MRPL55

General Information

Gene Name       : MRPL55
Gene ID             : ENSG00000162910.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: MRPL55)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MRPL55ENSG00000162910.185.5528.6817.11ENCSR000AEF
HepG2MRPL55ENSG00000162910.1878.8414.7646.80ENCSR985KAT
K562MRPL55ENSG00000162910.1867.2254.4760.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MRPL55 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MRPL55 RNA is bound by 12 proteins.  







eCLIP assay for MRPL55 is not avaliable on ENCORE database.





12 proteins are bound to MRPL55 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1228295939228296015-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.695875.56813HepG2PPIG
chr1228295880228295965-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.879598.70001HepG2PRPF8
chr1228295986228296034-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.114917.15688K562BUD13
chr1228295991228296049-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.969066.93060K562EFTUD2
chr1228295987228296054-3'-UTR,5'-UTR,intron-Distal,intron-Proximal5.3828718.01977HepG2EFTUD2
chr1228296633228296692-5'-UTR,intron-Distal,intron-Proximal5.3268813.10316HepG2EFTUD2
chr1228296073228296098-5'-UTR,intron-Distal,intron-Proximal5.147134.24111K562EFTUD2
chr1228296611228296699-5'-UTR,intron-Distal,intron-Proximal4.8739523.46466HepG2PRPF8
chr1228295508228295597-CDS,intron-Distal,intron-Proximal5.6095211.37059K562BUD13
chr1228295550228295607-CDS,intron-Distal,intron-Proximal3.106763.23253K562SMNDC1
chr1228295401228295430-CDS,intron-Distal,intron-Proximal3.274318.19758K562YBX3
chr1228295872228295937-CDS,intron-Distal,intron-Proximal4.747598.52787K562AQR
chr1228294464228294512-CDS,intron-Distal4.053263.72779HepG2LARP4
chr1228295430228295519-CDS,intron-Distal,intron-Proximal3.635418.75080K562YBX3
chr1228295514228295635-CDS,intron-Distal,intron-Proximal5.550937.36555K562SF3B4
chr1228295530228295569-CDS,intron-Distal,intron-Proximal3.020763.00343HepG2GRWD1
chr1228295510228295595-CDS,intron-Distal,intron-Proximal3.142805.68089HepG2BUD13
chr1228294554228294604-CDS,intron-Distal3.453163.05161HepG2PPIG
chr1228295774228295854-CDS,intron-Distal,intron-Proximal5.1570339.90988HepG2EFTUD2
chr1228295580228295620-intron-Distal,intron-Proximal4.025043.01266HepG2SF3B4
chr1228295800228295893-intron-Distal,intron-Proximal4.8885911.56048K562EFTUD2
chr1228295622228295669-intron-Distal,intron-Proximal5.344746.91793HepG2RBM5
chr1228295854228295913-intron-Distal,intron-Proximal7.0600424.82209HepG2EFTUD2
chr1228295868228295928-intron-Distal,intron-Proximal3.014694.63797K562PRPF8
chr1228295861228295911-intron-Distal,intron-Proximal3.939586.34541K562BUD13
chr1228295859228295916-intron-Distal,intron-Proximal3.797173.82121HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MRPL55 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MRPL55 is not available on ENCORE database.

  • 69 RBPs can affect the levels of MRPL55.  








The Knockdown/knockout RNA-Seq assay for MRPL55 is not available on ENCORE database.





