GPATCH4

General Information

Gene Name       : GPATCH4
Gene ID             : ENSG00000160818.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GPATCH4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GPATCH4ENSG00000160818.1660.5160.7560.63ENCSR000AEF
HepG2GPATCH4ENSG00000160818.1643.0145.8344.42ENCSR985KAT
K562GPATCH4ENSG00000160818.1668.4270.8969.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GPATCH4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GPATCH4 RNA is bound by 6 proteins.  







eCLIP assay for GPATCH4 is not avaliable on ENCORE database.





6 proteins are bound to GPATCH4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1156568758156568858-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.283793.12746HepG2GRWD1
chr1156566214156566261-3'-UTR,CDS,intron-Distal4.513064.78571K562UCHL5
chr1156564778156564855-3'-UTR,intron-Distal4.135629.17402K562UCHL5
chr1156564862156564954-3'-UTR,intron-Distal,intron-Proximal4.307328.13606K562UCHL5
chr1156566178156566271-3'-UTR,CDS,intron-Distal,intron-Proximal3.718564.79276K562ZNF622
chr1156564968156565038-3'-UTR,CDS,intron-Distal,intron-Proximal5.213038.43384K562UCHL5
chr1156564318156564382-3'-UTR,intron-Distal5.9156418.29995K562PABPC4
chr1156565785156565896-3'-UTR,CDS,intron-Distal,intron-Proximal3.319505.62208HepG2PRPF8
chr1156564550156564689-3'-UTR,intron-Distal4.507524.45558HepG2GRWD1
chr1156568718156568779-3'-UTR,CDS,intron-Distal,intron-Proximal4.864994.35676HepG2PRPF8
chr1156565589156565619-3'-UTR,CDS,intron-Distal3.214553.43213K562UCHL5
chr1156571192156571208-5'-UTR,CDS,intron-Distal3.517356.46344HepG2PRPF8
chr1156571156156571202-5'-UTR,CDS,intron-Distal4.801575.90930HepG2AQR
chr1156565261156565349-CDS,intron-Distal,intron-Proximal4.481327.87612K562UCHL5
chr1156565118156565239-CDS,intron-Distal,intron-Proximal5.7442310.65697K562UCHL5
chr1156571158156571192-intron-Distal3.996017.87148HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GPATCH4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GPATCH4 is not available on ENCORE database.

  • 111 RBPs can affect the levels of GPATCH4.  








The Knockdown/knockout RNA-Seq assay for GPATCH4 is not available on ENCORE database.





111 RBPs can affect the gene expression of GPATCH4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GPATCH4ENSG00000160818.121000.59140792.921300.335502.164301.32890HepG2ABCF1
GPATCH4ENSG00000160818.12763.44660518.590100.557803.513002.92250HepG2AKAP1
GPATCH4ENSG00000160818.12625.22460429.076700.543003.635002.73720HepG2ASCC1
GPATCH4ENSG00000160818.12517.95480912.13350-0.8164015.0393013.66460HepG2AUH
GPATCH4ENSG00000160818.12882.95460601.261500.554203.909002.79430HepG2BCCIP
GPATCH4ENSG00000160818.12543.22270407.656700.414102.219201.52240HepG2CIRBP
GPATCH4ENSG00000160818.12781.896801302.82850-0.736608.919307.74710HepG2CPSF6
GPATCH4ENSG00000160818.12916.38500648.659400.498406.360005.46150HepG2CELF1
