UBA6-AS1

General Information

Gene Name       : UBA6-AS1
Gene ID             : ENSG00000248049.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBA6-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBA6-AS1ENSG00000248049.69.869.669.76ENCSR000AEF
HepG2UBA6-AS1ENSG00000248049.64.365.104.73ENCSR985KAT
K562UBA6-AS1ENSG00000248049.612.2311.5711.90ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBA6-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBA6-AS1 RNA is bound by 16 proteins.  







eCLIP assay for UBA6-AS1 is not avaliable on ENCORE database.





16 proteins are bound to UBA6-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr46862197168622059+intron-Distal6.7831125.63365HepG2PCBP2
chr46860937268609444+intron-Distal3.315187.76412HepG2U2AF2
chr46861750168617669+intron-Distal,intron-Proximal3.831396.73795HepG2HNRNPL
chr46862193568622055+intron-Distal4.920767.37084HepG2HNRNPK
chr46862846168628532+intron-Distal4.182274.17759HepG2QKI
chr46860821068608299+intron-Distal3.416833.32861HepG2U2AF2
chr46865606368656117+intron-Distal,intron-Proximal4.367623.77802HepG2U2AF2
chr46862872568628809+intron-Distal3.813613.22972K562TARDBP
chr46866160568661664+intron-Distal5.089798.11176K562TIA1
chr46866256568662630+intron-Distal4.031853.06150K562KHSRP
chr46861535368615470+intron-Distal5.650859.42242HepG2PCBP2
chr46863243368632493+intron-Distal4.629397.24657K562HNRNPL
chr46861542568615483+intron-Distal6.1244413.04119K562PTBP1
chr46858068568580775+intron-Distal3.497284.16915HepG2HLTF
chr46864191968641978+intron-Distal3.381543.35377HepG2QKI
chr46869640368696468+intron-Distal4.519574.30178K562PTBP1
chr46866226968662352+intron-Distal3.844636.17334HepG2U2AF2
chr46861533468615407+intron-Distal4.6944011.56570HepG2PTBP1
chr46859809068598187+intron-Distal,intron-Proximal3.714953.12651K562SAFB2
chr46863253368632584+intron-Distal3.445714.23017HepG2HNRNPL
chr46865203768652154+intron-Distal4.542244.36866HepG2ILF3
chr46866270068662803+intron-Distal3.818037.34371K562KHSRP
chr46861540768615465+intron-Distal5.5142418.40038HepG2PTBP1
chr46862198768622090+intron-Distal3.644253.70770HepG2DDX59
chr46861534968615387+intron-Distal5.068333.91475K562PTBP1
chr46877796968778035+intron-Distal4.246725.82272HepG2HNRNPL
chr46862199668622084+intron-Distal3.843993.37208HepG2ILF3
chr46861896368619047+intron-Distal3.095253.06005HepG2QKI
chr46863242968632502+intron-Distal4.5022617.21228HepG2HNRNPL
chr46858249068582560+intron-Distal,intron-Proximal4.686684.53722K562SLTM
chr46861492868615047+intron-Distal3.427724.26114HepG2HNRNPL
chr46862074768620883+intron-Distal,intron-Proximal4.790807.58902K562KHSRP
chr46869640668696517+intron-Distal5.257037.79427HepG2PTBP1
chr46862211868622189+intron-Distal4.645064.57427HepG2PCBP2
chr46866234868662428+intron-Distal3.212744.10408K562KHSRP
chr46862200168622101+intron-Distal3.889215.84562K562ILF3
chr46860658468606645+intron-Distal3.720403.06411K562KHDRBS1
chr46859434868594405+intron-Proximal4.498593.89826HepG2BCLAF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBA6-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBA6-AS1 is not available on ENCORE database.

  • 51 RBPs can affect the levels of UBA6-AS1.  








The Knockdown/knockout RNA-Seq assay for UBA6-AS1 is not available on ENCORE database.