69 RBPs can affect the gene expression of MRPL55 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MRPL55ENSG00000162910.14378.86780188.925201.003803.289502.26970HepG2BCCIP
MRPL55ENSG00000162910.14424.03080181.488501.2242012.3960011.25060HepG2BOP1
MRPL55ENSG00000162910.14445.31320318.071200.485402.221901.35670HepG2CCAR1
MRPL55ENSG00000162910.14230.86770154.045900.583602.977801.92070HepG2YBX3
MRPL55ENSG00000162910.14224.96800145.889600.624703.012601.99410HepG2DHX30
MRPL55ENSG00000162910.14423.37240335.435100.335801.961901.37640HepG2DKC1
MRPL55ENSG00000162910.14210.90240151.258300.479502.083901.46490HepG2DNAJC21
MRPL55ENSG00000162910.14261.84810149.927300.804406.399205.46630HepG2DNAJC2
MRPL55ENSG00000162910.14295.98230188.818000.648402.823102.17650HepG2GPKOW
MRPL55ENSG00000162910.14227.48690152.707400.574902.496301.87980HepG2HNRNPA1
MRPL55ENSG00000162910.14357.57030277.415000.366102.285201.66440HepG2HNRNPL
MRPL55ENSG00000162910.14292.51320180.196000.698803.264302.58730HepG2HNRNPLL
MRPL55ENSG00000162910.14263.32420168.737200.642004.107403.38060HepG2HNRNPU
MRPL55ENSG00000162910.14323.53320226.816200.512302.993402.24250HepG2IGF2BP1
MRPL55ENSG00000162910.14287.59180173.641000.727803.316201.85180HepG2ILF3
MRPL55ENSG00000162910.14508.38150320.521600.665403.672902.91770HepG2MAGOH
MRPL55ENSG00000162910.14281.32810162.828700.788803.345502.36420HepG2PABPC1
MRPL55ENSG00000162910.14288.43840150.499800.938407.878806.68770HepG2PPIL4
MRPL55ENSG00000162910.14460.78670288.274400.676605.360104.56500HepG2PUF60
MRPL55ENSG00000162910.1499.66170203.03200-1.026602.312501.66440HepG2RAVER1
MRPL55ENSG00000162910.14312.70010179.026300.804504.296303.29950HepG2RPS3A
MRPL55ENSG00000162910.14275.51550150.267000.874507.004506.04710HepG2SAFB2
MRPL55ENSG00000162910.14521.09960369.462300.496002.669602.00790HepG2SF3A3
MRPL55ENSG00000162910.14350.26910276.414600.341501.923801.32070HepG2SLBP
MRPL55ENSG00000162910.14333.79500504.99520-0.597305.349004.71500HepG2SRFBP1
MRPL55ENSG00000162910.14259.66580401.71310-0.629504.649104.07590HepG2SRSF1
MRPL55ENSG00000162910.14191.15570326.82660-0.773806.497805.71620HepG2SRSF9
MRPL55ENSG00000162910.14622.94980438.419200.506704.411403.79480HepG2SSB
MRPL55ENSG00000162910.14235.65320155.806400.596802.590501.53090HepG2STIP1
MRPL55ENSG00000162910.14395.36160163.953901.2698014.6710013.67930HepG2TIAL1
MRPL55ENSG00000162910.14288.72550165.425800.803406.343605.55250HepG2TRIM56
MRPL55ENSG00000162910.14204.46230304.68260-0.575502.968402.31880HepG2U2AF1
MRPL55ENSG00000162910.14226.89980109.192301.055105.052504.02110HepG2UCHL5
MRPL55ENSG00000162910.14361.58090169.185501.095603.123902.05450HepG2UPF2
MRPL55ENSG00000162910.14281.21430160.366200.810203.873702.56990HepG2XPO5
MRPL55ENSG00000162910.14410.71110182.012201.174007.177306.02200HepG2XRN2
MRPL55ENSG00000162910.14818.19900643.571400.346302.284101.76050K562AGGF1
MRPL55ENSG00000162910.14900.55790707.259100.348502.785401.79900K562AKAP8
MRPL55ENSG00000162910.141390.74580783.336800.8281011.7318010.64540K562AQR
MRPL55ENSG00000162910.14501.36000386.510000.375202.593901.66810K562BCLAF1
MRPL55ENSG00000162910.14426.35830293.225500.540003.726302.47450K562CSTF2
MRPL55ENSG00000162910.14928.492901230.35930-0.406103.242002.18760K562CELF1
MRPL55ENSG00000162910.14453.53180338.908800.420203.125401.70930K562DDX27
MRPL55ENSG00000162910.14532.53160682.69150-0.358402.987702.31240K562DDX47
MRPL55ENSG00000162910.14406.53150273.012900.574302.239901.41890K562EFTUD2
MRPL55ENSG00000162910.1483.04740211.02700-1.345407.964406.63930K562G3BP2
MRPL55ENSG00000162910.14354.65460263.400000.429102.123701.42490K562GPKOW
MRPL55ENSG00000162910.141029.77330740.977000.474702.557501.82860K562GRSF1