GPATCH4ENSG00000160818.12403.24850591.15170-0.551902.956502.16160HepG2DDX55
GPATCH4ENSG00000160818.12897.479401479.45160-0.721104.320403.11460HepG2DDX59
GPATCH4ENSG00000160818.12213.35650345.66660-0.696105.378504.42650HepG2DNAJC21
GPATCH4ENSG00000160818.12287.31380410.20630-0.513702.715802.12860HepG2EIF2S1
GPATCH4ENSG00000160818.12820.51430601.691300.447403.997202.59600HepG2EIF2S2
GPATCH4ENSG00000160818.12491.84700347.947300.499203.010902.07200HepG2EIF3D
GPATCH4ENSG00000160818.12785.90280453.294500.793807.053606.03350HepG2EIF4A3
GPATCH4ENSG00000160818.12793.04840441.406200.845206.304805.29720HepG2EIF4B
GPATCH4ENSG00000160818.12852.96450688.085500.309802.881802.03070HepG2EIF4G1
GPATCH4ENSG00000160818.12695.23100487.785200.511104.428903.37660HepG2EWSR1
GPATCH4ENSG00000160818.12340.44320240.340700.502202.668201.89670HepG2FUBP3
GPATCH4ENSG00000160818.12894.747801476.90640-0.723007.488206.46570HepG2GPKOW
GPATCH4ENSG00000160818.12433.78070640.95960-0.563305.669104.41060HepG2HNRNPA2B1
GPATCH4ENSG00000160818.12746.379301084.51690-0.539106.425205.39490HepG2HNRNPF
GPATCH4ENSG00000160818.12576.89050429.762300.424702.465901.80460HepG2HNRNPK
GPATCH4ENSG00000160818.12743.579501409.43460-0.9226012.8378011.61300HepG2HNRNPLL
GPATCH4ENSG00000160818.12765.25530552.605000.469604.222503.07120HepG2HNRNPM
GPATCH4ENSG00000160818.12349.54180574.67980-0.717304.351102.80160HepG2HSPD1
GPATCH4ENSG00000160818.12693.892101067.94650-0.622107.767906.61070HepG2IGF2BP1
GPATCH4ENSG00000160818.12806.67930431.276200.903309.731008.55210HepG2IGF2BP2
GPATCH4ENSG00000160818.12695.16240404.806300.780002.885001.88160HepG2IGF2BP3
GPATCH4ENSG00000160818.12815.35870457.611100.833208.234707.11550HepG2MAGOH
GPATCH4ENSG00000160818.121121.03460460.156701.2845016.3215014.88440HepG2MATR3
GPATCH4ENSG00000160818.12549.55060364.166200.593602.830401.76510HepG2METAP2
GPATCH4ENSG00000160818.12758.836801437.33350-0.921508.105506.41440HepG2MTPAP
GPATCH4ENSG00000160818.12684.17600470.983300.538602.523301.91680HepG2NCBP2
GPATCH4ENSG00000160818.12557.77710419.383200.411302.174901.52940HepG2PABPC4
GPATCH4ENSG00000160818.12563.93540381.683300.563105.607804.46110HepG2PARN
GPATCH4ENSG00000160818.12759.61010415.339700.8709014.7704013.55000HepG2PCBP1
GPATCH4ENSG00000160818.12813.87700647.434000.330002.928502.13520HepG2PRPF4
GPATCH4ENSG00000160818.12781.66200505.332400.629203.679402.28360HepG2PRPF6
GPATCH4ENSG00000160818.12327.93490456.09830-0.475902.289501.55130HepG2PRPF8
GPATCH4ENSG00000160818.12626.16380422.636900.567004.810104.13160HepG2PTBP1
GPATCH4ENSG00000160818.12491.51160660.15270-0.425602.887402.28000HepG2PUF60
GPATCH4ENSG00000160818.12963.73820700.806200.459507.216906.35240HepG2PUM1
GPATCH4ENSG00000160818.12883.13700700.278800.334602.751002.08260HepG2PUM2
GPATCH4ENSG00000160818.12717.24550463.876400.628603.017202.28350HepG2RAVER1
GPATCH4ENSG00000160818.121453.94370875.327600.7320013.8679012.88540HepG2RBM22
GPATCH4ENSG00000160818.12792.20050482.464800.715306.753505.19920HepG2RBM27