51 RBPs can affect the gene expression of UBA6-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBA6-AS1ENSG00000248049.2176.55430380.98820-1.109607.830406.98490HepG2AKAP1
UBA6-AS1ENSG00000248049.2264.74790177.515800.576602.047201.37690HepG2CALR
UBA6-AS1ENSG00000248049.2273.98580175.671200.641103.217002.48160HepG2CPSF6
UBA6-AS1ENSG00000248049.2210.89150324.28070-0.620702.589401.92220HepG2EIF4B
UBA6-AS1ENSG00000248049.2356.96390258.142000.467502.872202.02220HepG2EIF4G1
UBA6-AS1ENSG00000248049.2438.45150299.481200.549904.200503.48690HepG2ETF1
UBA6-AS1ENSG00000248049.2206.91130336.02200-0.699503.974203.15490HepG2FXR1
UBA6-AS1ENSG00000248049.2221.17620330.91180-0.581302.964202.04140HepG2G3BP2
UBA6-AS1ENSG00000248049.2290.81730211.015800.462702.525301.83900HepG2HNRNPF
UBA6-AS1ENSG00000248049.2340.52670190.033600.841405.365704.51870HepG2HNRNPLL
UBA6-AS1ENSG00000248049.2139.25070338.03060-1.279509.638008.51940HepG2MATR3
UBA6-AS1ENSG00000248049.2169.44010346.00130-1.030007.246906.24570HepG2NCBP2
UBA6-AS1ENSG00000248049.2205.44820322.56830-0.650804.855904.08720HepG2PCBP1
UBA6-AS1ENSG00000248049.2233.58150166.861100.485202.412801.68480HepG2PRPF4
UBA6-AS1ENSG00000248049.2194.42680328.21180-0.755406.288405.52900HepG2PTBP1
UBA6-AS1ENSG00000248049.2172.39130247.67810-0.522802.345501.79020HepG2PUF60
UBA6-AS1ENSG00000248049.2248.92990355.49030-0.514103.118802.46210HepG2QKI
UBA6-AS1ENSG00000248049.270.24290195.17300-1.474304.585303.69030HepG2RAVER1
UBA6-AS1ENSG00000248049.2149.88000322.61940-1.106009.567008.36900HepG2RBM25
UBA6-AS1ENSG00000248049.2173.99210365.27950-1.0700010.602609.67090HepG2NELFE
UBA6-AS1ENSG00000248049.2198.42520340.18780-0.777706.252005.37760HepG2RECQL
UBA6-AS1ENSG00000248049.2660.24790227.329001.5381024.0612022.46710HepG2RPLP0
UBA6-AS1ENSG00000248049.2225.21120341.73510-0.601604.114403.41670HepG2SF3B4
UBA6-AS1ENSG00000248049.2250.19460356.68750-0.511603.317702.81170HepG2SRSF1
UBA6-AS1ENSG00000248049.2229.67710320.57730-0.481102.807502.24340HepG2TAF15
UBA6-AS1ENSG00000248049.2220.87630294.59590-0.415502.031301.31250HepG2TIA1
UBA6-AS1ENSG00000248049.2160.92080218.67430-0.442402.068401.57680HepG2ZNF622
UBA6-AS1ENSG00000248049.2431.61750307.060600.491102.793501.60750K562AARS
UBA6-AS1ENSG00000248049.2388.10200645.13040-0.733209.068108.11680K562AGGF1
UBA6-AS1ENSG00000248049.2514.10420708.86760-0.463503.607602.44830K562AKAP8
UBA6-AS1ENSG00000248049.2490.08950671.27930-0.453903.346502.62710K562AKAP8L
UBA6-AS1ENSG00000248049.2474.49440774.60480-0.707106.331105.50440K562AQR
UBA6-AS1ENSG00000248049.2568.59700853.96100-0.586807.218205.71380K562EIF4G2
UBA6-AS1ENSG00000248049.2235.03040347.51900-0.564202.942101.99760K562FTO
UBA6-AS1ENSG00000248049.2501.38630372.737400.427702.208401.38060K562HNRNPM
UBA6-AS1ENSG00000248049.2791.68520614.344200.365802.407001.66110K562HSPD1
UBA6-AS1ENSG00000248049.2505.02720712.42370-0.496403.685002.71490K562KIF1C
UBA6-AS1ENSG00000248049.2489.80650325.401200.589904.280602.50060K562LARP7
UBA6-AS1ENSG00000248049.2398.98920511.13470-0.357402.190101.37890K562MATR3
UBA6-AS1ENSG00000248049.2406.17850559.40110-0.461802.186301.42230K562NAA15
UBA6-AS1ENSG00000248049.2359.32120498.50880-0.472304.121203.23020K562NSUN2
UBA6-AS1ENSG00000248049.2237.84590379.32200-0.673402.429601.51550K562PABPN1
UBA6-AS1ENSG00000248049.2346.36250468.97520-0.437202.199601.45830K562PCBP3
UBA6-AS1ENSG00000248049.2706.05810931.72990-0.400103.479102.56730K562PUF60
UBA6-AS1ENSG00000248049.2808.98350991.08350-0.292902.456601.45640K562PUM1
UBA6-AS1ENSG00000248049.2382.53530665.78320-0.799507.727306.86670K562PUS1
UBA6-AS1ENSG00000248049.2445.07310648.65710-0.543405.131404.34660K562RBM15
UBA6-AS1ENSG00000248049.2318.58010477.18690-0.582904.292503.21690K562RBM22
UBA6-AS1ENSG00000248049.2379.23440274.834300.464402.506301.56630K562RCC2
UBA6-AS1ENSG00000248049.2333.36870487.78340-0.549104.065503.21530K562SRSF1
UBA6-AS1ENSG00000248049.2321.75630493.69730-0.617704.568803.65480K562TARDBP
UBA6-AS1ENSG00000248049.2760.37140528.583400.524506.396505.35740K562UPF1
UBA6-AS1ENSG00000248049.2496.50980690.60200-0.476003.151301.86320K562UTP3
UBA6-AS1ENSG00000248049.2646.93280872.59910-0.431703.499902.50980K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBA6-AS1 is not available on ENCORE database.





