NT5C3A

General Information

Gene Name       : NT5C3A
Gene ID             : ENSG00000122643.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NT5C3A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NT5C3AENSG00000122643.1972.4659.9666.21ENCSR000AEF
HepG2NT5C3AENSG00000122643.199.6422.0315.84ENCSR985KAT
K562NT5C3AENSG00000122643.1930.1626.9328.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NT5C3A is not avaliable on ENCORE database.



Proteins bound to RNA
  • NT5C3A RNA is bound by 11 proteins.  







eCLIP assay for NT5C3A is not avaliable on ENCORE database.





11 proteins are bound to NT5C3A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr73306364233063716-3'-UTR,CDS,intron-Distal,intron-Proximal5.385597.49561HepG2BCLAF1
chr73306643133066529-3'-UTR,CDS,intron-Distal,intron-Proximal4.437444.45558HepG2GRWD1
chr73305402133054058-3'-UTR,intron-Distal,intron-Proximal4.046183.02250K562YBX3
chr73306167533061712-3'-UTR,CDS,intron-Distal,intron-Proximal4.381363.89826HepG2BCLAF1
chr73306643133066521-3'-UTR,CDS,intron-Distal3.015705.69345HepG2BCLAF1
chr73307554933075598-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.041143.53690K562ZNF622
chr73305388733053939-3'-UTR,intron-Distal3.310633.37083K562UPF1
chr73305709133057196-3'-UTR,CDS,intron-Distal3.003953.21309HepG2GRWD1
chr73305708133057185-3'-UTR,CDS,intron-Distal3.902903.45590K562GRWD1
chr73305707933057160-3'-UTR,CDS,intron-Distal3.031834.61701K562ZNF622
chr73310214233102219-CDS,intron-Distal4.401033.25089HepG2AQR
chr73310213333102167-intron-Distal3.649865.35619K562AQR
chr73310199033102073-intron-Distal4.189403.76710K562NONO
chr73308874433088794-intron-Distal4.270074.10688K562KHSRP
chr73310216733102180-intron-Distal3.118604.38107K562AQR
chr73310193833102146-intron-Distal5.3394318.74293HepG2EFTUD2
chr73308872333088744-intron-Distal4.622136.73684K562KHSRP
chr73305949233059575-intron-Distal4.087283.55640HepG2QKI
chr73310205433102097-intron-Distal3.636205.17182HepG2RBM22
chr73306128633061367-intron-Distal,intron-Proximal3.154683.29213HepG2KHSRP
chr73308857833088723-intron-Distal4.9405817.47399K562KHSRP
chr73310189333101968-intron-Distal4.817064.47382K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NT5C3A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NT5C3A is not available on ENCORE database.

  • 53 RBPs can affect the levels of NT5C3A.  








The Knockdown/knockout RNA-Seq assay for NT5C3A is not available on ENCORE database.