GPATCH4ENSG00000160818.12733.37770470.343300.640707.684106.86260HepG2NELFE
GPATCH4ENSG00000160818.12553.02010438.080800.336002.326801.75490HepG2RECQL
GPATCH4ENSG00000160818.121558.838601168.187300.416103.873803.08720HepG2RPLP0
GPATCH4ENSG00000160818.12664.55950338.558400.9729012.1149010.93820HepG2RPS19
GPATCH4ENSG00000160818.12655.86220444.972100.559604.243403.25950HepG2RPS2
GPATCH4ENSG00000160818.12748.44210454.207400.720406.904805.21950HepG2RPS5
GPATCH4ENSG00000160818.12494.53860339.811300.541203.448902.39500HepG2SERBP1
GPATCH4ENSG00000160818.121040.031401395.09000-0.423703.643802.84320HepG2SF3B1
GPATCH4ENSG00000160818.12567.43450439.995800.366902.685802.10180HepG2SF3B4
GPATCH4ENSG00000160818.12485.23900633.03480-0.383603.283802.53050HepG2SLBP
GPATCH4ENSG00000160818.12617.88800400.458400.625608.098707.08990HepG2SMN1
GPATCH4ENSG00000160818.12685.01710988.63900-0.529307.451606.73890HepG2SRFBP1
GPATCH4ENSG00000160818.12785.86210459.270100.7748011.5632010.73910HepG2SRSF1
GPATCH4ENSG00000160818.12831.20660651.834500.350603.529002.83770HepG2SRSF5
GPATCH4ENSG00000160818.12757.593501065.47820-0.492006.518305.52240HepG2SRSF7
GPATCH4ENSG00000160818.12493.79990373.649000.402103.231102.64400HepG2SRSF9
GPATCH4ENSG00000160818.12937.93800741.289800.339403.819103.10980HepG2SUCLG1
GPATCH4ENSG00000160818.12399.58820588.50340-0.558503.036002.33180HepG2SUPV3L1
GPATCH4ENSG00000160818.12586.87010412.836700.507404.609403.91440HepG2TAF15
GPATCH4ENSG00000160818.12808.220001373.63300-0.7652010.170808.90820HepG2TARDBP
GPATCH4ENSG00000160818.12481.35520379.312200.343602.036101.31640HepG2TIA1
GPATCH4ENSG00000160818.121356.18130630.075301.1059033.0114031.29200HepG2UTP3
GPATCH4ENSG00000160818.12431.67110638.92850-0.565706.714105.74260HepG2ZC3H8
GPATCH4ENSG00000160818.12225.56470455.34140-1.013405.613204.84950K562AGGF1
GPATCH4ENSG00000160818.12306.82580500.26470-0.705303.041801.99790K562AKAP8
GPATCH4ENSG00000160818.12350.18170473.78200-0.436101.948201.39730K562AKAP8L
GPATCH4ENSG00000160818.123051.876701837.321400.732004.808403.10410K562APOBEC3C
GPATCH4ENSG00000160818.121377.673902270.57750-0.720809.275607.62640K562BOP1
GPATCH4ENSG00000160818.121681.978602305.44700-0.454902.291401.34300K562CNOT7
GPATCH4ENSG00000160818.121170.716602414.30390-1.0442026.8667024.39590K562CPSF6
GPATCH4ENSG00000160818.124519.434601865.452301.2765071.2908068.47920K562DDX47
GPATCH4ENSG00000160818.121324.432401892.96390-0.515308.987107.80350K562EIF2S2
GPATCH4ENSG00000160818.121429.07230512.815901.478504.760503.40310K562EIF3A
GPATCH4ENSG00000160818.122083.47650647.087401.6869015.6539013.69960K562EIF3G
GPATCH4ENSG00000160818.12737.36130338.157701.1246015.9564013.85650K562EIF4A3
GPATCH4ENSG00000160818.121346.939802497.33000-0.890703.069702.17390K562FIP1L1
GPATCH4ENSG00000160818.121274.863402456.44170-0.9462017.8461015.59410K562FMR1
GPATCH4ENSG00000160818.121320.399802082.03190-0.657003.638502.57690K562FTO
