TXNL4A

General Information

Gene Name       : TXNL4A
Gene ID             : ENSG00000141759.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TXNL4A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TXNL4AENSG00000141759.1411.3842.8327.11ENCSR000AEF
HepG2TXNL4AENSG00000141759.14101.7683.3292.54ENCSR985KAT
K562TXNL4AENSG00000141759.1435.8431.2533.55ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TXNL4A is not avaliable on ENCORE database.



Proteins bound to RNA
  • TXNL4A RNA is bound by 17 proteins.  







eCLIP assay for TXNL4A is not avaliable on ENCORE database.





17 proteins are bound to TXNL4A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr187773378977733814-3'-UTR,CDS,intron-Distal3.650066.36657K562YBX3
chr187773371077733857-3'-UTR,CDS,intron-Distal3.914477.04834K562GRWD1
chr187773759677737682-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.5452810.95110K562PABPC4
chr187773352677733566-3'-UTR,intron-Distal,intron-Proximal,polyA_signal4.578537.06926K562PABPC4
chr187773367477733754-3'-UTR,CDS,intron-Distal4.288623.23702K562PUM1
chr187773357277733641-3'-UTR,intron-Distal5.691219.21129HepG2SUB1
chr187773375477733823-3'-UTR,CDS,intron-Distal3.208153.25529K562PUM1
chr187773369777733848-3'-UTR,CDS,intron-Distal3.6023118.98097HepG2LARP4
chr187773760877737636-3'-UTR,CDS,intron-Distal3.417807.36929K562YBX3
chr187773370077733841-3'-UTR,CDS,intron-Distal3.594819.66555K562UCHL5
chr187774848277748534-5'-UTR,intron-Distal,intron-Proximal6.038958.00105K562DDX3X
chr187774831777748496-5'-UTR,CDS,intron-Distal5.6959711.37564K562GEMIN5
chr187774844277748527-5'-UTR,intron-Distal,intron-Proximal5.563059.58481K562FTO
chr187774838177748443-5'-UTR,CDS,intron-Distal6.0632159.34036HepG2DDX3X
chr187774844377748542-5'-UTR,intron-Distal,intron-Proximal5.43937400.00000HepG2DDX3X
chr187774836277748463-5'-UTR,CDS,intron-Distal3.4617614.56165K562DDX3X
chr187774827377748357-CDS,intron-Distal3.060855.35593HepG2SRSF1
chr187774825077748362-CDS,intron-Distal3.6394012.63060K562DDX3X
chr187774825677748338-CDS,intron-Distal4.8565226.85189HepG2DDX3X
chr187774833877748381-CDS,intron-Distal5.5153614.54204HepG2DDX3X
chr187774822977748262-CDS,intron-Distal3.126544.98485HepG2PRPF8
chr187774819277748229-intron-Distal3.311715.39110HepG2PRPF8
chr187774258777742674-intron-Distal3.473176.31016HepG2HNRNPK
chr187774812877748228-intron-Distal3.711886.22597HepG2EFTUD2
chr187774568177745736-intron-Distal,intron-Proximal3.056235.97392HepG2U2AF2
chr187774813977748204-intron-Distal3.229188.46505HepG2RBM22
chr187779314577793313-intron-Distal4.311704.85626K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TXNL4A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TXNL4A is not available on ENCORE database.

  • 70 RBPs can affect the levels of TXNL4A.  








The Knockdown/knockout RNA-Seq assay for TXNL4A is not available on ENCORE database.





