	HepG2	PABPC4
SMC1A	ENSG00000072501.13	2018.71100	2534.33890	-0.32820	5.08840	3.98710	HepG2	PARN
SMC1A	ENSG00000072501.13	1622.36400	1969.43120	-0.27970	2.74210	2.13720	HepG2	PCBP1
SMC1A	ENSG00000072501.13	1367.99120	2865.22500	-1.06660	11.90610	9.97530	HepG2	PCBP2
SMC1A	ENSG00000072501.13	1748.61190	2449.04530	-0.48600	3.66130	1.73330	HepG2	PHF6
SMC1A	ENSG00000072501.13	1849.60530	2283.64190	-0.30410	3.72930	2.88590	HepG2	PPIL4
SMC1A	ENSG00000072501.13	2472.48830	2927.70320	-0.24380	3.24540	2.41430	HepG2	PRPF4
SMC1A	ENSG00000072501.13	1004.93110	2197.43900	-1.12870	20.54760	18.65180	HepG2	PRPF8
SMC1A	ENSG00000072501.13	2384.30050	3602.42670	-0.59540	9.32100	8.31500	HepG2	PUF60
SMC1A	ENSG00000072501.13	2610.69060	3821.39750	-0.54970	9.90490	8.67740	HepG2	PUM2
SMC1A	ENSG00000072501.13	2022.23090	3009.03860	-0.57340	17.18210	15.88090	HepG2	PUS1
SMC1A	ENSG00000072501.13	1500.81440	2764.94080	-0.88150	6.68950	5.61940	HepG2	RAVER1
SMC1A	ENSG00000072501.13	3393.60580	4323.83870	-0.34950	4.57130	3.50300	HepG2	RBM15
SMC1A	ENSG00000072501.13	2220.54880	3730.45910	-0.74840	21.66110	20.48940	HepG2	RBM22
SMC1A	ENSG00000072501.13	2337.81850	3077.85360	-0.39680	3.70110	2.54400	HepG2	RBM27
SMC1A	ENSG00000072501.13	2753.62070	2230.26130	0.30400	4.75000	4.07580	HepG2	NELFE
SMC1A	ENSG00000072501.13	2647.65250	2077.37350	0.34990	6.17710	5.30600	HepG2	RECQL
SMC1A	ENSG00000072501.13	1652.61360	3535.76320	-1.09730	27.52910	25.85940	HepG2	RPLP0
SMC1A	ENSG00000072501.13	1580.77230	2716.13830	-0.78090	6.58120	5.17090	HepG2	RPS10
SMC1A	ENSG00000072501.13	1535.31950	1979.21760	-0.36640	3.76390	3.05720	HepG2	RPS19
SMC1A	ENSG00000072501.13	2016.17460	2838.59190	-0.49360	5.46190	4.35960	HepG2	RPS2
SMC1A	ENSG00000072501.13	2301.37170	2897.59140	-0.33240	2.74600	1.67620	HepG2	RPS5
SMC1A	ENSG00000072501.13	915.11560	2173.70750	-1.24810	21.92880	20.11030	HepG2	RRP9
SMC1A	ENSG00000072501.13	1870.71910	2280.12500	-0.28550	4.50660	3.71790	HepG2	SAFB2
SMC1A	ENSG00000072501.13	1547.87030	1986.34040	-0.35980	2.80610	1.86020	HepG2	SERBP1
SMC1A	ENSG00000072501.13	2860.67520	4203.96030	-0.55540	4.60240	3.72130	HepG2	SF3A3
SMC1A	ENSG00000072501.13	2400.20530	3913.01100	-0.70510	11.88060	10.51290	HepG2	SF3B1
SMC1A	ENSG00000072501.13	2558.22830	3454.46890	-0.43330	7.87990	6.78810	HepG2	SLBP
SMC1A	ENSG00000072501.13	2028.64000	2819.55600	-0.47500	3.20540	2.16630	HepG2	SMNDC1
SMC1A	ENSG00000072501.13	3069.53440	4353.91560	-0.50430	3.20050	2.35810	HepG2	SNRNP70
SMC1A	ENSG00000072501.13	2104.47310	4213.45810	-1.00150	53.39550	51.92080	HepG2	SRFBP1
SMC1A	ENSG00000072501.13	2790.58560	2177.73420	0.35760	6.90470	6.24010	HepG2	SRSF1