GPATCH4ENSG00000160818.121571.59250351.664102.1599093.8029090.71100K562FXR1
GPATCH4ENSG00000160818.121314.729502305.08890-0.8101014.4119012.56460K562GPKOW
GPATCH4ENSG00000160818.12287.15100890.68740-1.633104.950203.16990K562HNRNPA2B1
GPATCH4ENSG00000160818.122018.439403386.27630-0.746502.499401.73970K562HSPD1
GPATCH4ENSG00000160818.12355.01270500.02300-0.494102.600901.61700K562IGF2BP2
GPATCH4ENSG00000160818.12322.06950502.87590-0.642802.558601.76890K562KIF1C
GPATCH4ENSG00000160818.121359.727301968.19860-0.533602.825201.88000K562KRR1
GPATCH4ENSG00000160818.121093.45560525.348401.057408.934907.37670K562MAGOH
GPATCH4ENSG00000160818.12338.58430481.31530-0.507502.373401.40360K562MAK16
GPATCH4ENSG00000160818.12992.97080524.258900.9214014.8798012.65060K562MATR3
GPATCH4ENSG00000160818.121396.704402250.01440-0.6879011.192309.35410K562METAP2
GPATCH4ENSG00000160818.121043.705201520.17020-0.542505.181204.20520K562NSUN2
GPATCH4ENSG00000160818.12174.92060779.64670-2.156106.672504.93440K562PABPN1
GPATCH4ENSG00000160818.12707.49660467.401500.598005.223103.86620K562PCBP2
GPATCH4ENSG00000160818.121159.298201488.83980-0.360902.479601.69280K562PCBP3
GPATCH4ENSG00000160818.12806.123301156.11380-0.520203.705301.87180K562PKM
GPATCH4ENSG00000160818.12343.37470927.45120-1.433503.974102.10920K562PPP1R8
GPATCH4ENSG00000160818.121311.55710967.430600.439003.723502.85290K562PRPF8
GPATCH4ENSG00000160818.121534.64250510.420601.5880047.9566045.35370K562PTBP1
GPATCH4ENSG00000160818.123328.172402271.807800.550802.949402.10630K562PUF60
GPATCH4ENSG00000160818.12317.91200470.01430-0.564102.629302.09650K562PUS1
GPATCH4ENSG00000160818.12814.27300489.347100.734608.251106.69020K562RBM22
GPATCH4ENSG00000160818.121082.96610514.979501.0723016.3883013.82440K562NELFE
GPATCH4ENSG00000160818.121900.71890985.503800.9475013.0126011.21780K562RPS19
GPATCH4ENSG00000160818.123175.733302056.466600.626804.229302.24230K562RPS3A
GPATCH4ENSG00000160818.12780.53620373.234901.064302.444201.50960K562RPS3
GPATCH4ENSG00000160818.121713.416501017.506700.751709.789307.81670K562SAFB
GPATCH4ENSG00000160818.121779.058601052.005500.757903.433201.79980K562SDAD1
GPATCH4ENSG00000160818.12317.87950713.32210-1.166102.917201.66930K562SF1
GPATCH4ENSG00000160818.121158.864501499.79420-0.372102.459001.68730K562SF3A3
GPATCH4ENSG00000160818.12533.62250361.191600.563005.059103.88460K562SF3B4
GPATCH4ENSG00000160818.12337.95500818.71650-1.276503.507602.06710K562SNRNP200
GPATCH4ENSG00000160818.12704.64800500.399900.493704.131003.27450K562SRSF1
GPATCH4ENSG00000160818.12348.56120472.63330-0.439302.585001.57580K562SRSF5
GPATCH4ENSG00000160818.12906.057701343.75320-0.568602.734701.57650K562SRSF7
GPATCH4ENSG00000160818.12370.304301004.99320-1.440403.793601.50110K562SUGP2
GPATCH4ENSG00000160818.12279.56210979.64890-1.809105.359003.17430K562SUPT6H
GPATCH4ENSG00000160818.122540.292601145.440801.1490034.4985031.97060K562SYNCRIP
GPATCH4ENSG00000160818.121323.761001978.71660-0.579904.268402.69010K562TROVE2