70 RBPs can affect the gene expression of TXNL4A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TXNL4AENSG00000141759.101128.28220751.790100.585607.121005.95860HepG2CALR
TXNL4AENSG00000141759.10718.171601014.53090-0.498403.072002.04180HepG2CCAR1
TXNL4AENSG00000141759.10589.04620876.36490-0.573204.917604.02320HepG2CPSF6
TXNL4AENSG00000141759.10676.57590502.813600.428103.852002.64680HepG2YBX3
TXNL4AENSG00000141759.10363.210901179.99020-1.6999067.5691064.93940HepG2DAZAP1
TXNL4AENSG00000141759.10489.24150614.81040-0.329601.885501.31320HepG2DDX21
TXNL4AENSG00000141759.10331.00300748.09840-1.1764013.3994011.86100HepG2DDX55
TXNL4AENSG00000141759.10760.095201007.31090-0.406302.401001.82230HepG2DDX6
TXNL4AENSG00000141759.10446.72410580.64320-0.378302.513101.48250HepG2EIF3G
TXNL4AENSG00000141759.101137.52740787.795900.529905.847004.63150HepG2EWSR1
TXNL4AENSG00000141759.10427.70550660.24910-0.626403.750102.45460HepG2FUS
TXNL4AENSG00000141759.10867.298301079.69950-0.316001.888901.31260HepG2FXR1
TXNL4AENSG00000141759.10186.479801001.41250-2.4249053.1429050.41310HepG2G3BP1
TXNL4AENSG00000141759.10768.159501084.45430-0.497506.582005.24490HepG2HNRNPA2B1
TXNL4AENSG00000141759.10751.77960948.02440-0.334602.019901.47340HepG2HNRNPLL
TXNL4AENSG00000141759.10369.08080687.03430-0.896405.146603.63150HepG2NONO
TXNL4AENSG00000141759.10425.62640577.00750-0.439002.541501.76660HepG2PRPF8
TXNL4AENSG00000141759.10702.302401064.23470-0.599709.179808.29950HepG2PTBP1
TXNL4AENSG00000141759.10992.518501184.82400-0.255501.891001.33060HepG2PUM2
TXNL4AENSG00000141759.10585.42850821.21440-0.488306.243505.38470HepG2PUS1
TXNL4AENSG00000141759.10812.466501152.64760-0.504606.167905.28720HepG2QKI
TXNL4AENSG00000141759.10675.251301099.50810-0.703409.917108.43480HepG2RBM15
TXNL4AENSG00000141759.10775.448901046.08100-0.431904.033503.23280HepG2RBM25
TXNL4AENSG00000141759.10900.522201184.41260-0.395304.703004.03230HepG2NELFE
TXNL4AENSG00000141759.10772.086701103.08040-0.514707.389206.45440HepG2RECQL
TXNL4AENSG00000141759.10709.46830490.469500.532506.526105.59900HepG2SAFB2
TXNL4AENSG00000141759.10924.207601108.05210-0.261702.385501.83110HepG2SF3B4
TXNL4AENSG00000141759.10514.811901037.25770-1.010702.894701.40780HepG2SFPQ
TXNL4AENSG00000141759.10756.650401044.07550-0.464502.338701.62300HepG2SNRNP70
TXNL4AENSG00000141759.10802.494701156.54760-0.527308.049207.33950HepG2SRSF1
TXNL4AENSG00000141759.10631.00840940.89670-0.576408.967408.07450HepG2SRSF9
TXNL4AENSG00000141759.101082.121901254.21420-0.212901.999201.45420HepG2SUCLG1
TXNL4AENSG00000141759.10836.519901039.49750-0.313402.819302.25380HepG2TAF15
TXNL4AENSG00000141759.10725.40530955.21240-0.397003.538102.59690HepG2TIA1
TXNL4AENSG00000141759.101017.84750756.220400.428505.437804.64520HepG2UTP3
TXNL4AENSG00000141759.10798.954501123.97590-0.492404.388802.82110K562ABCF1
TXNL4AENSG00000141759.10906.19640685.371400.402803.142402.54360K562AGGF1
TXNL4AENSG00000141759.10953.76860713.166100.419303.540102.79800K562AKAP8L
TXNL4AENSG00000141759.10681.155301272.44430-0.9015012.5396011.42110K562AQR