SMC1A	ENSG00000072501.13	1956.18000	3224.66150	-0.72110	23.32430	21.68050	HepG2	SRSF7
SMC1A	ENSG00000072501.13	3130.08380	3658.35240	-0.22500	3.17760	2.63700	HepG2	SSB
SMC1A	ENSG00000072501.13	1445.30390	2165.41240	-0.58330	5.37620	3.65770	HepG2	SSRP1
SMC1A	ENSG00000072501.13	1825.30960	2607.91940	-0.51480	4.15410	2.66320	HepG2	STAU1
SMC1A	ENSG00000072501.13	1838.54670	2583.92190	-0.49100	2.97840	1.72810	HepG2	SUB1
SMC1A	ENSG00000072501.13	2079.59840	2636.43980	-0.34230	3.09760	2.10810	HepG2	SUPT6H
SMC1A	ENSG00000072501.13	1469.53470	2835.85140	-0.94840	14.40470	13.06800	HepG2	SUPV3L1
SMC1A	ENSG00000072501.13	2607.10710	1957.68600	0.41320	6.80850	5.99780	HepG2	TAF15
SMC1A	ENSG00000072501.13	2108.49770	3853.33970	-0.86990	16.85930	15.32970	HepG2	TARDBP
SMC1A	ENSG00000072501.13	1005.96820	1900.74580	-0.91800	13.51390	11.65080	HepG2	TFIP11
SMC1A	ENSG00000072501.13	1241.69080	2487.92420	-1.00260	27.40520	26.13290	HepG2	TIAL1
SMC1A	ENSG00000072501.13	1540.93220	2510.10770	-0.70390	21.17820	19.80080	HepG2	TRIM56
SMC1A	ENSG00000072501.13	2680.18880	3519.65950	-0.39310	4.72170	3.54700	HepG2	TUFM
SMC1A	ENSG00000072501.13	2149.89820	3725.66280	-0.79320	10.53020	8.85850	HepG2	UBE2L3
SMC1A	ENSG00000072501.13	830.29700	1675.19550	-1.01260	16.18500	14.38440	HepG2	UCHL5
SMC1A	ENSG00000072501.13	2525.12950	3728.26560	-0.56210	17.18490	15.73610	HepG2	UPF1
SMC1A	ENSG00000072501.13	1508.92820	2596.65910	-0.78310	7.12290	5.46690	HepG2	UPF2
SMC1A	ENSG00000072501.13	2987.14100	3599.50080	-0.26900	4.47250	3.74040	HepG2	UTP3
SMC1A	ENSG00000072501.13	1940.09720	3040.76990	-0.64830	5.23840	3.80460	HepG2	XRCC6
SMC1A	ENSG00000072501.13	1591.53880	2791.58600	-0.81070	12.20860	10.70770	HepG2	XRN2
SMC1A	ENSG00000072501.13	2180.90680	2889.32050	-0.40580	9.78240	8.64900	HepG2	ZC3H8
SMC1A	ENSG00000072501.13	1753.00800	4100.38480	-1.22590	92.20730	90.24810	HepG2	ZNF622
SMC1A	ENSG00000072501.13	1936.67750	2762.53220	-0.51240	3.71820	2.20050	HepG2	ZRANB2
SMC1A	ENSG00000072501.13	9989.81300	12579.25460	-0.33250	8.07050	7.17210	K562	AGGF1
SMC1A	ENSG00000072501.13	11404.47570	13822.50220	-0.27740	2.64810	1.69240	K562	AKAP8
SMC1A	ENSG00000072501.13	9040.69340	13089.23610	-0.53390	8.45870	7.25370	K562	AKAP8L
SMC1A	ENSG00000072501.13	11090.53600	13840.02200	-0.31950	3.77490	2.29510	K562	APOBEC3C
SMC1A	ENSG00000072501.13	6601.00860	11521.54420	-0.80360	16.91680	15.62720	K562	AQR
SMC1A	ENSG00000072501.13	10862.55730	13733.66800	-0.33840	5.88420	4.49170	K562	ATP5C1
SMC1A	ENSG00000072501.13	6112.41860	7167.30620	-0.22970	4.07700	2.89380	K562	BCLAF1
SMC1A	ENSG00000072501.13	5874.93140	8986.81810	-0.61320	9.13800	7.50340	K562	BOP1
SMC1A	ENSG00000072501.13	8159.26620	10403.39840	-0.35050	3.01170	1.52010	K562	BUD13