GPATCH4ENSG00000160818.12485.22590347.697700.480703.590502.67460K562U2AF2
GPATCH4ENSG00000160818.12519.59050991.42920-0.9321011.011208.92970K562UCHL5
GPATCH4ENSG00000160818.121076.819501611.85670-0.581903.411502.61890K562UPF1
GPATCH4ENSG00000160818.12811.695201379.23440-0.764902.218601.43520K562WDR3
GPATCH4ENSG00000160818.122288.431101434.109100.674107.049105.75680K562WDR43
GPATCH4ENSG00000160818.121710.61050645.934001.405007.077504.29410K562XRCC6
GPATCH4ENSG00000160818.12426.59850963.86010-1.175903.198701.45110K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GPATCH4 is not available on ENCORE database.





10 RBPs can affect the splicing of GPATCH4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGPATCH4ENSG00000160818.12chr1-156568212156568286156567731156568111156568759156568896-0.167000.002420.04255excludedHepG2U2AF1
SEGPATCH4ENSG00000160818.12chr1-1565675911565677301565661781565662701565678261565679160.059000.000350.05702includedK562LARP4
SEGPATCH4ENSG00000160818.12chr1-156568212156568286156567731156568111156568759156568896-0.165000.000460.01196excludedK562U2AF1
SEGPATCH4ENSG00000160818.12chr1-156567826156567913156566085156566270156568018156568111-0.096000.001280.07638excludedK562HNRNPUL1
SEGPATCH4ENSG00000160818.12chr1-156568212156568286156568018156568111156568759156568896-0.135000.002460.04135excludedK562U2AF2
A3SSGPATCH4ENSG00000160818.12chr1-1565655111565657481565655111565656411565658721565659840.098000.000000.00001longerK562AQR
A3SSGPATCH4ENSG00000160818.12chr1-1565658721565660401565658721565659231565661781565662700.099000.000000.00003longerK562AQR
RIGPATCH4ENSG00000160818.12chr1-1565658721565662701565658721565659231565661781565662700.420000.000020.00072includedK562SF3B4
RIGPATCH4ENSG00000160818.12chr1-1565658721565662701565658721565659231565661781565662700.100000.000050.00474includedK562BUD13
RIGPATCH4ENSG00000160818.12chr1-1565658721565662701565658721565659231565661781565662700.113000.001390.05585includedK562SUPV3L1
RIGPATCH4ENSG00000160818.12chr1-1565658721565662701565658721565659231565661781565662700.487000.000550.01355includedK562U2AF1
RIGPATCH4ENSG00000160818.12chr1-1565658721565662701565658721565659231565661781565662700.422000.000490.00877includedK562U2AF2
RIGPATCH4ENSG00000160818.12chr1-1565658721565662701565658721565659231565661781565662700.169000.000180.00353includedHepG2NCBP2
RIGPATCH4ENSG00000160818.12chr1-1565658721565662701565658721565659231565661781565662700.169000.003820.02819includedHepG2SF3B4
RIGPATCH4ENSG00000160818.12chr1-1565658721565662701565658721565659231565661781565662700.117000.001080.01309includedK562EFTUD2
RIGPATCH4ENSG00000160818.12chr1-1565658721565662701565658721565659231565661781565662700.150000.000000.00000includedK562AQR
MXEGPATCH4ENSG00000160818.12chr1-1565658721565659231565661781565662991565650041565656411565678261565679130.053000.004380.032141includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GPATCH4 is not avaliable on ENCORE database.