MRPL55ENSG00000162910.14252.94320418.84110-0.727605.577504.75950K562HNRNPC
MRPL55ENSG00000162910.14519.62180280.586100.888903.383002.20460K562IGF2BP2
MRPL55ENSG00000162910.14386.81390285.378000.438702.559401.42630K562IGF2BP3
MRPL55ENSG00000162910.14516.20970373.786300.465602.990601.38780K562LSM11
MRPL55ENSG00000162910.14765.739201094.32720-0.515103.818302.04300K562NOL12
MRPL55ENSG00000162910.14572.56070412.597700.472602.845601.39910K562NUSAP1
MRPL55ENSG00000162910.14596.98530402.154000.569804.466003.38750K562PPIG
MRPL55ENSG00000162910.14565.83400375.572600.591204.623203.40940K562PSIP1
MRPL55ENSG00000162910.14392.47000286.463700.454102.843502.17130K562PTBP1
MRPL55ENSG00000162910.14874.579401161.20960-0.409003.234602.07860K562PUM1
MRPL55ENSG00000162910.14830.93380664.016000.323402.080301.59700K562PUS1
MRPL55ENSG00000162910.14799.79130647.087600.305601.905401.39750K562RBM15
MRPL55ENSG00000162910.14467.08790274.662800.765906.738205.35790K562RBM22
MRPL55ENSG00000162910.14695.93200436.023000.674402.418801.32580K562SF1
MRPL55ENSG00000162910.14415.93540219.261400.923609.532007.89680K562SF3B4
MRPL55ENSG00000162910.14507.00470280.834300.852208.421207.19500K562SRSF1
MRPL55ENSG00000162910.14413.72690265.237900.641304.587003.17650K562SRSF5
MRPL55ENSG00000162910.14421.89930284.213100.569803.662802.84410K562TARDBP
MRPL55ENSG00000162910.14402.78240269.053400.582003.565502.29480K562TRA2A
MRPL55ENSG00000162910.14917.349001230.80080-0.424102.990101.52780K562UBE2L3
MRPL55ENSG00000162910.14857.26210717.911500.255802.205501.55970K562UPF1
MRPL55ENSG00000162910.14515.78450638.82990-0.308702.420601.62550K562WDR43
MRPL55ENSG00000162910.14705.85300882.47800-0.322202.221701.45970K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MRPL55 is not available on ENCORE database.





28 RBPs can affect the splicing of MRPL55 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMRPL55ENSG00000162910.14chr1-228296137228296722228295935228296019228296849228297000-0.403000.000180.00937excludedK562PRPF8
SEMRPL55ENSG00000162910.14chr1-2282956772282957852282953682282955702282959352282960190.064000.000240.09443includedK562SMNDC1
SEMRPL55ENSG00000162910.14chr1-2282961372282962982282959902282960192282966552282967370.226000.000130.01239includedHepG2RBM22
SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.096000.000010.00359includedK562WDR3
SEMRPL55ENSG00000162910.14chr1-228296137228296722228295935228296019228296849228297000-0.287000.001410.02747excludedHepG2U2AF1
SEMRPL55ENSG00000162910.14chr1-2282961372282962092282959352282960192282966552282967170.187000.003080.07319includedK562AKAP8L
SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.127000.000010.00084includedK562AKAP8L
SEMRPL55ENSG00000162910.14chr1-2282961372282967222282959352282960192282968492282970000.228000.000400.03857includedHepG2QKI
SEMRPL55ENSG00000162910.14chr1-228296137228296234228295990228296019228296655228296737-0.120000.000850.05156excludedHepG2AKAP1
SEMRPL55ENSG00000162910.14chr1-2282961372282962982282958142282960192282966552282967370.287000.000000.00000includedK562AQR
SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.077000.000000.00000includedK562AQR
SEMRPL55ENSG00000162910.14chr1-228296137228296234228295990228296019228296655228296737-0.348000.000000.00018excludedK562FXR1
SEMRPL55ENSG00000162910.14chr1-228295677228295838228295368228295570228295935228296019-0.090000.000000.00004excludedK562FXR1
SEMRPL55ENSG00000162910.14chr1-228295677228295838228295368228295570228295935228296019-0.059000.001510.09057excludedHepG2DDX3X
SEMRPL55ENSG00000162910.14chr1-228296137228296722228295935228296019228296849228297000-0.268000.000040.00604excludedHepG2DDX3X
SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.109000.000170.00376includedK562PUS1