53 RBPs can affect the gene expression of NT5C3A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NT5C3AENSG00000122643.14402.22300641.16860-0.672704.503803.84690HepG2AKAP1
NT5C3AENSG00000122643.14409.24710522.89950-0.353602.502901.84430HepG2AUH
NT5C3AENSG00000122643.14229.90870371.61660-0.692803.167102.16380HepG2BCCIP
NT5C3AENSG00000122643.14226.08710311.84810-0.464002.913302.23520HepG2CKAP4
NT5C3AENSG00000122643.14282.69510519.35650-0.877505.335604.27130HepG2CNOT7
NT5C3AENSG00000122643.14429.52200582.12140-0.438604.483403.57600HepG2DAZAP1
NT5C3AENSG00000122643.14204.55580280.24800-0.454202.662502.02110HepG2DNAJC2
NT5C3AENSG00000122643.14293.98890507.19090-0.786806.049805.19130HepG2EIF2S1
NT5C3AENSG00000122643.14380.25490560.49740-0.559703.453102.74020HepG2EIF4A3
NT5C3AENSG00000122643.14264.49540545.73850-1.045007.779306.65580HepG2EIF4B
NT5C3AENSG00000122643.14482.50770600.35080-0.315302.046701.51280HepG2ETF1
NT5C3AENSG00000122643.14409.55900304.799000.426102.365601.59390HepG2EWSR1
NT5C3AENSG00000122643.14397.52480565.54310-0.508603.176402.43570HepG2FXR1
NT5C3AENSG00000122643.14297.36530524.61120-0.819006.510405.51300HepG2G3BP1
NT5C3AENSG00000122643.14263.52850360.03610-0.450201.958301.41380HepG2GPKOW
NT5C3AENSG00000122643.14209.18320480.75940-1.200509.703407.63640HepG2GRSF1
NT5C3AENSG00000122643.14157.06740285.51290-0.862205.336804.48070HepG2HNRNPA1
NT5C3AENSG00000122643.14381.12290544.07570-0.513602.675601.85890HepG2LARP4
NT5C3AENSG00000122643.14828.04800474.669100.802704.853503.65080HepG2PABPC1
NT5C3AENSG00000122643.14274.10100194.795600.492602.675901.91320HepG2PRPF4
NT5C3AENSG00000122643.14294.54150544.18490-0.8856010.708109.76690HepG2PTBP1
NT5C3AENSG00000122643.14436.55580584.46740-0.421003.169202.45090HepG2PUM2
NT5C3AENSG00000122643.14212.53870317.72050-0.580004.123303.39770HepG2PUS1
NT5C3AENSG00000122643.14542.04350346.098600.647102.883302.16560HepG2RAVER1
NT5C3AENSG00000122643.14435.58470605.60390-0.475403.938603.31430HepG2NELFE
NT5C3AENSG00000122643.14451.67590564.07710-0.320602.058501.51660HepG2RECQL
NT5C3AENSG00000122643.14267.70840374.31760-0.483602.044201.34970HepG2RPS2
NT5C3AENSG00000122643.14331.32700521.44270-0.654303.862802.91720HepG2RPS3A
NT5C3AENSG00000122643.14236.24300340.07860-0.525602.701202.00340HepG2SF3B1
NT5C3AENSG00000122643.14260.12070566.52000-1.1229016.3841015.12780HepG2SF3B4
NT5C3AENSG00000122643.14436.35660528.26820-0.275801.948201.34100HepG2SLBP
NT5C3AENSG00000122643.14572.88390378.400000.598202.867802.07180HepG2SNRNP70
NT5C3AENSG00000122643.14395.51930543.99720-0.459904.066203.33390HepG2SRSF5
NT5C3AENSG00000122643.14503.87330323.413800.639603.113801.83140HepG2SUB1
NT5C3AENSG00000122643.14484.44350618.69890-0.352903.208302.54820HepG2SUCLG1
NT5C3AENSG00000122643.14211.31510334.93080-0.664503.882203.03960HepG2TARDBP
NT5C3AENSG00000122643.14435.58380291.528200.579204.869504.11180HepG2UTP3
NT5C3AENSG00000122643.14260.80090332.09540-0.348601.981101.49750HepG2ZNF622
NT5C3AENSG00000122643.14722.00330493.677900.548304.602403.03890K562AARS
NT5C3AENSG00000122643.14732.02230944.12800-0.367102.585401.41150K562ABCF1
NT5C3AENSG00000122643.14751.16110977.43080-0.379902.928902.25600K562AKAP8L
NT5C3AENSG00000122643.14698.928101106.67870-0.663005.572904.79040K562AQR
NT5C3AENSG00000122643.14418.20450656.05090-0.649604.866602.87590K562CKAP4
NT5C3AENSG00000122643.14651.993901113.90100-0.772704.921903.45420K562CNOT7
NT5C3AENSG00000122643.141770.532001030.253900.7811019.9679018.37080K562DDX47
NT5C3AENSG00000122643.14793.88620572.419000.471802.165601.45530K562EIF3G
NT5C3AENSG00000122643.14408.07660547.67210-0.424502.466901.60520K562FTO
NT5C3AENSG00000122643.141037.85650594.254300.804407.125805.87810K562G3BP2
NT5C3AENSG00000122643.14433.82440606.37440-0.483103.386202.51010K562GPKOW
NT5C3AENSG00000122643.14711.911201034.69230-0.539405.632904.55070K562GRSF1
NT5C3AENSG00000122643.141290.09320920.105800.487504.464103.45870K562HSPD1
NT5C3AENSG00000122643.14748.303901070.13140-0.516102.470201.31930K562PABPC1
NT5C3AENSG00000122643.141734.994801418.171700.290802.492201.48350K562PUM1
NT5C3AENSG00000122643.14541.95880969.42060-0.8389010.143109.14890K562PUS1
NT5C3AENSG00000122643.14700.86660944.49010-0.430404.336203.61050K562RBM15
NT5C3AENSG00000122643.14841.02570521.526800.689306.062204.84860K562RPS19
NT5C3AENSG00000122643.14437.36380618.30740-0.499502.821101.95720K562SF3B4
NT5C3AENSG00000122643.14392.44850718.68810-0.872909.748208.29050K562TARDBP
NT5C3AENSG00000122643.14373.69950494.91670-0.405302.323201.46770K562TRIM56
NT5C3AENSG00000122643.14345.88830524.66200-0.601103.056701.98160K562UCHL5
NT5C3AENSG00000122643.14945.46940665.554900.506403.492402.55040K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NT5C3A is not available on ENCORE database.