11 RBPs can affect the splicing of UBA6-AS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBA6-AS1ENSG00000248049.2chr4+6858613968586769685670786856720268594257685944040.321000.000100.00320includedK562SRSF1
SEUBA6-AS1ENSG00000248049.2chr4+6858613968586769685670786856720268594257685944040.367000.000030.08301includedK562FUS
SEUBA6-AS1ENSG00000248049.2chr4+6858613968586769685670786856720268594257685944040.261000.000140.03964includedK562WDR3
SEUBA6-AS1ENSG00000248049.2chr4+685861396858676968567078685672026859425768594404-0.153000.002570.06434excludedK562AKAP8L
SEUBA6-AS1ENSG00000248049.2chr4+685861396858676968567078685672026859425768594404-0.235000.000550.04872excludedHepG2QKI
SEUBA6-AS1ENSG00000248049.2chr4+685861396858676968567078685672026859425768594404-0.280000.000570.01069excludedK562PUS1
SEUBA6-AS1ENSG00000248049.2chr4+685861396858676968567078685672026859425768594404-0.226000.002620.05410excludedHepG2SRSF1
SEUBA6-AS1ENSG00000248049.2chr4+685861396858676968567078685672026859425768594404-0.207000.006180.08499excludedK562U2AF2
SEUBA6-AS1ENSG00000248049.2chr4+6858613968586769685670786856720268594257685944040.245000.001710.05659includedK562HNRNPU
SEUBA6-AS1ENSG00000248049.2chr4+685861396858676968567078685672026859425768594404-0.165000.003140.06452excludedK562RBM15
SEUBA6-AS1ENSG00000248049.2chr4+6858613968586769685670786856720268594257685944040.252000.000540.09572includedK562SAFB
SEUBA6-AS1ENSG00000248049.2chr4+6858613968586769685670786856720268594257685944040.268000.000680.09759includedK562EIF3G

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBA6-AS1 is not avaliable on ENCORE database.