SMC1A	ENSG00000072501.13	12831.23910	15033.05690	-0.22850	2.47990	1.37650	K562	CCDC124
SMC1A	ENSG00000072501.13	12451.89620	17267.83960	-0.47170	2.57990	1.56200	K562	CNOT7
SMC1A	ENSG00000072501.13	11403.36540	13745.51670	-0.26950	4.55330	3.10860	K562	CPEB4
SMC1A	ENSG00000072501.13	7628.49740	9555.63040	-0.32500	4.11650	3.15940	K562	CPSF6
SMC1A	ENSG00000072501.13	4458.45200	5437.46990	-0.28640	4.17450	2.84150	K562	CSTF2
SMC1A	ENSG00000072501.13	8848.29150	10032.49770	-0.18120	2.45580	1.31880	K562	DDX21
SMC1A	ENSG00000072501.13	4554.93540	5865.81630	-0.36490	4.63120	3.23280	K562	DDX3X
SMC1A	ENSG00000072501.13	11201.32780	14223.74710	-0.34460	8.02830	6.99550	K562	DDX47
SMC1A	ENSG00000072501.13	4997.44920	5947.10470	-0.25100	3.27940	1.82720	K562	DDX6
SMC1A	ENSG00000072501.13	12017.72150	14085.25980	-0.22900	3.21300	2.26020	K562	DKC1
SMC1A	ENSG00000072501.13	4638.28370	7111.50070	-0.61660	9.02770	7.29270	K562	EFTUD2
SMC1A	ENSG00000072501.13	5303.59360	6442.84790	-0.28070	4.82610	3.20790	K562	EIF2S1
SMC1A	ENSG00000072501.13	8370.27040	9557.91900	-0.19140	2.35570	1.68330	K562	EIF2S2
SMC1A	ENSG00000072501.13	5253.57150	7614.22900	-0.53540	5.11790	3.65710	K562	EIF3D
SMC1A	ENSG00000072501.13	4767.06420	6128.23870	-0.36240	3.99050	3.00690	K562	EIF4A3
SMC1A	ENSG00000072501.13	13428.78460	15684.69350	-0.22400	3.14610	2.14750	K562	EIF4G2
SMC1A	ENSG00000072501.13	8651.63390	10736.05340	-0.31140	2.55850	1.74420	K562	FIP1L1
SMC1A	ENSG00000072501.13	6247.27410	9722.50280	-0.63810	9.67480	8.02720	K562	FMR1
SMC1A	ENSG00000072501.13	5566.55310	8240.64400	-0.56600	7.20690	5.65650	K562	FTO
SMC1A	ENSG00000072501.13	4259.24600	5353.28320	-0.32980	4.39200	2.65380	K562	FUS
SMC1A	ENSG00000072501.13	5598.19690	7129.75890	-0.34890	2.92400	1.45690	K562	GEMIN5
SMC1A	ENSG00000072501.13	6527.97070	9123.32680	-0.48290	7.20220	5.92090	K562	GPKOW
SMC1A	ENSG00000072501.13	7147.93430	12737.10530	-0.83340	22.08860	19.84040	K562	GRSF1
SMC1A	ENSG00000072501.13	4779.59980	6908.76350	-0.53150	9.17230	8.13640	K562	HNRNPC
SMC1A	ENSG00000072501.13	10916.98010	12854.25820	-0.23570	2.26730	1.31960	K562	HNRNPL
SMC1A	ENSG00000072501.13	6831.85470	8830.10900	-0.37020	2.87810	1.92630	K562	HNRNPM
SMC1A	ENSG00000072501.13	6741.32910	9867.57160	-0.54970	13.72140	11.78750	K562	HNRNPU
SMC1A	ENSG00000072501.13	9396.78290	14556.43770	-0.63140	8.83520	7.42980	K562	HSPD1
SMC1A	ENSG00000072501.13	11796.41720	13891.12100	-0.23580	2.21360	1.48520	K562	KIF1C
SMC1A	ENSG00000072501.13	4742.65510	7790.04860	-0.71590	7.65610	6.01680	K562	KRR1
SMC1A	ENSG00000072501.13	6650.57440	7830.93030	-0.23570	2.05620	1.32700	K562	MAGOH