18 RBPs can affect the splicing of NT5C3A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENT5C3AENSG00000122643.14chr7-330552813305548233054128330544433305705033057213-0.199000.000000.00000excludedK562SRSF1
SENT5C3AENSG00000122643.14chr7-330592463305933633057050330572133306088333060969-0.107000.000290.00763excludedK562SF3B4
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.356000.000000.00005includedK562WDR3
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.394000.000430.01000includedHepG2U2AF1
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.294000.000000.00132includedK562FMR1
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.281000.000000.00195includedK562WDR43
SENT5C3AENSG00000122643.14chr7-330755453307560033066428330665273310217933102408-0.209000.011130.09927excludedHepG2U2AF2
SENT5C3AENSG00000122643.14chr7-330592463305933633057050330572133306088333060969-0.116000.000000.00000excludedK562AQR
SENT5C3AENSG00000122643.14chr7-330592463305933633057050330572133306088333060969-0.165000.000010.00041excludedK562PUS1
SENT5C3AENSG00000122643.14chr7-330755453307560033066428330665273310217933102408-0.279000.000040.00123excludedK562PUS1
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.326000.000000.00000includedK562U2AF1
SENT5C3AENSG00000122643.14chr7-330592463305933633057050330572133306088333060969-0.103000.000090.00302excludedK562U2AF1
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.252000.000800.05652includedHepG2HNRNPL
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.307000.000030.01383includedHepG2NOL12
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.320000.000010.00328includedK562UPF1
SENT5C3AENSG00000122643.14chr7-330592463305933633057050330572133306088333060969-0.130000.000010.00047excludedK562U2AF2
SENT5C3AENSG00000122643.14chr7-330755453307560033066428330665273310217933102408-0.207000.000460.01492excludedK562RBM15
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.323000.000010.00146includedK562CPSF6
SENT5C3AENSG00000122643.14chr7-330755453307560033066428330665273310217933102408-0.218000.000190.01104excludedK562PTBP1
SENT5C3AENSG00000122643.14chr7-3307554533075600330664283306652733102179331024080.308000.000040.00113includedK562HNRNPC
A3SSNT5C3AENSG00000122643.14chr7-3305528133055522330552813305548233057050330572340.153000.000000.00000longerK562AQR
A3SSNT5C3AENSG00000122643.14chr7-3305705033057277330570503305721333059246330593360.161000.000000.00000longerK562AQR
A3SSNT5C3AENSG00000122643.14chr7-3305528133055522330552813305548233057050330572130.096000.000040.00986longerK562UTP18
MXENT5C3AENSG00000122643.14chr7-3306365033063720330664283306652733056815330572133307554533075595-0.171000.000120.003872includedK562PUS1
MXENT5C3AENSG00000122643.14chr7-33059246330593363306088333060987330570503305721333061664330617110.132000.000000.000001includedK562AQR
MXENT5C3AENSG00000122643.14chr7-33059246330593363306088333060954330570503305721333061664330617110.103000.000000.000001includedK562AQR
MXENT5C3AENSG00000122643.14chr7-33063650330637203306642833066527330616643306171133075545330756000.259000.002620.092611includedHepG2DDX6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NT5C3A is not avaliable on ENCORE database.