TXNL4AENSG00000141759.10498.02300627.02410-0.332302.592901.66720K562BCLAF1
TXNL4AENSG00000141759.10424.63760755.25310-0.830705.184303.97940K562BOP1
TXNL4AENSG00000141759.10480.68480782.88680-0.703706.119903.95550K562BUD13
TXNL4AENSG00000141759.10716.582501087.39700-0.601703.258502.08900K562CNOT7
TXNL4AENSG00000141759.10416.22220803.08350-0.948207.938806.59510K562CPSF6
TXNL4AENSG00000141759.101389.918301695.04520-0.286302.461401.54290K562CELF1
TXNL4AENSG00000141759.10922.17710767.379400.265002.238101.46090K562DKC1
TXNL4AENSG00000141759.10761.36980987.30880-0.374903.805002.98310K562EIF2S2
TXNL4AENSG00000141759.10447.35770817.05500-0.8690010.167308.47560K562FMR1
TXNL4AENSG00000141759.10416.20820692.50030-0.734506.492805.03340K562FTO
TXNL4AENSG00000141759.10752.62830514.892300.547605.362504.55810K562FXR1
TXNL4AENSG00000141759.10361.16500498.36910-0.464603.067401.54250K562G3BP1
TXNL4AENSG00000141759.10558.99580763.81230-0.450404.324502.90350K562GLRX3
TXNL4AENSG00000141759.10453.22960766.77330-0.758608.280906.90040K562GPKOW
TXNL4AENSG00000141759.10380.51310587.79910-0.627405.366204.56030K562HNRNPC
TXNL4AENSG00000141759.10733.74940939.00580-0.355802.756101.70440K562HNRNPL
TXNL4AENSG00000141759.101006.71020664.525100.599204.976603.68560K562HNRNPM
TXNL4AENSG00000141759.10999.59650756.826000.401303.302402.39320K562KIF1C
TXNL4AENSG00000141759.10360.44690654.66010-0.861006.471904.97870K562KRR1
TXNL4AENSG00000141759.101101.23420847.839300.377203.356902.33860K562MBNL1
TXNL4AENSG00000141759.10441.50540748.44520-0.761505.243304.01380K562METAP2
TXNL4AENSG00000141759.10636.57740803.04970-0.335203.103002.24880K562MTPAP
TXNL4AENSG00000141759.10573.88620892.25630-0.6367011.107509.75140K562NSUN2
TXNL4AENSG00000141759.10658.11840460.904100.513803.454902.61590K562PRPF8
TXNL4AENSG00000141759.10802.21730532.258400.591806.473005.49170K562PTBP1
TXNL4AENSG00000141759.101278.909401567.60670-0.293602.851701.87670K562PUM2
TXNL4AENSG00000141759.10983.02050707.221300.475003.936703.30530K562PUS1
TXNL4AENSG00000141759.10636.66930880.43530-0.467705.346004.23960K562SF3A3
TXNL4AENSG00000141759.10511.14960926.55480-0.858103.963702.28880K562SFPQ
TXNL4AENSG00000141759.10740.24310969.58560-0.389402.582901.37870K562STAU1
TXNL4AENSG00000141759.10310.16340446.18580-0.524602.893501.85220K562SUPV3L1
TXNL4AENSG00000141759.10596.40030468.662400.347602.048201.34040K562SYNCRIP
TXNL4AENSG00000141759.10336.53200506.92060-0.591003.898102.77490K562TIAL1
TXNL4AENSG00000141759.10393.11470538.71110-0.454603.053202.04940K562TRIM56
TXNL4AENSG00000141759.101293.137501695.87560-0.391203.693602.05420K562UBE2L3
TXNL4AENSG00000141759.10350.44170472.26720-0.430402.359501.42770K562UCHL5
TXNL4AENSG00000141759.10711.91030946.07860-0.410304.714003.80180K562UPF1
TXNL4AENSG00000141759.10547.66180809.52910-0.563805.696004.41900K562WDR3
TXNL4AENSG00000141759.101035.527401433.54210-0.469204.902303.70160K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TXNL4A is not available on ENCORE database.





