LARP4      eCLIP in K562

Experiment Information (Status: Released)
461461-control
Exp_UID461461
RBPARK_Exp_name
ENCODE_ACCESSIONENCSR888YTTENCSR679NKE
ENCODE_aliasgene-yeo:461gene-yeo:461-control
RBPLARP4LARP4
Cell_LineK562K562
Batch
Exp_typeeCLIPcontrol
ENCODE_Antibody_IDENCAB580XQQENCAB580XQQ
AntibodyA303-900AA303-900A
Lot_num11
crosslinking_methodultraviolet irradiationultraviolet irradiation
queried_RNP_size_range175-300175-300
Self_consistency_hg38
rescue_GRCh38
StatusReleasedReleased
ProjectENCODE3ENCODE3
ID226252




Replicate Information
Rep_UID461_INPUT461_01461_02
Exp UID461461461
Replicate_typecontrolrep1rep2
ENCODE_ACCESSIONENCLB501IGKENCLB071NBOENCLB599OBX
ENCODE_aliasgene-yeo:461_INPUTgene-yeo:461_01gene-yeo:461_02
Biosample NameK562_061215K562_061215K562_070715
Biosample_ENCODE_AccessionENCBS318IMKENCBS318IMKENCBS517UIR
Biosample_ENCODE_Aliasgene-yeo:K562_061215gene-yeo:K562_061215gene-yeo:K562_070715
Cell_LineK562K562K562
Culture_Start_Date2015-06-122015-06-122015-07-07
Culture_End_Date2015-06-302015-06-302015-08-04
Passage445




QC Stats
Experiment QC
461461-control
Self_consistency_hg38
rescue_GRCh38


Replicate QC
Rep_UID461_INPUT461_01461_02
eCT
Usable_reads
Entropy_hg38




Library-Prep Information
Rep_UID461_INPUT461_01461_02
library_size_selection_methodagarose gel extractionagarose gel extractionagarose gel extraction
strand_specificityreversereversereverse
inline_barcode_1noneA01C01
inline_barcode_2noneB06D08fixed
i5_barcode503504504
i7_barcode702701701




Sequencing Information
Rep_UID461_INPUT461_01461_02
seq_read_typepaired-endedpaired-endedpaired-ended
read_length505050
machine
flowcell
lane




File Information

GRCh38

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
GRCh38/461.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz461final_peakspeakseCLIPGRCh38


hg19

file_nameSample IDfile_formatoutput_typeassay_typeassemblygenome_annotationNote
461.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz461final_peakspeakseCLIPhg19






Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=461)