SMC1A	ENSG00000072501.13	6814.56450	8905.36340	-0.38610	4.95750	3.76440	K562	METAP2
SMC1A	ENSG00000072501.13	13630.43400	16718.47260	-0.29460	2.67260	1.56410	K562	MSI2
SMC1A	ENSG00000072501.13	9577.16630	11189.34770	-0.22450	4.21140	3.23180	K562	MTPAP
SMC1A	ENSG00000072501.13	5557.97920	7007.22730	-0.33430	2.75050	1.46340	K562	NONO
SMC1A	ENSG00000072501.13	10817.56250	12432.18790	-0.20070	5.97260	4.93550	K562	NSUN2
SMC1A	ENSG00000072501.13	5412.69700	6967.33470	-0.36430	4.27040	3.04950	K562	PCBP2
SMC1A	ENSG00000072501.13	9249.92900	11239.06080	-0.28100	2.07880	1.35780	K562	PCBP3
SMC1A	ENSG00000072501.13	7158.11120	8620.79260	-0.26820	3.09000	2.24110	K562	POLR2G
SMC1A	ENSG00000072501.13	8110.44350	12186.89790	-0.58750	8.93700	7.25060	K562	PPIG
SMC1A	ENSG00000072501.13	3854.32720	6920.30980	-0.84440	16.49650	14.64580	K562	PRPF8
SMC1A	ENSG00000072501.13	4658.87720	6194.27710	-0.41100	5.27220	3.97050	K562	PSIP1
SMC1A	ENSG00000072501.13	13992.14470	17113.30520	-0.29050	2.93420	2.09340	K562	PUF60
SMC1A	ENSG00000072501.13	13716.25440	17835.06250	-0.37880	8.03270	6.36860	K562	PUM2
SMC1A	ENSG00000072501.13	9568.87780	12981.27860	-0.44000	5.01720	4.31370	K562	PUS1
SMC1A	ENSG00000072501.13	10541.26240	12648.01200	-0.26290	3.71350	3.04090	K562	RBM15
SMC1A	ENSG00000072501.13	5385.20020	7294.73230	-0.43790	5.35700	4.14210	K562	RBM22
SMC1A	ENSG00000072501.13	3605.40160	7049.08980	-0.96730	16.27230	14.26990	K562	RPS19
SMC1A	ENSG00000072501.13	5681.09170	6952.80020	-0.29140	2.38340	1.46280	K562	RPS3
SMC1A	ENSG00000072501.13	7149.62720	11134.05790	-0.63900	2.40210	1.31440	K562	SF1
SMC1A	ENSG00000072501.13	9049.25030	12267.66770	-0.43900	10.49150	8.97830	K562	SF3A3
SMC1A	ENSG00000072501.13	6835.97330	8676.42040	-0.34400	2.48830	1.56790	K562	SF3B1
SMC1A	ENSG00000072501.13	8632.92190	13579.09620	-0.65350	2.59150	1.34910	K562	SFPQ
SMC1A	ENSG00000072501.13	5132.84360	7458.86930	-0.53920	9.94320	8.61850	K562	SRSF1
SMC1A	ENSG00000072501.13	4985.87020	6700.31150	-0.42640	3.84430	2.63000	K562	SUPV3L1
SMC1A	ENSG00000072501.13	5501.83720	7548.52560	-0.45630	5.22340	4.23510	K562	TARDBP
SMC1A	ENSG00000072501.13	4688.17470	5957.94810	-0.34580	2.88880	1.93210	K562	TIAL1
SMC1A	ENSG00000072501.13	4904.57240	7091.47670	-0.53200	6.64080	4.98580	K562	UCHL5
SMC1A	ENSG00000072501.13	10553.86590	13182.12690	-0.32080	8.17900	7.02440	K562	UPF1
SMC1A	ENSG00000072501.13	9570.09910	11279.50610	-0.23710	2.34150	1.53530	K562	WDR3
SMC1A	ENSG00000072501.13	5638.96830	7221.14050	-0.35680	3.24000	1.89580	K562	XRN2
SMC1A	ENSG00000072501.13	10557.50860	12978.86590	-0.29790	3.00050	2.09680	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SMC1A is not available on ENCORE database.