SEMRPL55ENSG00000162910.14chr1-2282961372282963502282959902282960192282966552282967370.298000.001910.02899includedK562PUS1
SEMRPL55ENSG00000162910.14chr1-228295935228296019228295368228295570228296849228296984-0.087000.007200.08181excludedK562PUS1
SEMRPL55ENSG00000162910.14chr1-228295677228295838228295368228295570228295935228296019-0.060000.001840.08815excludedHepG2NCBP2
SEMRPL55ENSG00000162910.14chr1-228296655228296722228295935228296019228296849228297001-0.208000.000390.02879excludedHepG2NCBP2
SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.072000.000130.02745includedK562NSUN2
SEMRPL55ENSG00000162910.14chr1-228295677228295838228295368228295570228295935228296019-0.107000.001910.08397excludedHepG2PTBP1
SEMRPL55ENSG00000162910.14chr1-228296137228296350228295935228296019228296849228297000-0.242000.000310.06161excludedK562APOBEC3C
SEMRPL55ENSG00000162910.14chr1-228296655228296722228295935228296019228296849228297001-0.379000.000000.00000excludedHepG2MATR3
SEMRPL55ENSG00000162910.14chr1-228295677228295838228295368228295570228295935228296019-0.068000.000490.02463excludedHepG2MATR3
SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.138000.000340.05621includedHepG2RBM15
SEMRPL55ENSG00000162910.14chr1-2282961372282967222282959352282960192282968492282970000.246000.000120.02828includedHepG2RBM15
SEMRPL55ENSG00000162910.14chr1-2282961372282962342282959902282960192282966552282967370.422000.000000.00000includedK562ZRANB2
SEMRPL55ENSG00000162910.14chr1-2282956772282958032282953682282955702282959352282960190.098000.000060.00927includedK562HNRNPUL1
SEMRPL55ENSG00000162910.14chr1-228296137228296234228295990228296019228296655228296737-0.129000.001610.06936excludedHepG2PCBP1
SEMRPL55ENSG00000162910.14chr1-228295677228295838228295368228295570228295935228296019-0.151000.000000.00000excludedHepG2PCBP1
SEMRPL55ENSG00000162910.14chr1-228296137228296298228295935228296019228296849228297000-0.260000.000170.03648excludedK562EIF4G2
SEMRPL55ENSG00000162910.14chr1-2282961372282962092282959352282960192282966552282967170.308000.000300.01343includedK562UTP18
SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.096000.001040.03507includedK562UTP18
SEMRPL55ENSG00000162910.14chr1-2282961372282962092282959352282960192282966552282967170.217000.003130.06446includedK562RBM15
SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.080000.002420.05324includedK562RBM15
SEMRPL55ENSG00000162910.14chr1-2282956772282958382282953682282955702282959352282960190.181000.000000.00003includedK562AGGF1
SEMRPL55ENSG00000162910.14chr1-228296137228296722228295935228296019228296849228297000-0.268000.001200.04637excludedK562PTBP1
SEMRPL55ENSG00000162910.14chr1-228296137228296722228295935228296019228296849228297000-0.280000.000870.01724excludedK562HNRNPC
A3SSMRPL55ENSG00000162910.14chr1-2282953682282956082282953682282955702282959352282961610.065000.001410.00944longerK562AQR
A3SSMRPL55ENSG00000162910.14chr1-228295935228296043228295935228296019228296137228296318-0.102000.017670.08579shorterK562AQR
A5SSMRPL55ENSG00000162910.14chr1-2282961372282967222282966552282967222282959352282960190.294000.002690.08539longerK562PUS1
A5SSMRPL55ENSG00000162910.14chr1-2282961372282967222282966552282967222282959352282960190.285000.000000.00000longerK562AQR
A5SSMRPL55ENSG00000162910.14chr1-2282961372282967222282966552282967222282959352282960190.222000.000170.02126longerHepG2RBM22
A5SSMRPL55ENSG00000162910.14chr1-228296137228296722228296655228296722228295935228296019-0.136000.000130.08206shorterK562APOBEC3C
A5SSMRPL55ENSG00000162910.14chr1-228296137228296722228296655228296722228295935228296019-0.127000.000390.05492shorterHepG2AKAP1