37 RBPs can affect the splicing of TXNL4A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETXNL4AENSG00000141759.10chr18-7773671777736787777335337773385677737597777377010.067000.000000.00000includedK562SRSF1
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.119000.000000.00001includedK562FTO
SETXNL4AENSG00000141759.10chr18-777375977773770177732874777338567774823977748593-0.081000.001150.02356excludedK562SF3B4
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.069000.000000.00871includedHepG2BUD13
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.088000.000000.00000includedHepG2RBM22
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.111000.000000.00028includedK562WDR3
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.124000.000000.00000includedK562FMR1
SETXNL4AENSG00000141759.10chr18-777466017774675077737597777377017774823977748502-0.074000.000000.00000excludedHepG2HNRNPK
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.091000.000000.00000includedHepG2DDX59
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.076000.000000.00000includedHepG2U2AF2
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.115000.000000.00006includedK562METAP2
SETXNL4AENSG00000141759.10chr18-7774660177746750777376397773770177748239777485020.115000.000000.00000includedK562AQR
SETXNL4AENSG00000141759.10chr18-777375977773770177732874777338567774823977748593-0.103000.000020.00173excludedK562FXR1
SETXNL4AENSG00000141759.10chr18-7773759777737685777335657773385677748239777485020.054000.000440.04442includedHepG2SRSF7
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.133000.000020.02754includedK562KHDRBS1
SETXNL4AENSG00000141759.10chr18-777375977773770177732874777338567774823977748593-0.126000.000020.04057excludedK562EWSR1
SETXNL4AENSG00000141759.10chr18-7773671777736787777335337773385677737597777377010.071000.000000.00000includedK562SUPV3L1
SETXNL4AENSG00000141759.10chr18-7774660177746750777375977773770177748239777485810.098000.000310.03042includedK562SUPV3L1
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.085000.000110.02944includedK562MTPAP
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.086000.000090.02101includedK562NSUN2
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.112000.000000.00000includedHepG2SFPQ
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.130000.000000.02051includedK562YBX3
SETXNL4AENSG00000141759.10chr18-7774660177746750777375977773770177748239777485020.059000.000150.06078includedK562BUD13
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.100000.000000.00000includedHepG2FTO
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.131000.000010.01871includedK562ILF3
SETXNL4AENSG00000141759.10chr18-7774660177746750777375977773770177748239777485020.060000.000650.04797includedHepG2HNRNPL
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.052000.000000.00180includedHepG2RBM15
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.074000.000010.00387includedHepG2HNRNPUL1
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.099000.000000.00266includedK562PPIL4
SETXNL4AENSG00000141759.10chr18-777375977773770177732874777338567774823977748593-0.060000.000000.00000excludedHepG2SRSF1
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.072000.000000.00001includedHepG2SSB
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.081000.000000.00001includedHepG2RBFOX2
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.087000.000020.00827includedK562UPF1
SETXNL4AENSG00000141759.10chr18-777375977773770177732874777338567774823977748593-0.071000.000880.02491excludedK562AGGF1
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.126000.000000.00000includedK562CPSF6
SETXNL4AENSG00000141759.10chr18-7774660177746750777375977773770177748239777485020.089000.000200.04527includedHepG2DDX55
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.130000.000010.01305includedK562SLBP
SETXNL4AENSG00000141759.10chr18-7773671777736787777335247773385677748239777485360.104000.000390.05955includedK562ZC3H8
SETXNL4AENSG00000141759.10chr18-777466017774675077737597777377017774823977748502-0.092000.000000.00000excludedK562HNRNPK
SETXNL4AENSG00000141759.10chr18-777466017774675077737597777377017774823977748581-0.051000.000930.04075excludedHepG2HNRNPU
SETXNL4AENSG00000141759.10chr18-7774660177746750777375977773770177748239777485020.069000.000160.05785includedHepG2DROSHA
SETXNL4AENSG00000141759.10chr18-7773759777737701777328747773385677748239777485930.093000.000010.00049includedK562HNRNPC
MXETXNL4AENSG00000141759.10chr18-7773671777736787777376397773770177733524777338567774823977748536-0.097000.007320.049212includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TXNL4A is not avaliable on ENCORE database.