10 RBPs can affect the splicing of SMC1A :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SMC1A	ENSG00000072501.13	chrX	-	53448844	53448990			53441929	53442118	53449440	53449618	0.11900	0.00000	0.00012	included	K562	PRPF8
SE	SMC1A	ENSG00000072501.13	chrX	-	53441706	53441819			53440181	53440385	53449440	53449603	0.11500	0.00024	0.05484	included	K562	WDR3
SE	SMC1A	ENSG00000072501.13	chrX	-	53407938	53408008			53407540	53407651	53409152	53409304	-0.08800	0.00038	0.00899	excluded	HepG2	U2AF1
SE	SMC1A	ENSG00000072501.13	chrX	-	53407938	53408008			53407535	53407651	53409152	53409304	-0.06000	0.01107	0.09887	excluded	HepG2	U2AF2
SE	SMC1A	ENSG00000072501.13	chrX	-	53441706	53441819			53440181	53440385	53449440	53449603	0.13800	0.00523	0.04821	included	K562	AQR
SE	SMC1A	ENSG00000072501.13	chrX	-	53441929	53442118			53441706	53441819	53449440	53449677	-0.08000	0.00015	0.01727	excluded	K562	SUPV3L1
SE	SMC1A	ENSG00000072501.13	chrX	-	53448844	53448990			53441929	53442118	53449440	53449603	0.05500	0.00202	0.08464	included	K562	EFTUD2
SE	SMC1A	ENSG00000072501.13	chrX	-	53407938	53408037			53407540	53407651	53409152	53409304	-0.12600	0.00617	0.09477	excluded	K562	U2AF1
SE	SMC1A	ENSG00000072501.13	chrX	-	53426510	53426652			53423391	53423537	53431943	53432081	-0.05900	0.00110	0.03294	excluded	HepG2	SF3A3
SE	SMC1A	ENSG00000072501.13	chrX	-	53407938	53408008			53407540	53407651	53409152	53409304	-0.24300	0.00000	0.00000	excluded	K562	U2AF2
SE	SMC1A	ENSG00000072501.13	chrX	-	53426510	53426652			53423391	53423537	53430497	53430635	-0.05100	0.00000	0.00003	excluded	K562	U2AF2
SE	SMC1A	ENSG00000072501.13	chrX	-	53441706	53441819			53440181	53440385	53449440	53449677	-0.15500	0.00169	0.05997	excluded	K562	PTBP1
SE	SMC1A	ENSG00000072501.13	chrX	-	53448844	53448990			53441929	53442118	53449440	53449603	0.13900	0.00004	0.00125	included	K562	HNRNPC
A3SS	SMC1A	ENSG00000072501.13	chrX	-	53430708	53430887			53430708	53430825	53431943	53432081	0.10200	0.00000	0.00000	longer	K562	AQR
MXE	SMC1A	ENSG00000072501.13	chrX	-	53441929	53442090	53448844	53448990	53441706	53441819	53449440	53449618	0.07400	0.00434	0.06731	1included	K562	PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SMC1A

General Information

Functions

Localization

Domains (AlphaFold: SMC1A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SMC1A is not avaliable on ENCORE database.

43 proteins are bound to SMC1A RNA:

eCLIP assay for SMC1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SMC1A is not available on ENCORE database.

145 RBPs can affect the gene expression of SMC1A :

The Knockdown/knockout RNA-Seq assay for SMC1A is not available on ENCORE database.

10 RBPs can affect the splicing of SMC1A :

The Knockdown/knockout RNA-Seq assay for SMC1A is not avaliable on ENCORE database.