A5SSMRPL55ENSG00000162910.14chr1-2282961372282967222282966552282967222282959352282960190.419000.000000.00001longerK562ZRANB2
A5SSMRPL55ENSG00000162910.14chr1-228296137228296722228296655228296722228295935228296019-0.347000.000000.00037shorterK562FXR1
A5SSMRPL55ENSG00000162910.14chr1-228296137228296722228296655228296722228295935228296019-0.139000.000500.06707shorterHepG2MATR3
A5SSMRPL55ENSG00000162910.14chr1-2282961372282967222282966552282967222282959352282960190.304000.000390.04062longerK562UTP18
RIMRPL55ENSG00000162910.14chr1-228296137228296722228296137228296175228296655228296722-0.236000.002870.05689excludedHepG2SRSF1
RIMRPL55ENSG00000162910.14chr1-2282959902282962342282959902282960192282961372282962340.346000.000710.00903includedHepG2TAF15
MXEMRPL55ENSG00000162910.14chr1-228296137228296175228296655228296722228295935228296019228296961228297000-0.218000.003200.073132includedK562RBM15
MXEMRPL55ENSG00000162910.14chr1-228296137228296350228296655228296722228295935228296019228296961228297000-0.218000.001240.037872includedK562RBM15
MXEMRPL55ENSG00000162910.14chr1-228296137228296350228296655228296722228295935228296019228296849228297000-0.252000.000080.002592includedK562PUS1
MXEMRPL55ENSG00000162910.14chr1-228296137228296350228296655228296722228295935228296019228296961228297000-0.273000.002260.038232includedK562PUS1
MXEMRPL55ENSG00000162910.14chr1-228296137228296350228296655228296722228295935228296019228296849228297000-0.229000.000000.000382includedK562AGGF1
MXEMRPL55ENSG00000162910.14chr1-2282961372282961752282966552282967222282959352282960192282969612282970000.394000.000000.000191includedK562FXR1
MXEMRPL55ENSG00000162910.14chr1-2282961372282963502282966552282967222282959352282960192282969612282970000.370000.000000.000291includedK562FXR1
MXEMRPL55ENSG00000162910.14chr1-228296137228296175228296655228296722228295935228296019228296961228297000-0.204000.000370.003782includedK562AQR
MXEMRPL55ENSG00000162910.14chr1-228296137228296350228296655228296722228295935228296019228296849228297000-0.274000.000000.000002includedK562AQR
MXEMRPL55ENSG00000162910.14chr1-228296141228296350228296655228296722228295935228296019228296849228297000-0.079000.000140.001662includedK562AQR
MXEMRPL55ENSG00000162910.14chr1-228296137228296175228296655228296722228295935228296019228296961228297000-0.295000.000260.021232includedK562UTP18
MXEMRPL55ENSG00000162910.14chr1-228296137228296350228296655228296722228295935228296019228296961228297000-0.293000.000150.014502includedK562UTP18
MXEMRPL55ENSG00000162910.14chr1-2282961372282963502282966552282967222282959352282960192282968492282970000.117000.000600.094261includedK562EIF4G2
MXEMRPL55ENSG00000162910.14chr1-228296137228296175228296655228296722228295935228296019228296961228297000-0.310000.000030.042662includedK562ZRANB2
MXEMRPL55ENSG00000162910.14chr1-228296137228296350228296655228296722228295935228296019228296849228297000-0.364000.000000.000002includedK562ZRANB2
MXEMRPL55ENSG00000162910.14chr1-2282959352282960432282961372282967222282953682282955702282968492282970000.227000.000000.000251includedK562PUM1
MXEMRPL55ENSG00000162910.14chr1-2282959352282960432282966552282967222282953682282955702282968492282970000.231000.000000.000311includedK562PUM1
MXEMRPL55ENSG00000162910.14chr1-228296141228296350228296655228296722228295935228296019228296849228297000-0.074000.001710.061322includedK562AKAP8L
MXEMRPL55ENSG00000162910.14chr1-228296137228296350228296655228296722228295935228296019228296961228297000-0.198000.001080.043912includedK562AKAP8L
MXEMRPL55ENSG00000162910.14chr1-228296137228296350228296655228296722228295935228296019228296849228297000-0.225000.000010.000862includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MRPL55 is not avaliable on ENCORE database.